Array 1 1490842-1489185 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPQF01000002.1 Vibrio parahaemolyticus strain WC15 contig.2.cir, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1490841 28 100.0 32 ............................ GTCATCAAAATTTATCGATAAATTAAAAGAGT 1490781 28 100.0 32 ............................ TTAGCCTTAGCTTTAGCCTCTTGCTTGGCCTT 1490721 28 100.0 33 ............................ GATGAGGAAATGGCTGAGTTAGCTCGAAACCTT 1490660 28 100.0 32 ............................ GTCACAAGGGTGATTTCCACTCCTTGCTGATC 1490600 28 100.0 33 ............................ ATCCGTCTAACGCTTCATCAAATGGGTGGTATT 1490539 28 100.0 32 ............................ TTTTTTATTGGATTGAAGTTATGACATACCCA 1490479 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 1490419 28 100.0 32 ............................ GTCAAAACGCGATTGTGATGCAAAACCTCGAC 1490359 28 100.0 33 ............................ TATGACAGCTCAATGAGTCTAGCTAAGAAGTTT 1490298 28 100.0 32 ............................ CGTCAAGGCTGGTACTCAAACAGAAGCGAAAG 1490238 28 100.0 33 ............................ ATACCGCAATATTCACATAAACGAAAGAAATCT 1490177 28 100.0 32 ............................ TGGCAGCCTGATAAGAATTGGGCTTCTGGTGT 1490117 28 100.0 33 ............................ CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 1490056 28 100.0 32 ............................ TCGGCGTTGACGCCTGCATTGCAGAAGTTGTT 1489996 28 100.0 32 ............................ AACTAGCGCGCTACGCTTACTCAAATCAAAAA 1489936 28 100.0 33 ............................ TGAGTTTCTGTTAATGAGCAAGAAACCTCCCTT 1489875 28 100.0 33 ............................ AATAGATCGTCGCCGCTGAATTGTGCTAGGTCT 1489814 28 100.0 32 ............................ AATAAACCCTGCCAGTGAGTCTGAGAGAGGCT 1489754 28 100.0 32 ............................ TTTGCCTTGTGGCAAGTGCATTGGTTGTAAAA 1489694 28 100.0 32 ............................ TTTGCGCTTCTTCTATGTACCAACTAGGTTTT 1489634 28 100.0 32 ............................ TTAGACAGATTGTAAACCTTGTAGAAGTCATC 1489574 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 1489514 28 100.0 32 ............................ TACGTAATATATATTGAAAAATGCGGTAAAGC 1489454 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 1489394 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 1489332 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 1489272 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 1489212 28 89.3 0 ..........A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAACCCATGATTATTCATATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGATATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //