Array 1 21251-22997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CECW01000010.1 Streptococcus suis strain LS0A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21251 32 100.0 35 ................................ AAATCATCTTTAGTAGCAACGTCCGTAAAATCAAT 21318 32 100.0 33 ................................ CTCACGGCTGATGAAGCAGTTACCTTGGGGCTT 21383 32 100.0 32 ................................ AAAATATGGGGACTTATCGTTCCAAGCCTTAT 21447 32 100.0 34 ................................ CTTTGGCGACTAATTCGGCGACTCGGCGAGAATA 21513 32 100.0 34 ................................ CGGTTACTCAACTTGGTTTTACAAAAACCACAAT 21579 32 100.0 34 ................................ ATAGTTGTGGCTTGCATACCAGCGGCTGCGCTTG 21645 32 100.0 33 ................................ CCGTAATAGACGTCAATCGTTGAGCTGTACCCA 21710 32 100.0 33 ................................ AGTCTTAGCTGCTTTGATGACCTCAGGAGAGCG 21775 32 100.0 35 ................................ AGTAACCCGTTTTTGAACTGCGTCATAGTCAGAGC 21842 32 100.0 33 ................................ AGGTCAATTTTGACAGAAACGCTAGTCCCCATC 21907 32 100.0 33 ................................ TGAGAGCTGGCGTGCAAGAGCTTTACCTGCCTC 21972 32 100.0 34 ................................ TTTGGCTTTTTTGTAAAAATCTTTCTTAATTTCA 22038 32 100.0 34 ................................ AGAAATACGCATGAGAACTATACCTCAATGAACA 22104 32 100.0 33 ................................ TACAGAACCAAGGGATTTCCCTTGCTTTTTTGC 22169 32 100.0 35 ................................ TAAGTTTAGTCCCAGGTTTCTTGTCGTCAATGAAA 22236 32 100.0 34 ................................ TTCTTGTGACGGATTTTAAAACCTCTATTTTCTC 22302 32 100.0 34 ................................ ACCGACGAAAAAACAGGTAATCAAGTTGCAGGGG 22368 32 100.0 34 ................................ CGTCGTTGCAAGTCGTCCAAGTTAGTTGGCACTG 22434 32 100.0 36 ................................ TGGTTTAGTTGCTTCGTCCAATTGCTGAGTCAAGTC 22502 32 100.0 36 ................................ CAAATGACACAGTTGATAAAGTCAGCCTCACGGTCG 22570 32 90.6 34 .........C...C..........G....... TGATTTAGGTGGTGTATATAAAACTACTAAAGAT 22636 32 90.6 34 .........C...C..........G....... CCCGAACAAGTAAGACACGATTGACAACCTCCTC 22702 32 84.4 33 .......T..T..C.A........G....... CAAAAAAATGGATGACAAGCTGGTACTCAACAA 22767 32 84.4 34 .......T..T..C.A........G....... GGGCAGATGTTATGTCACAAGCGCAGACTATACT 22833 32 84.4 34 .......T..T..C.A........G....... TCCTGTTAAAATAGTTTTGTTTGTAGAGGATAAA 22899 32 84.4 35 .......T..T..C.A........G....... CCTGCTGTCAAGATGTTGGACCACCTCCTCACCGT 22966 32 78.1 0 .......T..T..C.A..A.....G.....G. | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 96.2 34 GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Left flank : GCAAAGGCTATTCGAGGCGAGTTGGACAATTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAACAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGATTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTCTCTCTGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAACATATGAAAAGTAGTGAAAATAGAGTGAATTTGTGGTATATTCTATATCTGTAGAAACTTTATTTTTACAAAACAGTGTCAAATGGCACT # Right flank : TAACGTATCGACAGACTAGCTGCTCGGACGGACCGGTCGTACTCTTTGCGTATACGTAGGTTGAAGTTGTTTTTTGCTTAACACAGTATATCTGGCATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGTACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACCTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //