Array 1 4470-3697 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOS01000047.1 Oceanobacillus indicireducens strain JCM 17251 sequence47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 4469 33 100.0 34 ................................. ACCTCTTGGGCGCGGGTTACGAATCGTTCCCCAC 4402 33 100.0 35 ................................. GAAAGGTGGCGGCAACGAATAAACATGGATACATT 4334 33 100.0 35 ................................. GAAAGGTGGCGGCAACGAATAAACATGGATACATT 4266 33 100.0 33 ................................. GTACAACCGCGAATATAATCAAGGTTTAAATAG 4200 33 100.0 34 ................................. CAGATGACGACTAAAAAAGCACCTGTGGTTTCAC 4133 33 100.0 34 ................................. TTTTGAAACGAATAACGGGGCAAGCGGATCGGGT 4066 33 100.0 35 ................................. GATCAGATCATCGATGTGTATGGGGGGAGAATGAA 3998 33 93.9 35 .........C................G...... GATCAGATCATCGAAGTGTATGGGGGTAGAAAGAA 3930 33 100.0 35 ................................. GGTTTTATCATGCGAAAAGCAAGCGAAAACGGGGA 3862 33 100.0 34 ................................. TTCCTTCCGGCGCTGGCCTTCTAATATTGTTTCG 3795 33 100.0 33 ................................. AGCTAGATGCTGTATCTTTCGAACACCGTCTTG 3729 33 97.0 0 .............C................... | ========== ====== ====== ====== ================================= =================================== ================== 12 33 99.2 34 GTCACTCCCTGTATGGGGAGTGTGGATTGAAAT # Left flank : CTGTTAATTAAAATGTAAAAGGTAAATGTATATGCCCTATAAAATTCGCTCTAACTGTAGAAATGTTATTATAGCATGGTAGATTTCCGAACTTTTGTCTTTATATTGATACAATTAAAAAGTTTGTATCAGGAAGTTTTTTCTTCAAAAGAAACGAAAGACTTACTTAAACATAGAGAAACCTCGCAGTAAGGAAGACTTTTCCAGTTTTTATCCATCTCATAACCTACATCATAACCTCAGTTTTTATGTCAGTCTTCACATCCAATAATAGGTTCTACAAATTAAAACAATGTTCAGGTAGTAATGGGCTTTGAAATTATTGAAAAACGTTAATTAAAACGTGCGAACCTGAAGCGCCCATGATTTCCCCGGAAGATTCGCACATAAAACTTTCTATTAACAATGGATATTTTCTGTTTTTAACTTGTTTTATAGATAGTGAAGATGATACGATACAACATATAGTAAGTTAGAGATGTTTTTGTCAATATCTCGCA # Right flank : GAAACCTCCGCTGTTTCAAATGTCCTGCCGATGCGAAGTCACTCCTTGTGAAAAGGAATTGGTAGCATGAATATATATAGTTCCTTCCGAATCCGAAAGCAACAGGATAATTAGAACCGGAAGAACAATATATCGCTGAAGAAGAGGCAATTGAGACTGCAGAAAAATTAGCTAGAGAAAAATAGGCTGAGCACTGTCCAAATTTTAAACACGGAACATGACTTAGTAGATGAAATAACCTCCCAATAACTAACTAGTGGCACTTAACAGTAAAATTTAAGTGCACTTTTTTCAGTCATTTCTCGCGTTGAAGTTATACAAGCCATCGCTTTCTATTTATCCGTTTTATCGGGGTGCAATCGTCCGTAAAACTCCCACCCCAAAATGGAGAGATTAATCAAATCTATTTAGGCGGGAGATAACGGACGCTAACCCCCCCGATTTACAAAAGCTCATTCAGTGGGAAAAGAGCCGCGACTAAAAAAACGCGATTCGTTTTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14645-13650 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOS01000047.1 Oceanobacillus indicireducens strain JCM 17251 sequence47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================================================== ================== 14644 33 100.0 35 ................................. ACCTCTTCCCGGACCTGATTATAAACAGATTGGCT 14576 33 97.0 34 ..........A...................... CTGACAGTCTCCTTACCAAGAATGCCATCTTGTT 14509 33 100.0 34 ................................. AAGGTGTTTCCGATACAGCTACTGTTAATGTAAC 14442 33 100.0 35 ................................. GGGAATATATGGATGGGACGAAAGACCAACAACTA 14374 33 100.0 34 ................................. CCCATAATGTTTCACCACTTTTTACAGTGTGATA 14307 33 100.0 35 ................................. AGGGAGTGCCGCAACTTCTGATTGACGGACAACAG 14239 33 100.0 33 ................................. ATCATACCGCTAGCCATTTTGTTAATCTCGTCA 14173 33 87.9 34 .............CT..A.......G....... CATAAATGTCAAGGATTGACGCAAAGTAGCTCCG 14106 33 90.9 34 .............CT..........G....... ATCTGTCGCATTGATGACTTCATGTCTCTTAACC 14039 33 90.9 34 .............CT..........G....... ATAACGGTAAACCGTTGGCTCAAGTGGGGAATAA 13972 33 90.9 33 ...........G..T.A................ TTTTTAAGAAATGCCATTGATTTATCTGTTAAC 13906 33 93.9 69 ...........G..T.................. TGCGATTTGCATGACTAGATAGTGTGGATTGAAATACAACACGGTGGAACATCCCGCTGCGGTATTCGA 13804 33 93.9 34 ...........G..T.................. ACTAGATCCAATTGCTTTAAACTCAATCTCTTGT 13737 33 87.9 23 ...........GG.T..........G....... CTTTGACCTAACGCGCGAATGGC Deletion [13682] 13681 32 78.8 0 ..-...........TA..G...GAT........ | ========== ====== ====== ====== ================================= ===================================================================== ================== 15 33 94.1 36 GTCACTCCCTGTATGGGGAGTGTGGATTGAAAT # Left flank : ACGCCAGTGCCACTGGCTATTCATACGACATTATGCGTGGCTGCGAACAGTATACCTAAAACAAACAATTTGGAAGTTGGTGCCACTCGGTCACTCCCTGTATGGGG # Right flank : ATTTCATTCATAGCATAACGGCTGCTGGTTCTGCACCACCCCTGTATCAAGGACCCTAACCAAAACTAAAAATAATTTTGATTTTCATTTTGAACGCCCATAGTACCAAGAGTTTGTTCAATAACATAACCCGCTCCCCATTAACTGACGGGCGCTGAACACAATTTTGTGAGTAATTCCATCTATGGATCATAATAATCAGACAAATCAGAGTGAAGATTACCCCTACTATCAATCACTCAAGCTGAATTTAGAAAATGGTGGGAAGGCAACCAATACCTTTCATCATATATACTAGCAGACGCTCCTTGTATCAGACCACATGCAAAAAAACAAGACCATTAATTCATTAAAATTGCTGGTCTTGTCTTTTGGGAGGCTTATTCAAATGTCCCTAAGTAACAGGCTAACAAAGTCATATTCCAAAACTAGTCATCTTTTTCTGCTTTAAATGACCCTGCTCTTCCTTTAAATATCATTTCATTAAAGTCTAAGATTTC # Questionable array : NO Score: 8.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:-0.19, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51-220 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOS01000016.1 Oceanobacillus indicireducens strain JCM 17251 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 51 33 100.0 36 ................................. GTAAAACGTGGAGCCTGTTCCTTTATGCATTATCTT 120 33 100.0 35 ................................. TGTGGTGGCAGTACCTAAAAGAGGACAAATCACGA 188 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 100.0 36 ATACAGGGAGTGACTCCCCATACAGGGAGTGAC # Left flank : TTTTGGCTATAAAGTTCTTTATAAAGACAACAGTTTAGACCGCAAACAGTA # Right flank : CTGCGAGATATTGACAAAAACATCTCTAACTTACTATATGTTGTATCGTATCATCTTCACTATCTATAAAACAAGTTAAAAACAGAAAATATCCATTGTTAATAGAAAGTATTATGTGCGAATCTTCCAGAGAAATCATGGGCACTTCAGGTTCGCACGTTTAATTAACGTTTTCCAATAATTTCAAAGCCTATTACTACCTGAACATTGTTTTAACTTGTAGAACCTATTATTGGATGTGAAGACTGACATAAAAACTGAGGTTTTGATGTAGGTTATGAGATGGATAAAAACTGGAAAAGTCTTACTGCGAGGTTTCTCTATGTTTAAATAAGTCTTTCGTTTCTTTTGAAGAAAAAAATTCCTAATACTAACTTTTTAATTGTATCAATAATAACATAAAAGTTCGGAAATCTACCATGCTAGAATAACATTTCTACGGTTAAGGCGAACTTTATAGGGAATATACATTTACTTTTTACATTATAATTAAAAGTACT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATACAGGGAGTGACTCCCCATACAGGGAGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 35901-35467 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOS01000016.1 Oceanobacillus indicireducens strain JCM 17251 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 35900 33 100.0 34 ................................. CGACGATGGACCAAGACAAAGGTGCATACCTTGG 35833 33 100.0 33 ................................. TCATCATTTGTGTTTTCGGTAGTTTCTGTTTCC 35767 33 100.0 34 ................................. AGAAAATAGGAGGAATGCAGTTGGGGAAGGCAAG 35700 33 100.0 34 ................................. TATTTTGCTCTTTGTGCCATAAGCGTAAAAGGTA 35633 33 100.0 34 ................................. TCCTATCGGGTCTCCATCTAAAAACGCAAAATAA 35566 33 100.0 34 ................................. ATCTGCCAAAGAAGAAATGGAGTCAATGCAATCT 35499 33 90.9 0 ............................T..TC | ========== ====== ====== ====== ================================= ================================== ================== 7 33 98.7 34 GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Left flank : ATAAAACTCTCTTTTATTTTCTATCAAAATAAAAAACTCCTTACAATTAAAAATACAAATAGATGTCTTTCAGACTATCACACCAACCTTTTCAAGTAAAGTGGCTGCTTTTAGTTTTACACCTTATTCGTGCCTGGAAGGACTCAGAATTTGTCATATTTTTATTGGCTTGAAGCAGGAATAAGCCTTTACTAGATTGAATACACCTTTAGTAAAGACTAACGGATTAAGTTCTCTAATATTTAGTTACTATCCTCATTAATTTGAATGTGCTGCACTTAGACTATACATCTATTATAACTAAGATATGAAAATAATTTAATTGAAAACTATGAACAAAATACGCGAACATGAAGCGCCCATGAATTCCCCGGTAGATTCGCACATAAAATCCAATATATAAGACGGATACTTTCTGATTAATACCTTGTTTTATAGATAGTGAAAGTGATACGATACTACATATAGTAAGATAGAAATATTTTTATCAATATCTCGCT # Right flank : GTTAAGTCCTTCTTGTCTTTTAAATATTTCGCAACTTCTAAAGTAGTTGTACCAAGATCTATTATTAATGTTTCCCCATCATGAATTAATGAAGCTGCAAGTTTACCAATCATCTGCTTTTCATTAGGGCTTACTCTTTCCCTTGAACGATAGGAAGGTTCTGCAGCTGATTTACTGTGTGGTACAGCTCCACCATATACTCTTTTTAATTTACCTTCTCTTTCTAAATGTTCTAAATCCCTTCTTACTGTTTCAATCGAAACATTAAATATCGTGCACAAATTAGCGACTTTTACAACCTTATCACTTTCTAGCATATCCAGAATAATTTTGTGCCTCTCTTGAGCTAACATGCTATCCCCTCACTTCGAAGCTTTTCTATAAGTTTTTTGTATTTAAATTTTAGACTTAAAAATTATATTTCTATTTTACCAAAATAAAACAAAAGAAGTGAGACATTCAAGTTATCTTTTATGCCTCACTTCTAAATATAAATTTAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 49119-53122 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOS01000016.1 Oceanobacillus indicireducens strain JCM 17251 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 49119 33 97.0 36 ................................G CACCAGAACTGATCATATGTGTCATTTATCTTTTTA 49188 33 97.0 37 ..................C.............. TCCTAATACGGTGTACTCTCCGTTACTGAGTGTTTTA 49258 33 97.0 36 ................................G CACCAGAACTGATCATATGTGTCATTTATCTTTTTA 49327 33 100.0 37 ................................. TCCTAATACGGTGTACTCTCCGTTACTGAGTTTTTTA 49397 33 100.0 34 ................................. AAAGTGACTTTGAACAGACCCGTTACTATGCCTA 49464 33 100.0 34 ................................. AATCATTTTGTTCATAACTTGGACGACAACATCA 49531 33 100.0 33 ................................. CACGAATACCAGTGATAACTGATCAGCCTATGC 49597 33 97.0 33 .............G................... CACGAACACCAGTGATAACCGATCAGCCTATGC 49663 33 97.0 33 .....G........................... CTCTACGATCTAATACAGGTCTTTCAATAGAAC 49729 33 97.0 34 ..................G.............. AATCATTTTGTTCATAACTTGGACGACAACATCA 49796 33 100.0 33 ................................. CACGAATACCAGTGATAACCGATCAGCCTATGC 49862 33 100.0 33 ................................. CTCTACGATCTAATACAGGTCTTTCTATATAAC 49928 33 100.0 33 ................................. CACGAATACCAGTGATAACCGATCAGCCTATAC 49994 33 100.0 33 ................................. CACGAATACCAGTGATAACCGATCAGCCTATAC 50060 33 100.0 33 ................................. CACGAATACCAGTGATAACCGATCAGCCTATAC 50126 33 100.0 33 ................................. CTCTACGATCTAATACAGGTCTTTCAATATAAC 50192 33 100.0 33 ................................. GAATGTGTGCAACCTATCCGCCGCGTGACACGT 50258 33 100.0 33 ................................. CAACTGACCGTCTGAATACTGCATACTCACCCG 50324 33 100.0 34 ................................. CTGGGATCGTATATATTGCCGATGACTTCGTATG 50391 33 97.0 35 ......................C.......... TGACTTTTTGATTTGCTACCGAACCCACCGAACGA 50459 33 100.0 35 ................................. TACGGTGGATTTACCTGTTTCTTATGATGATATGC 50527 33 100.0 33 ................................. CTCTACGATCTAATACAGGTCTTTCAATATAGC 50593 33 97.0 35 ..........................G...... TGTAAGTTGGTAATCTTCTTCTGCCTTCTATCCAC 50661 33 97.0 35 ..........................G...... TGTAAGTTGGTAATCTTCTTCTGCCTTCTATCCAC 50729 33 97.0 35 ..........................G...... TGTAAGTTGGTAATCTTCTTCTGCCTTCTATCCAC 50797 33 100.0 35 ................................. TCCCTATCCGACTTTTTCCCTTACACCCACGAGGT 50865 33 100.0 34 ................................. CTGGGATCGTATTTATTGCCGATGACTCCGTACG 50932 33 97.0 35 ......................G.......... TGTAAGTTGGTTATCTTCTGCTGCCTTCTATCCAC 51000 33 97.0 35 .............G................... TCCCTATCCGACTTTGTCCCTTACACCCACGAGGT 51068 33 100.0 35 ................................. TGTAAGTTGGTTATCTTCTTCTGCCTTCTATCCAC 51136 33 100.0 34 ................................. GTAGTAATTTCTTAATGTTTGTAACCTCGGTCTT 51203 33 100.0 35 ................................. TTTACATCGTTTGCGTTATCAATAAAACCACACGC 51271 33 97.0 34 ................................C GTAGTAATTCCTTAATGTTTGTAACCTCGGTCTT 51338 33 97.0 35 ..................G.............. TGTAAGTTGGTCATCGTCTTCTGCCTGCTATCCAC 51406 33 97.0 34 ......................C.......... GTAGTAATGTCTTAATGTTTGTAACCTCGGTCTT 51473 33 100.0 35 ................................. TTTGCATCGTTTGCGTTATCAATAAAACCACACTC 51541 33 100.0 33 ................................. ATCCACTGGATTAGTAGATAAAATCATAAACAA 51607 33 100.0 34 ................................. ATGCATTAAACATATCGCGGGAAAGAAATAAACC 51674 33 93.9 35 ...........C.....T............... GTCATATCGCCGATTTGCATGATGGATGTACGCAA 51742 33 93.9 33 ..................G...G.......... ATCCACTGGATTAGTAGATAACATCATAAACAA 51808 33 97.0 35 ...........G..................... CTTGCATCGTTTGCGTTATCAATAAAACCACACTC 51876 33 100.0 34 ................................. ATGCATTAAACATATCGCTGGAAAGAAATAAACC 51943 33 100.0 35 ................................. CTAACCACGAGAAGAGTCAATAAAAAAATAAACAA 52011 33 100.0 35 ................................. CTAACCACGAGAAGAGTCAATAAAAAAATAAACAA 52079 33 100.0 35 ................................. CTAACCACGAGAAGAGTCAATAAAAAAATAAACAA 52147 33 100.0 35 ................................. CTAACCACGAGAAGAGTCAATAAAAAAATAAACAA 52215 33 100.0 34 ................................. CTGCATTACACATATCGCTGGAAAGAAATAAACC 52282 33 100.0 35 ................................. GTCATATCGACAAATTGCCTGATGGATGTACGCAA 52350 33 100.0 36 ................................. TAGCTAATGGAAATGCAACTCTATACGGGGCGCAGC 52419 33 100.0 34 ................................. TTTTAGGTACTGCCACCAAAGATAAGGTTTAATA 52486 33 100.0 34 ................................. CCAATATATCCTCACAGATCGGATGCCGTCTTTC 52553 33 100.0 35 ................................. CCAACGATGAACAGGGTCAGTTGCCCAACAAAATT 52621 33 100.0 35 ................................. ATAGCCATTTGCTTTACCATTAAAAGCATTAATGT 52689 33 100.0 34 ................................. AATAATACTTATGGATTCATAAAGTATTAAAGCG 52756 33 100.0 34 ................................. AGTAATTTAGGACGGGGGTTTATTTTTAACTGGT 52823 33 100.0 34 ................................. AATCAAATATCGTTGAGTTTCTAAAGCAATTTTT 52890 33 100.0 33 ................................. ACACCCTCCATTTTTCTTTTATTGTACCACATT 52956 33 100.0 34 ................................. ATTCAACCGTACCAATCATTCGATGAAGAAACAG 53023 33 100.0 34 ................................. TTTTTAGAAGGGAATCACTATCCCGAATTGCGGG 53090 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 60 33 99.0 34 GTCGCTCCCTGTATGGGGAGCGTGGATTGAAAT # Left flank : GTCGCTCCCTGTATGGGGAGCGTGGATTGAAATAGTTTATCCAACAATTTGACATCATAATCGATGAACGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATATAAGAATGGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTTTAGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATTCCTAATACGGTGTACTCTCCGTTACTGAGTGTTTTA # Right flank : TTTTTAATTTGATATAGATGAATCGTGGGTTGCGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCACCCATCTTAAACAAAGAAGATTACTTTGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATATCAGGTAGATAGTCCGGATCGAGTGCAAGGAACGTCGCTCCCTGTATGGGGAGCGGGGATTGAAATGTTTCCCGTAATACATGGAAGTTCGCTTTTGTCGTCGCTCCCTGTATGGGGAGCGGGGATTGAAATGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA // Array 4 53454-54350 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOS01000016.1 Oceanobacillus indicireducens strain JCM 17251 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 53454 33 100.0 34 ................................. ATCAGGTAGATAGTCCGGATCGAGTGCAAGGAAC 53521 33 97.0 33 ......................G.......... GTTTCCCGTAATACATGGAAGTTCGCTTTTGTC 53587 33 97.0 33 ......................G.......... GTTTCCCGTAATACATGGAAGTTCGCTTTTGTC 53653 33 97.0 33 ......................G.......... GTTTCCCGTAATACATGGAAGTTCGCTTTTTTC 53719 33 100.0 34 ................................. ATCAGGTAGATAGTCCGTTTCGAGTGCAAGGAAC 53786 33 100.0 34 ................................. CGATATCAACGTATCCGAAGAATTGGAAATCAAA 53853 33 93.9 32 ......................G..G....... TTGTGGTTGCTGTCATTAAAAAGTAGTTTTCC 53918 33 100.0 33 ................................. GTTTCCCGTAATACATGGAAGTTCGCTTTTTTC 53984 33 100.0 32 ................................. TTGTGGTTGCTGTCATTAAAAAGTAGTTTTCC 54049 33 100.0 33 ................................. GATTCTAGTTACGGGAGCTTAAGTCTATGAAAG 54115 33 100.0 35 ................................. AACTTAGCACTTGCTAAGACAGCTAATCAAAGGCA 54183 33 100.0 35 ................................. TGTGTTTAAGGTGGGGGATATAATCAGTTTGAATG 54251 33 100.0 34 ................................. ACCCTCATATGATTCAAGATACTTTCCAGCAATG 54318 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 14 33 98.9 34 GTCGCTCCCTGTATGGGGAGCGTGGATTGAAAT # Left flank : TTGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATATTCAACCGTACCAATCATTCGATGAAGAAACAGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATTTTTTAGAAGGGAATCACTATCCCGAATTGCGGGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATTTTTAATTTGATATAGATGAATCGTGGGTTGCGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCACCCATCTTAAACAAAGAAGATTACTTT # Right flank : TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATACCCTCATATGATTCAAGATACTTTCCAGCAATGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATAACATGTGTGACTGTTCCGTCACGTACCGCATAAATGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATTTGACGAAAGAGAAAAACCGGATGCCGTTGCTTGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATCTTTGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTATGGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTGTATGGGGAGCGGGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 5 54609-55315 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOS01000016.1 Oceanobacillus indicireducens strain JCM 17251 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 54609 33 100.0 34 ................................. ACCCTCATATGATTCAAGATACTTTCCAGCAATG 54676 33 100.0 36 ................................. AACATGTGTGACTGTTCCGTCACGTACCGCATAAAT 54745 33 100.0 33 ................................. TTGACGAAAGAGAAAAACCGGATGCCGTTGCTT 54811 33 100.0 35 ................................. CTTTGTGATTTGCCATCATTAACAGAGTGATTAAA 54879 33 100.0 34 ................................. ACGGGATCACTCCTCAAATTAACTCCAATTGCTG 54946 33 100.0 35 ................................. AAGTGCAGAAATTGAAGAATGAGCAGGAGAAAAAA 55014 33 100.0 34 ................................. TAAAACGAGAAGGAATACTCCCGCTAATTGAAAG 55081 33 100.0 34 ................................. ACGGGATCACTCCTCAAATTAACTCCAATTGCTG 55148 33 100.0 35 ................................. AAGTGCAGAAATTGAAGAATGAGCAGGAGAAAAAA 55216 33 100.0 34 ................................. TAATGCTTACGGAAGTAGCTTGGAGTGGTATGTG 55283 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 100.0 34 GTCGCTCCCTGTATGGGGAGCGTGGATTGAAAT # Left flank : TGAAAGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATAACTTAGCACTTGCTAAGACAGCTAATCAAAGGCAGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATTGTGTTTAAGGTGGGGGATATAATCAGTTTGAATGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATACCCTCATATGATTCAAGATACTTTCCAGCAATGGTCGCTCCCTGTATGGGGAGCGTGGATTGAAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG # Right flank : TAAATGTCTATAATTTAAATTCATTTACTAACCGGTGTAATTCTTCTGCTAACTTTGCAAGCTCATCCGAACTAGCGGTAACCTCTTCCATCGCAGAGCTTGTTTGCTGGGTTGATGCAGAAGTTTGCTCCACACCTGCTGCTGATTCTTCTGAGATAGCTGCAATTTCTTGGATGGATGTATTCATCGCTTGGTTATTTGCTGCGATGTCCATAAGGTTTTCGGATGCAACGTTAATTTTATTTCCCATATCTGCAACAGCTGCACGAATCTTCTCGAATGTTTCACCTGTTGTTTTTATTTGCTCCGTGCCTTGTACTACGTCTGTATATCCTTCTTTCAAGGAGGTGACGACCATACTAGATTCATTTTGAATGCTATTTACAATATCTGTAATGTTTGTTACAGAGTCAGAAGATTGTTCAGCAAGCTTTCTCACTTCATCGGCAACAACAGCGAATCCTTTTCCTTGTTCACCGGCTCGGGCAGCTTCGATGGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGTATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA //