Array 1 45082-44806 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUI01000005.1 Phocaeicola plebeius strain AF25-1LB AF25-1LB.Scaf5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 45081 47 100.0 29 ............................................... GAGTCTACTTTATGGGATTTGTAAATTCT 45005 47 97.9 29 ................................G.............. ACAGATGTTATTTTATGACAGACGACGGA 44929 47 100.0 30 ............................................... CATGTGCGCAAAGTGTACATAGATAATCCT 44852 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 99.5 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GCCGACCGTGAAATCCGTACAGGGCCTTACGGTCTGGTAGGTTTCTGGATTGGCGGTGCGAACGAGCTGGTTCGTGAAATCCGTTTCTGGAAGACGGCCCGCACACCTCAGCAGTTGAAGCAGTTCATGTGGAAAACGGTAGACGGAAGTGACGAGAATCTGGTGCTGTATTATCCGTTGAACGGAAAGAAACGCAACCTTGACACAGGAGAAATCACCGAGGACGAAACCATGCTCTGGGATTTCAGCAACAATGCCAAACATCTGCCTCTTCCTTCAAAAGCTAAGTTTGATGATAATGACGGAAAAGGCTTTATGTTCCCTTTGGTTGATTAATTATAGGTTTTATTAATGAAGAAAGTCTGTCTCCAACACTCTGGTGTGGAGGCAGTTTTTTATGTGTTATTTTAGGGACAAATGATATTTAAATGTAGAAAAACTTTTAGTATCTTCGAACCATTGGAAACAATTTGCTGTTTTGATGCAAAATTGGGAAGAAA # Right flank : TTATTGGTTGTTTCTTGTTGTCTATCAGTTGGTTATAAGTAAATTTAGAAAAAGTAAAAGTTGTTTCTTGAAGTAATAAGTCCCATATTAACCATGGGATTTATTATTTTAAAAGAGTTCTAATTGTTGTCCTGGTGTTTTTATCCCACTTGCTTTCTTGCCATAAAATAGTTCAATTTCTCCAAATTGTTTGTCTGTGATACATATAATTCCAACTTGACCATATTCAGGTAGAAAGGATTTTACTCTTTTTATATGCACAGCTGCATTTTCACTACTTGCACAATGGCGTACATAGATAGAGAATTGAAACATTGTGAATCCATCTTTTTGTAGATTTTGTCGAAATCAGTATAAGCTTTTTTGTCTTTCTTTGTTTCTGTTGGTAGATCAAAAAGAACTAAAATCCACATAACTCTATATTCGCTGAAACGTTCCATTAAAATTCAGGATAAATGATTTTTCGTGATTCTCCAGAAAAGCATTTATATAGTGATGCC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 41207-41439 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUI01000033.1 Phocaeicola plebeius strain AF25-1LB AF25-1LB.Scaf33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41207 36 100.0 29 .................................... TATCGCTTACTTCAAGCTTCTTCTTATAC 41272 36 100.0 30 .................................... AGGTAGGATCTGACGGGATAGCCGTTTTCA 41338 36 100.0 30 .................................... TTGCAATACAAAGTTACAAAGAGCACATTG 41404 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 33 GTTGGTTTTATCATTGTTTTGAATGGTATATCCAAC # Left flank : TACGCAAAACCATGTTTACAGCCGTGAGGTTATAAAGCAGGCTTTAAAACATAATGCCGGAACTATCCACATGGAGTCATTGAAAGATTTCGGAAAAGGTAAGGAGGGTTATGTAAAAGACGAGTATAAGTATCTGCTTCGTTATTGGTCGTATTACGAACTGCAAAGTATGATAGAATATAAAGCGAAATTGGAAGGTATTGAAGTGAAATATATTGACCCTGCATATACCAGCCAGACATGCAGCTATTGCGGAGAACGTGGAGAACGTAAGAAGCAAGAAGAATTTGTTTGTACGAATCCCCAATGTAAACGACGAGGAGAGAAAATAAATGCAGACTTTAATGCTGCAAGAAATATTGCGATGAGTAAAAAAATCGTGAAAGATAATTAGAAAAGAAATTTTCTAATAGGGGCTGCTGGAAGTCCTTAACCTGAGATAGGAAACTATACTCGGGAAGTACGTCAAAACATTGAAATTAATAAACTTAGAACTAACG # Right flank : CTATAAAGTCGTCTGCGATGATGTGCGCATGGGTGTTAATAATCGTGTCTTTTTTTACTTATTTTAGTTATAAGGTAATATACTTATAAGGGTTATTATTGCTAACGCATGTGGTTGTTTATCACATACGTTAGCAATCAATCATTACATACGTTAGTAATAATCAACGACTAACGTATGTAATAATCTGCAAGAAAACTTTGTCATTTCAAATAAAATTGTAACTTTGCCATTACAGTCCCAACTAATAAAAAAGGAGGTCAGTATGTACAAGTACAAGCTCGTAAAGAAAATCAATCCGCAGGATAAGGCAGCACCTAAGAAATGGTATGCAATTCCTATCAGCGAAGTTCCACAGACTGTAAAAGCCATGACACGTGCAGCTACGGAAAACACAACAACCGCTCCCATAGAAATGGAAGCTGCTCTTGAATTACTTGGAAGACACGCACGTCAGCAATTGCAGCAGGGACACACAGTAAGAGTAGGTGATTTAGGTA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGTTTTATCATTGTTTTGAATGGTATATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 931-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUI01000080.1 Phocaeicola plebeius strain AF25-1LB AF25-1LB.Scaf80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 930 36 100.0 27 .................................... CAAAGCCTATCTGCGTGGCGATACGTA 867 36 100.0 28 .................................... ATCCATTATACACAAGCCTACATCAAAA 803 36 100.0 28 .................................... GAAGTGACTACCTTTAGTTACTGGTTAA 739 36 100.0 29 .................................... CTGGGCGAACGGCTGAAATGAGTCCTGGA 674 36 100.0 29 .................................... TTGAGCCTGTATTTGGTATGGATAGACTT 609 36 100.0 29 .................................... AACTGACAGCAATGGAATGGGTAGCATAT 544 36 100.0 29 .................................... GCTCTTAGCTGACTTGAAGGGCCATACTT 479 36 100.0 28 .................................... TACCCTGTCCGGTTACTGTTCCGGCGGT 415 36 100.0 27 .................................... ACATGGTTTGAAGGAAAAATCCGCTAC 352 36 100.0 28 .................................... ATATGCAGATTTCGCGGCAGGGGAAACC 288 36 100.0 29 .................................... TTTCAAAAATGAATGGCTAAACCGTACAG 223 36 100.0 28 .................................... AACTTGCTATCAAAGAAGGTTGGTACAC 159 36 100.0 28 .................................... AAGAGACAGAGAAGCAGGTAACGTTATC 95 36 100.0 25 .................................... GTTTTCTTTCCGTTCCAGAAAATAT 34 34 94.4 0 ..................................-- | ========== ====== ====== ====== ==================================== ============================= ================== 15 36 99.6 28 ATCTACACATAGTAGAAATTACTTAGTCATATAGAC # Left flank : CGTCATGATGCGAAATACCTGGCTTCAGGACAACACTCCCGTACACGTAGGACTCATGGCAGCCAGCCCCGACGGAAACGGCTTCAATGCCACCTTCGAGCATTTCAAGGTAAAACACCTTCCTGACCTTCGCCGACAGGAATGGTTGAAAAAGAATGCGGAATAAAAGAGTTTATGGGCTTAATTCCCCAGGCATTTCACTTAATATTCAGAAATGCCTGGGTATCCATTGGCAAACTTTCTTATATAATATGTCAAAACACATATTTTTTCTACCTTTGTAAAAACAAACCACTATGTTCGAAGACCAAATAAGAAAGTACCAATCATAACACAAGCACACAGAAAAGACATCATGAAATCCCAAAGAGCCAAAAACGCAGTCAGAAGACTCCTGATAAGTATCTTCTTTTTAGAATGTATAGGAATGACTTCGGTGTATAGCCAAGTACATGAGGCAATTAAACCTTATGTAGATTCCGGTTTTTATTGATAGCGTT # Right flank : G # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACACATAGTAGAAATTACTTAGTCATATAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //