Array 1 259-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKBK01000332.1 Xanthomonas vasicola pv. vasculorum NCPPB 1326 scf_9767_1563_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 258 28 90.3 36 ---............................ CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 194 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 128 31 100.0 33 ............................... TGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCA 64 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 97.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CCAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCA # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 198-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373177.1 Xanthomonas vasicola pv. vasculorum NCPPB 1326 scf_9767_3931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 197 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 132 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 65 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 100.0 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GCGCCCTCACGGGCGCGTGGATTGAAACGGCCTCGGGCAGCGGTAGCCGGCTGATGCGGTCGATGTCGCGCCCTCACGGGCGCGTGGATTGAAACATCACCGATGCCCGCACGGTCACGCCAGACGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCCTCACGGGCGCGTGGATTGAAACTCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC # Right flank : CCTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 962-603 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373177.1 Xanthomonas vasicola pv. vasculorum NCPPB 1326 scf_9767_3931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 961 31 100.0 35 ............................... TTGAACGTCGGGATAGCCAGCTGGCGGCCAGAACG 895 31 100.0 35 ............................... AAGGGTCAAAAACGCTCCAACGCCTGCCATGTCAC 829 31 100.0 34 ............................... ACGCTCCTGGTCGTGACGGCGTGCGCCTACCTGG 764 31 100.0 33 ............................... CGGCTGCTGTTGTTGCTTCTCCGCACGCTCCTG 700 31 100.0 36 ............................... GGCCTCGGGCAGCGGTAGCCGGCTGATGCGGTCGAT 633 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCCACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : ATCACCGATGCCCGCACGGTCACGCCAGACGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCCTCACGGGCGCGTGGATTGAAACTCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACAAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGCGTCGCGCCCTCACGGGCGCGTGGATTGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33-195 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373100.1 Xanthomonas vasicola pv. vasculorum NCPPB 1326 scf_9767_388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 33 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 99 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 165 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 100.0 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ACGATACCCTTGGATCGCCAAGGTGATGATGCG # Right flank : CAGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCTGTCGCGCCCTCACGGGCGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTAAGAAGCAACTATTTAACCAATACATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACAGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGAGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCGGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTGTTTGATCTTGCAGATTTGGAAATGTGGGATAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAAT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 400-693 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373100.1 Xanthomonas vasicola pv. vasculorum NCPPB 1326 scf_9767_388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 400 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 465 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 531 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 597 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 663 31 96.8 0 ..............................A | ========== ====== ====== ====== =============================== =================================== ================== 5 31 99.4 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : ACGATACCCTTGGATCGCCAAGGTGATGATGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCGGTCGCGCCCTCACGGGCGCGTGGATTGAAACTATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACAGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCTGTCGCGCCCTCACGGGCGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTAAGAAGCAACTATTTAACCAATACATCG # Right flank : ATTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAAGTCGCGCCCTCACGGGCGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGTCGCTCAGCTGCAGCGACTGCCGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCATACAGACCCTGCCCCCTCAATGCGCACTATATGTCACGCCCTC # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 984-1147 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373100.1 Xanthomonas vasicola pv. vasculorum NCPPB 1326 scf_9767_388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 984 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 1049 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 1117 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 3 31 100.0 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GTGGATTGAAACTTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCGGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTGTTTGATCTTGCAGATTTGGAAATGTGGGATAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAATTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAAGTCGCGCCCTCACGGGCGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCACGTCGCTCAGCTGCAGCGACTGCC # Right flank : CCATACAGACCCTGCCCCCTCAATGCGCACTATATGTCACGCCCTCACGGGCGCGTGGATTGAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGTACCCGAACAAGAAGGGCCGGCAAGAGTCGCGCCCTGCCGGGCGCGTGGATTGAAACAACGGCCCGTTGATGATTCGGCACGTGGCGCAGGGTCGCGCCCTCACAGACGCGTAGATTGAAACACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //