Array 1 43937-47537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHT010000010.1 Akkermansia muciniphila strain CSUN-34 AmII assembly_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 43937 31 100.0 34 ............................... CACATAATCTTTGTCCAGTAGGTAATCGTATGCT 44002 31 100.0 33 ............................... CATTTCAGCCGGGGAAATGTCGATGATTGGAAG 44066 31 100.0 35 ............................... TTCGTTCATTGTATTATGTGGTTAGGTTTTATTTG 44132 31 100.0 34 ............................... CAGCCGTGCCTTTAGGGTCCATCATAGGCCCCTG 44197 31 100.0 34 ............................... GGTTCGCACGTAGGAACGGTGGTTGTGCAATCGG 44262 31 100.0 34 ............................... TTCAATATCATGCCTTCCCAGTCCGTAAAGTCCG 44327 31 100.0 35 ............................... GGCGAGTACCAAGACGGTACTCCCGCAGTGCGGGC 44393 31 100.0 33 ............................... TCCTTGTAATATCCCACAAAAAAGAAACAAGAA 44457 31 100.0 34 ............................... AACATTCTTAATCGCCGCTTGTGCTGATTGTTCA 44522 31 100.0 34 ............................... CTTTTCAGGTTGCGGGCAGGGGAATAACCCCCCG 44587 31 100.0 34 ............................... GAGGAGTACCGGGAAAAGGTAATGCAGGGGCCTA 44652 31 100.0 33 ............................... TCAAAGTCAATCTTTTCCAACCCGGGAGAGAAA 44716 31 100.0 34 ............................... CCATTCTTTTGCGTCATACGTCATGCTCAATTCA 44781 31 100.0 34 ............................... TTGACAACCGTTTCCCGTATGCTATTATTCAGCC 44846 31 100.0 34 ............................... AAGACGATTGTCTGTCTTATCGCCATTTTTGTGG 44911 31 100.0 34 ............................... CCAGTCCGTAAAGTCCGTCAAATCTTCGATGCAA 44976 31 100.0 34 ............................... AACCCCGGCGAAAAGGTAGGAGATGAATTTGAGC 45041 31 100.0 34 ............................... ATACCTATTTTGACCTTGACACTGTTCCGATTGT 45106 31 100.0 34 ............................... CTTTTCAGGTTGCGGGCAGGGGAATAACCCCCCG 45171 31 100.0 34 ............................... CCTTTCCTTCCGGGAACAAGGCCAATTTAGCATA 45236 31 100.0 34 ............................... CATTTAATGAAGTGAGTGACACTAAAACCCACGC 45301 31 100.0 34 ............................... CTTTTCAGGTTGCGGGCAGGGGAATAACCCCCCG 45366 31 100.0 33 ............................... AACCGCTTCCCCGCCTTTGGCCTTGCCTGCTCT 45430 31 100.0 36 ............................... TAATATTTCTATACCTATAACAACCACTTTGTGGAA 45497 31 100.0 34 ............................... CTCATGTTAGGTACGGAACAAATATTATTTACAA 45562 31 100.0 34 ............................... TGACTAAACATGATGAAGGGTTCAGGGTTTACCT 45627 31 100.0 34 ............................... TAATCATATCCCTACTACAATGGTAGGAATTAGA 45692 31 100.0 35 ............................... CTTACCAAGATTGAGCTAATCCTTCCAATCATCGA 45758 31 100.0 34 ............................... TGGGCCCATTGACAAATCTGACCCTCTCACATAT 45823 31 100.0 34 ............................... CACGTCGAGAAGAGCGGGGATCATGACGTCGACT 45888 31 100.0 34 ............................... TCCGAGCCGGAAGGCGTCTGGTACGCCCGGCCCG 45953 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 46018 31 100.0 33 ............................... CTTCCGGCAGCTGCACGACGACCGCGCCCGCTA 46082 31 100.0 33 ............................... GTTATGAACCTTATCATGGTTTTTACAAGGATA 46146 31 100.0 33 ............................... CTCACGCTTTTCCAGCGAGAGCAGTTCATCAAG 46210 31 100.0 34 ............................... CGCAAAGAGGACTTGCAATTCATCCCCTCCAAGA 46275 31 100.0 34 ............................... TTCAAGCCTGTTTCCACGGGCTCCGGTGTTGTTG 46340 31 100.0 34 ............................... TTCGTAGTCCTTAAACCAGCGGTAAAAGGCAAAG 46405 31 100.0 34 ............................... GTGCGCCTTGAATTTGGTTGTAAGGCATGCTGTG 46470 31 100.0 34 ............................... AACGCCACCTTGGAAAGCAACGCCAAAGGCGTGA 46535 31 100.0 34 ............................... CCCGGAAGAGATTCCCTTGCGCCAGGCCCAGGCC 46600 31 100.0 34 ............................... CTTATGCTAGGTACAATACCGCTAGTATTTACAA 46665 31 100.0 34 ............................... CAATAATTTTTCAAATCTGTAGCATATATCCTTC 46730 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 46795 31 100.0 34 ............................... GATGGACATGCCGATCTTTTCCTCGATTTCGGTT 46860 31 100.0 34 ............................... TTCCGGATGGCACGTCAACAACGGTGGGCGTGAT 46925 31 100.0 34 ............................... CGGAGGCCCACGGGCGCCGGGCGGCTGATTATCG 46990 31 100.0 34 ............................... TCTAACTCCTTTTCAAGGTTAGCACAAAGCAAGA 47055 31 100.0 33 ............................... AACCCTTCTTGCCTGCGGCTTGCAGGGCTTCCA 47119 31 100.0 34 ............................... CGTTGGACAGTGACGCATGGTTATTTTCCGGGAA 47184 31 100.0 34 ............................... TAAAGACGTAGTACATTTTTTCGCCCAGGGCCAG 47249 31 100.0 34 ............................... GCTTCGTGGAAGCCTGCTGAAATACGGAAAACAT 47314 31 100.0 34 ............................... TATATTTTTTCGTAAGAATCTCTAACTTGTTCAC 47379 31 100.0 33 ............................... CTGTGTCAGGGTCCGTGATGGTCCTGGTTTCGA 47443 31 100.0 33 ............................... TCCTCCAGAAATTCCACAAAGTCCTTCTGGCTC 47507 31 87.1 0 .........A................T.G.T | ========== ====== ====== ====== =============================== ==================================== ================== 56 31 99.8 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGGCCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACTGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCGGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : TGTCGCAGACTGAACGGCCTACTATCTCTGGAATGAGAAGGAGCAGTTGGCTATAACACTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTTGTGAAAAGAAACAGATCAGAAGCCTTCAATCATTTCCGGGGTTAACCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGACTTCAATGGAATGGTGAACCTTGGCAGAAGAGTATTGACCGCTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTACCTTCCGGTCGTGCAGAGGAGGCATCTCCTTCAAACATCTGAGGAAGCGCTTGTTTGAAAATGGATGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGCGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTACTGCCGTCTCCGTCATTGCTGACGCTTTTCGTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 56010-57250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHT010000010.1 Akkermansia muciniphila strain CSUN-34 AmII assembly_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 56010 33 100.0 34 ................................. CAAATCGTTTTGTTGTCTAGTGGTTGTAGGGGAG 56077 33 100.0 36 ................................. AACAAAAATCCACCTGTACCCGTAAGCGGTAGGATT 56146 33 100.0 34 ................................. CGTTTCTCTGGCTGGAAATAGCAGTGAGAACCTT 56213 33 100.0 34 ................................. CCTGTCCAGTCCTTCATAATGCCTCCTTTCTCGG 56280 33 100.0 34 ................................. ATGATCTGCTCCGGCGCCTTTTTGCGCGGCGCTT 56347 33 100.0 34 ................................. GTTTATCCTGCAAAATAGTAATGATTGCAAGGTC 56414 33 100.0 34 ................................. AATATATTCAAAAATAACTTTGCTTCCTCCAGGA 56481 33 100.0 35 ................................. TATCTCGCAAATATCATTATCTGATAAACACAACC 56549 33 100.0 34 ................................. CTGAATCCCATCTCAAAATTGGTAATGACATCGT 56616 33 100.0 34 ................................. GGATTTACGCTATCCAAGTAATGATGAAGCACTT 56683 33 100.0 34 ................................. ATTAAAGTATTCGACGATATGCCTCAAAGCTGGA 56750 33 100.0 34 ................................. ATACCATTCGGCGGGATAAAGCGTTAAGTGCGCT 56817 33 100.0 34 ................................. TTTGAACATTTCACACGGCCTTAATTCGCATCCA 56884 33 100.0 34 ................................. CCCACTATGGGCGTGGTAAGGGAAAACGCGGTCC 56951 33 100.0 33 ................................. CGTAGTTGTATTCCCACGCGTAGAATTGAGCGG 57017 33 100.0 34 ................................. TTCACCGTCTTGACGGCAAACACCCCAGCCAGTT 57084 33 100.0 34 ................................. GGTATCATGGTCACAGGTCAGGTGCAGGACAACG 57151 33 100.0 34 ................................. TCGTTGAGATTATCCAAAGCTATAGCAGACAAAT 57218 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24608-25678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHT010000011.1 Akkermansia muciniphila strain CSUN-34 AmII assembly_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 24608 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 24673 31 100.0 34 ............................... CGACAAATTCAGGGATGTCGGGATTCGCGGTCAG 24738 31 100.0 35 ............................... TATTCCGTTGAGGCACATGCCAAATGAGTTGATGA 24804 31 100.0 33 ............................... TGACCAACTCATGATTGCCGTGTTGTTCGTCCG 24868 31 100.0 34 ............................... CGCTCGAATTTCTCAAGAAAGATTTTCGCATGGA 24933 31 100.0 34 ............................... TTGCCAAAAGCCAGAATATCTGTTACGAAGGCTT 24998 31 100.0 34 ............................... TATTTCCCTGCCTGTCTACATGCTCTTGAAAAAA 25063 31 100.0 33 ............................... CATGACAGAGCCGGAACAAACCAGTTACACGGC 25127 31 100.0 34 ............................... TACAGTTCCTTATGAGTGAATGTGTTGCAAATGG 25192 31 100.0 34 ............................... CCCATATTATATCCCCTTTTATTATATCCCTATC 25257 31 100.0 34 ............................... CGGCCTTGACGCGCCAGGGCGGCCATTACATCAA 25322 31 100.0 34 ............................... AACGCAGGCGACGGGCATCAAGGGGCAATACGCC 25387 31 100.0 34 ............................... CAGCTCCTTGATTCTGGTCTCCTGTTGGGCGACC 25452 31 100.0 34 ............................... AGAGTTAAACCCCTTCAGGCCGCCGGAACCCTTG 25517 31 100.0 34 ............................... TCGTCAACTCCGCTCTTTGTAACGCGGCCAAGGA 25582 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 25647 31 87.1 0 .....................A..A....TA | G [25660] ========== ====== ====== ====== =============================== =================================== ================== 17 31 99.2 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCACGCCGCCCGGGAGGCCTGTTGTTTTTGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGACCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTTCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTATGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14044-14724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHT010000042.1 Akkermansia muciniphila strain CSUN-34 AmII assembly_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 14044 31 100.0 34 ............................... CCCCGAACGCCTTTCTTCTTTAACGGTATTTTTG 14109 31 100.0 34 ............................... TCAAGACCTGCAACATTATCGACGAAACATATAT 14174 31 100.0 35 ............................... GAGGTTATCAATGCAGGATTTTACATCTTGCGGAA 14240 31 100.0 34 ............................... CTGATAAATTGTGAAGTGCAGGCCCCCGGCGTTG 14305 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 14370 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 14436 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 14500 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 14564 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 14629 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 14694 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 11 31 99.1 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //