Array 1 227356-223846 **** Predicted by CRISPRDetect 2.4 *** >NZ_FSRQ01000001.1 Chryseobacterium scophthalmum strain DSM 16779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 227355 47 93.6 30 T..T.A......................................... GATGCTATTAAGGACAACTTGAAAGGTCGT A [227347] 227277 47 100.0 30 ............................................... AGAAATGATATTGCCGACCATGTGAGATCT 227200 47 100.0 30 ............................................... ACCACTTGAAATCTTCAACATTGAAAACGG 227123 47 100.0 30 ............................................... CCTACATCTTCTTATTACATTTGCCACAGT 227046 47 100.0 30 ............................................... ACATCTTAATCTCAGTCATTTGCTTAGTCT 226969 47 97.9 30 .............................................C. TCACAAAACCAAATGCGAATATTGTATTAT 226892 47 100.0 30 ............................................... TTCTAAGTTTTTTAATTGATTTAAACCGTT 226815 47 100.0 30 ............................................... TTTGAAAAAGAGTTTCAAGAACATTTGTTA 226738 47 100.0 30 ............................................... GTTAAATGTTGTTTGCTCGTTTGGCGTTGG 226661 47 100.0 30 ............................................... TTGTTCAAAGCAATAGCAACTGCATCTCGT 226584 47 100.0 30 ............................................... AATCTGAAGTTCTGGAAGGTTCAATCGTAT 226507 47 100.0 30 ............................................... CACTGGTCATTGATAACGGAATACTTCTTT 226430 47 100.0 30 ............................................... GGACTTAATTACTTAACTGCAGAAATGATA 226353 47 100.0 30 ............................................... TTCTCTGAATCTCGATCCACCTCTCATTGA 226276 47 100.0 30 ............................................... TCACCTGTCATTGTCAGTTTTCGCCCTTGC 226199 47 100.0 30 ............................................... AACAATCTCTAACAGCCGCCCCACAAGGGT 226122 47 100.0 29 ............................................... AACAAGTTCAAGTCCCGTTTTTGTACTGT 226046 47 100.0 29 ............................................... AACAAGTTCAAGTCCCGTTTTTGTACTGT 225970 47 100.0 29 ............................................... AACAAGTTCAAGTCCCGTTTTTGTACTGT 225894 47 100.0 30 ............................................... CCTGAGCCATTGTAGCTAATTGAGTAGCTG 225817 47 100.0 30 ............................................... TGGAAGGTGATTTCTTGGTAAATTCAGAAC 225740 47 100.0 30 ............................................... CGAGCTACCATATTTACTGACAGATGGCAT 225663 47 100.0 30 ............................................... CGAGCTACCATATTTACTGACAGATGGCAT 225586 47 100.0 30 ............................................... TTATGGGAGGTGTATTGAGTTTATTAGCCG 225509 47 100.0 30 ............................................... GTTAATCAATTTATCCCTGATTGGCAATAC 225432 47 100.0 30 ............................................... CCAACCAATTGAATGTGTCATAAGTTTAAT 225355 47 100.0 30 ............................................... ATTGCTTCCGCTAACTGAGTGTATTCTTCA 225278 47 100.0 30 ............................................... AAATAAATATGTTATTCTATGGGATTCAGG 225201 47 100.0 30 ............................................... ATCATAAAAGGCTAAACGATTTTTATCATC 225124 47 100.0 30 ............................................... CCAAAGGACATGTGGCTCATCTGTGACTGC 225047 47 100.0 30 ............................................... CGAAAGATTATCCGGTAGACATCATGACGG 224970 47 100.0 30 ............................................... CAGTTACTGTAATTCCCAAAACTTCCGATA 224893 47 100.0 30 ............................................... GCTTCGAAGGTTCGACTCCTTTATCATCCA 224816 47 100.0 30 ............................................... TCTACCCATCACAACTACTTGTCCTGATGT 224739 47 100.0 30 ............................................... ATAATTCTGGTTGTTTAGGTTGAAGATTAT 224662 47 100.0 30 ............................................... AAAATCGATCTTCCTAAAGAAAAGGTCAAA 224585 47 100.0 30 ............................................... AAAGGGCGAGTAGGTGTTTCCGACGTATGG 224508 47 100.0 30 ............................................... TATTCAAATTTATAAGAGAGCTTCCACTAT 224431 47 100.0 30 ............................................... TTCTGCTTTCAACTTTCCAATAAGATCAAG 224354 47 100.0 30 ............................................... AATGTATAAATAAATATCACTCGACCCCCT 224277 47 100.0 30 ............................................... AATATAAATACAATGGCTTGTAAATTAACA 224200 47 100.0 30 ............................................... TAAGGAAGAAGTACAAAAGTTCGCCGCTGC 224123 47 100.0 30 ............................................... ACTTACGCTGGTGCTACTACCTGCCGACCG 224046 47 100.0 30 ............................................... TCCAGGCGCAAGCCCTTGCAGGGCCTTAGC 223969 47 100.0 30 ............................................... ATACGATGGGTACCCAGCACCACCATTAGT 223892 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 46 47 99.8 30 GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC # Left flank : ATGCTAACTGATGCAAGTACTCTTACCGGCTTATCGGCAGATAATATCGCTATGGTAAAAATTATCAAAGACGGTGCAATTGGTATGAGTGGCGGTGGTAGTGGTGGTGTACTGATTTATACCAAAAGAGGAGATATGAAACCTGTAGCCAAAGCAAATACACTTTCAGAAATGGTTAACCTCAACTTTTTTGTGATGGAAGGTTATAATGAATCTGAAGGATATCCCGATTCTGATTATGAAAATTCTGAATTATCTAAAATAACTAGCGATTACAGACCCGTACTCTACTGGAATCCTAATATGGAGATAGATCCGGATACTCCCGCAAAAGTTGATTTTTACAATAATGATACTGCAAAAAAATTCCGTTTTATGATTATGGGATTTGATGCTGAAAAATACACTCCTGTTTACTATGAAAAGTTGTTGCCTTAATAATTTTTAAGTATATAAAATTTAAACTTGCAGTTCCTGAAATTATTTTGGGAACTTTTTTA # Right flank : CTCAAAAGCTAAACCTACTGTTTATCAGTAGGTTTTATTTGTTTTTAGAATTTCAAATTTTGCGTTTTTAGATGGAGTTTAAAATTAATTTCTGTCATTTTTTGATTCGTAAGAATACCAATATTAAAACTAAAGTAATTCTAGCGGCAACCACAAAACTTACATTATTACCAAGCTTAATATTTCAACTATAAAAGTCATAAGATAAACTAAAGCCAAAAGAAAAATTGGACATAATTAAAAATAACAACTAGTGCACTTAAAAAATATCAAGCCCTAAAACAATTCTAATTGTTGAAAGGTTGGTGGAGGTTCTTCTTTATTCCGAGCAAAGAAAATTTCTATATCTCCAAATTGTTTGTCGGTGATGCACATAATGGCTACTTTTCCTGCTTTTGGGAGCATAAACTTTACTCTTTTAATATGAACCTCTGCGTTTTCTCGGCTTGGGCAATGACGGACATACATTGAAAACTGAAATAGTGTGAAACCATCATCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATAACACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //