Array 1 62530-61042 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQFR01000010.1 Neisseria meningitidis strain M39092 M39092_S18_cleaned_ctg_6567, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 62529 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 62463 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 62397 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 62331 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 62265 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 62199 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 62133 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 62067 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 62001 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 61935 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 61869 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 61803 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 61737 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 61671 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 61605 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 61539 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 61473 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 61407 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 61341 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 61275 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 61209 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 61143 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 61077 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //