Array 1 487249-486321 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWJ01000001.1 Photorhabdus luminescens strain ATCC 29999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 487248 28 100.0 32 ............................ ACTGGCTTCATTACTCCATATTATTAAAACTC 487188 28 100.0 32 ............................ AGCCGATTGTGAATATATGAAATTAAAACAGG 487128 28 100.0 32 ............................ GGTCTTGCTGCTATAGCTGATGCAGCGGGTAT 487068 28 100.0 32 ............................ AATACGAGATCCATTAAGATGCCTTAATGCTG 487008 28 100.0 32 ............................ ATAAGAAATACAGTCACTCCAATACTCTAAAT 486948 28 100.0 32 ............................ TATGGCAAACCCCGCTTGAGATATTTACAGCG 486888 28 100.0 32 ............................ TGATGTCCCTGGGGGTAAAGCTTGCAAAATTA 486828 28 100.0 32 ............................ GTGTATTAGCTGCGGGCGATTTCATAAGGGGC 486768 28 100.0 32 ............................ GCCAGCTTACAGCTGACCCCCTGACGACTCGT 486708 28 100.0 32 ............................ GCGCCGAATATTCGTAAACGCCCGGACATGAC 486648 28 100.0 32 ............................ CGGCTGCGACGAAGACAAATTAGAGGCGTCTA 486588 28 100.0 32 ............................ TGCGTGATGCAACATAAATTGGTGCAAAATAT 486528 28 100.0 32 ............................ TAACACGAGGTGGAAACATGGCATTTAACATT 486468 28 100.0 32 ............................ ACATAGAAAGTTGGACTTCCGAATATGAGGAA 486408 28 100.0 32 ............................ ATTTTAAAAGATGGGACAACAAAACTGACATA 486348 28 92.9 0 ...T.......................G | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCCGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGGTTATGGCTAATTATATGCCGGATAACCATCGTAGTGGGAAATTGTTGGAACGATTGGGTTTTGAACGCGAAGGTTATGCTAAGAAATACTTGATGATTAATGGAGTCTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATGAAGTAAAGCAAGTTAGTAATGATGAATTAAATCACCGTTAAAAATCTGCTTTCTCCACACCTTATTTTTGACCCTTTTTTAAGGACTGATTTTAATTTATTGATTTTTAATAAAATATTATTTCTCTTGAAAAAAAGGGTTTTTTCATTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TTAGAAAGGATGAATGTATCTGGAATATAAATCAGATCTTTTCTCAAGAGTTCTATCCTGAATAAACTTCAATAAGTTGACTTATTCGGCGCATTGACTTCGGTTGGTGCGCTTTTTAAAGTGGCTATTCGAGCTTTTTGTAGTAAGGCTAGTTGCAAGGTGCTACTAGAGAGAATTCTGAATCTGTAACGTTATCAGTTAAGACAAGCGCCAAATTTTGCTTTTTCTTATGGTAAATAACAGTTAAGAGCTTATTATTTTTGGAATTATAATGAGTGGTAGATTCACATAATAAGTGCAATATCGTTACTTCGTAAGTAAATATATCCGTATTCCTTTAAATAATTCATTGGACGTTTTATTATTATTTCCTAATTGTCATGAAAATAATTTGAATAGTTTCCTTAATCTATAAAAATAGGTATTATTCTGATTTGGTCATTTAATAAATGCCAACTTCGATTTTATATTTTCTGGATAATAGCAATTGAATTGAAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 78011-78458 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWJ01000013.1 Photorhabdus luminescens strain ATCC 29999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 78011 28 100.0 32 ............................ AAAAAGATCTGGCGGGTTTGTTTCACCGCAGC 78071 28 100.0 32 ............................ TGTTCAAAAATGAACCCTTGTCACACAGGAAT 78131 28 100.0 32 ............................ ATCATTGACGCGCACCCTTTTTTTAAGCCACC 78191 28 100.0 32 ............................ TAATCGAGCACCTCCGGTCTTCTCGTTAAGTT 78251 28 96.4 32 ...........T................ ACAGCGACACAGCGGCAATTGATACACCCATT 78311 28 96.4 32 ...........T................ ATCGTGCGTCGAATAACAGATGTCCTGCAATA 78371 28 100.0 32 ............................ GGACGATAAAGGTGGTAATGGAAAAGAACCCC 78431 28 89.3 0 ..TC.......T................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTATTGATAGTGGCCGCGGAGTTTTAACTCATCAAGGGGATGCTATTAGAAATATTGAGGGGGCATTTCCTGGAGCGATAACAAATGGCTTTCATCTGGCAACAAAAGGGGCTTGTTATGCTAGCGCAACTTTTGGGGTGGCTACAGATGGTAAGCCTAAATCGGTAGGTCATTTTACCCCTGATGTTGTATACACTGAATATGGTTTTGGGTTTGACGCCTCAAGGGTTGTTCCTGTAGCCCCGGAGAACCGCCCTCGCAACATAGCCTTTAATTACATAGTGAGAGCAGCATAATGACTGAACAAAATACCCTTTAAATCAGAAATAGAAGGAGAGGTTGTTCTACTTGGATGGAGGGAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTATTTGTCTCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTACTCTTCAACATTCAGTAGGTTGGGGTTAATATGTAACT # Right flank : AGATAATGCTACGTTGTTTTCCTCAGACTTGCGGATATGTTCTTCTAGACAGTAGTGAGTCATATTAAGATGATTAGGGCATACAAGTATTGGTTTATTAAAACAAGTAATACTTGTTTTTAGGGTGGGTTTATTTTTATTGATTGTTGGAAATGTGATTGCTTAGACATTCTTAGATGATAGTGAAGGATACTAGGGCAGAAAAGCCACCGAGTGGTGGCTGGTATAATTATTGTGCTTTCTTTCTAAAGTTATCGTCGTTTTTAACGAACTCAAAAGCATCAAGGATAATACCTGTTATCCTCAATATATCTTCTGGCGCTTCTATAAATATTCTTGAGTTATTAGCAGATAATCCAGCCCTATTAACTTCGTTAGCTAATATATCAGTTAGCTCAATAGGTATCTGGATGTAAGGTTTATTCTTCTTGTCAAAGTATCTTATTATCCATCTATTTGATTTTCCTTGATAAAGAATTCCAAAGTAAGATTCTGTATCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 82989-83136 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWJ01000013.1 Photorhabdus luminescens strain ATCC 29999, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82989 28 100.0 32 ............................ TCAATGCGAGATTTGAGTACTATTGATTTAAT 83049 28 100.0 32 ............................ GATCAGTTAGTGGCACATAAGGGTTACTTTCC 83109 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAGAGGAGAGTTTATCCGGGGATGGGATGATGGAAGAGGGGTAGATTCATTTCGTTCATTATTGTCATGGCAGGAGGGATCTTATTTGTTACAGGATGTTAATCCAGTTAATAATGTTGTTAGTTTCTCATCTCATGATCGTGCGGCGCTAAAGTGGGATACTCCTCAAGATAAAGCCATTTCATTGTGGGCTAGGTATGTACATGCAAATACAAATAGATGGATTGCTGATACTACTTTTATAGGAGTCTCAAGGCCACGCAATATAGCATTTAACTACATAGTGAGAGCAGCATGATGACTGAACAAAATACCCTTTAAATCAGAAACAGAAGTAGAGGTTGTTCTACTTGGATGGAGGGAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTATTTGTCTCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTACTCTTCAATATTCAGTAGGTTGGGGTTAATATGTAACT # Right flank : AGTCAGCACTCTCATTTACCGACCGTTTTCAGAACTGGCGACTTAAGTTCTATTGCTGAGAACAGTGAATGTATGTTTTATGAAGATGGAGAGTTCTGTGGCATTCCAGAATACTGTCGTTTAGATGTTTATGCCTAAATTTCGTAAGATTCATCTTGGAACTTAAAACAAAAGGAGTTGCTGGAATAGATAGAATATATAAGAGCAAAATAGTTTTCAGATGTTAACTATAAATGGTTTGGATATATTTTCGATTCTAAGGTATTGAATTATTTATTGCTGAAAATTATATAAAAACAGTCAATCTTCTAATAAATAGGAATGATGTATTACTCTTATTTATGAACTAGACTCTAATTTGAATAAATTACAGTCGGATTATTTTTGTAATTATTAAATATGTTGATTATAAAAAATATTATTTTTCTTAAGGAGGAAGTACATGAGTCAAAAAAATGATTTTAAGGCTTTTTCTATTAGCAATAGTGCTAATGTAATTA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 108946-108437 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWJ01000004.1 Photorhabdus luminescens strain ATCC 29999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 108945 28 100.0 32 ............................ GTTGTTATCACACATAATGTAAATACCAACGG 108885 28 100.0 32 ............................ GAAGACAGTAGGATCGTAAGTTTCTGCCATGT 108825 28 100.0 33 ............................ AATCGCATTTGACGGTTCATGTTCCGGCATACA 108764 28 100.0 32 ............................ ATAGAGTGTACGAAGTTAGGGCTAATACCGTT 108704 28 100.0 32 ............................ ACACGGTTGGCCGTGGAATTGAACGGATTTAA 108644 28 100.0 32 ............................ AGTAGACTCACGAAATCGCTTACCTTGATACA 108584 28 100.0 32 ............................ TGGATGCCATTCTCCGTTCTGACATGAACATT 108524 28 92.9 32 ...........C.T.............. AGTTGAGCATGATGTTTGCGCGGTTTCCGGTT 108464 28 78.6 0 ...........C.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTATCCTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCGGCCCCTCAAGATACTCGATATCGTCGTGTGAGCCGAGTGCAGGTAAAAAGCAACGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAGCAAGCTTGGCAACGTATTCCAATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGTCAAAGCTTTCTGTTGTTTGTCGAACAAGGGCCAATACAAGACAGCCCAGCGTCAGGCGTTTTCAGTTCTTATGGATTAAGTTCATCAGCTACCATTCCTTGGTTTTGACCCTTTTTTTGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATCATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TCAATCGAGTGCGCTAAAATTAAAATAAAGAAGCCTATTTCCGTCCTGATGAGCATCAATTCTTATGCTTTTGAGCATACGTTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAACCACTTACGGGTTGGTCCGACCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCTACTGGGTGATAGCCTTTGGGGACCATTACTACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGATTCAAGCGATGGTAATAGGTTTCTTCCAGATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCATCGGTAAAGACTTCAACCACCAGCAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTTCCACGTTGTTCTGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 121910-121462 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMWJ01000004.1 Photorhabdus luminescens strain ATCC 29999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121909 28 100.0 32 ............................ AACAATGTTCCTTGATGAGCCTCAACTGTTAA 121849 28 100.0 32 ............................ TTGCCAGTCGAGCGGGTACATAACGCCCAATT 121789 28 100.0 32 ............................ TGTATCGGGCATGGGGCTTCACCCCTGTCCGG 121729 28 100.0 32 ............................ TTTACTACGCCCAGTGAGTTGTTAGCTTGGTA 121669 28 100.0 32 ............................ GGTTGATGAAACTGATGTTCTTGCAAATCTGA 121609 28 100.0 32 ............................ ACGTTAATATTAATTTCTGCCACATGACCAGC 121549 28 100.0 32 ............................ GCTTTAGCGGCTGTACTTATCACGAGGAAGGA 121489 28 92.9 0 .........................GC. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTTTGGTTGCAACTTGGTGTTATTAATGAGCAGGCAAAAGCGTTGGCAGAGGAAGCTGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTGATTATTTGGTTTCTAATCAATGGATGAGAGGCGGTGTCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGGATATTGAGTTTGTTTCTTTAGACATCTTATGAAATCTACTTTTACAGTTATTACAATATTTTAAGGCAATTTTAGTTGTTCTTATGGCTGCTGAATTTTGCCAGAATCTACACTTTCGTTGCTATAAGATATGGTGCTTTTGCTGCCCCCCTGTTTTGACCCTTTTTTATCATCAAAAAATAACCTATTGATTTAAAAGAAAAATAAAATATCTCCTAAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCTTAAAAATACGATAACTGCCTTAGATTGCTTAAGGGGTATAAGGGGAGTATTAATTGCGTAGTCTTGGGGCTAATAGCTGATTGCGGATGGACTCTGCTAGCTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGTGCTTCTGCTAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAAGGAGCGGAACGCAAAGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGGTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTGCTTTAATTGCGAGCGAGACTTCATCTGTTTCAGGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //