Array 1 406-2024 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXJ01000037.1 Neisseria meningitidis strain NM1561, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 406 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 472 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 538 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 604 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 670 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 736 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 802 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 868 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 934 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 1000 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1066 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1132 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1198 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 1264 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1330 36 100.0 30 .................................... TTGCGTCTATAACCCAATACACGATGTTAA 1396 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1462 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 1528 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 1594 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 1660 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1726 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1792 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 1858 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 1923 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 1989 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //