Array 1 2963-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMU01000122.1 Actinoplanes regularis strain NBRC 12514 sequence122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2962 36 97.2 40 .G.................................. AGCGCTGCGTCGTTGCGCTGGTCAGCCTCGGCGGCTTCCC 2886 36 97.2 36 .G.................................. GTACGGCTCAAGAGCCAGGCGTCGCACCTGCTGTCC 2814 36 97.2 34 .G.................................. TGGGATGCCGTTGACGGTGGCGACCCATCCGGCG 2744 36 97.2 34 .G.................................. CTGGAGGAAGTTGACCCGCTTGGCGACCTGGCGG 2674 36 97.2 40 .G.................................. ACCGACGACCCGGCAGCCGGCACGCACTATCCGCTCCGGG 2598 36 97.2 36 .G.................................. ATCGGCCTTGTGGCGGAGGAGGTCGACGCGCTCGGC 2526 36 97.2 36 .G.................................. GACACCGCCCGCGGGCTGGTCGTCGAGGTGTACGCC 2454 36 97.2 36 .G.................................. GTCCTCGGCCGGTCCGCGTCCCGGGGCGTGTACGAG 2382 36 97.2 38 .G.................................. ATGGCGACCATGCGCCGGGTCACCGAGTCGCCGAGGAT 2308 36 97.2 34 .G.................................. TTCTCCCCACCCCGGTGGATCAGCGAGCCGATCG 2238 36 97.2 40 .G.................................. ACGATGTTGCAGCTGCATGCGGGTATGTCCGCGACGGCGC 2162 36 97.2 39 .G.................................. TGGGTGCGCGTGTTGAATAGATTCGCGCGATGATCACTG 2087 36 97.2 37 .G.................................. ACGTGCCGCTGCCCGCCGCTCCGCGTGGTGGTCCACC 2014 36 97.2 35 .G.................................. CTGAAGAAGCCGTCCGATGAGGCGGATGGGTTCGC 1943 36 97.2 36 .G.................................. GAGGCCGAACGCGCGCCGGATGACCCGTGGGCTTAC 1871 36 100.0 35 .................................... ATCTGGATCATCGCCGGTGAGGACCAAGCCTCCGC 1800 36 100.0 36 .................................... ACCGACCAGTGCTGTCCCGCGCGGGAGCATGAGCAG 1728 36 100.0 34 .................................... ACATCGTGCGGGTACACGTCGTCCTGGGCGAGCG 1658 36 100.0 37 .................................... GACTTCGACATCCGCAAGGAGGCGCTCGGCCTGGCCG 1585 36 100.0 35 .................................... GGGTTGCCGGCGCGGGCGAGGATGTCGGCGACCTG 1514 36 100.0 40 .................................... CAGGTGTCAAGGTTGGCCGGGCCACGCTCGAGATGGCCGT 1438 36 100.0 33 .................................... ACCGACGCGAACGGCGAGCCGCCCGGGCGGACC 1369 36 100.0 38 .................................... TGCCCGTCCCCGGGGTAGGCGCGGGAGTAGATGCCGTT 1295 36 100.0 40 .................................... CCCTGGGCCGACGACGACGGGGAGGCCCTGGCCGGCAAGC 1219 36 100.0 37 .................................... GACCTGGCGCTGATCCCCCGGATCGAACCGATCCCCG 1146 36 100.0 35 .................................... ATGCTCCAGTCGAACGGCCGCGGCAACGGAGCCAG 1075 36 100.0 39 .................................... CGGGTGAGCGGCGGCGTGTCGATTGCCGGGCAGACAGAT 1000 36 100.0 38 .................................... ATCCAGGGCCGAAACATCCGCTGGACGGTGCCCCAGGA 926 36 100.0 34 .................................... TTCGCCTGGTCGACGACCAGGGTCCGCTGCGTGT 856 36 100.0 39 .................................... GACTCCCACGCGAGGCGGCGCGCGGTCTCCTGGTCGTAG 781 36 100.0 35 .................................... CGCGACGGCTCCAAGGGCGTCGAGGAGTGGAAGAA 710 36 100.0 38 .................................... CGCGAGAATCACGCCGGAACGCCGATGGCGACAACCCG 636 36 100.0 37 .................................... ATTCCGCCCTCGTCGCCGCCGAACGATCCGTCCTCGG 563 36 100.0 34 .................................... GAGGGCTGGTGGCAGGTCCCGGACGGGCTACTCA 493 36 100.0 36 .................................... ATGCCGGCGATGCGGCGGGCGCGGTCGAGTGGGGTG 421 36 100.0 37 .................................... AGGCGGCAGTCGCGGACGTCGGCGTGCGGCGGGATCG 348 36 97.2 40 .............T...................... GCGATACACCGGCCGGCCGCGGTGTCGATCCGGGGCGCGG 272 36 100.0 40 .................................... TCGTCGGATCCGGACGAGATCGCCTACTACATCGGCGACC 196 36 100.0 39 .................................... ACGTTGACGAACACGTTCATCGCGAACGGCAACGACGTG 121 36 100.0 37 .................................... CGGGCGGGGAAGACACGAAGCAGGTGGGCCCACTGGG 48 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 41 36 98.9 37 GTCGCAGCTCCTCCGGGAGCTGCCCTTCATTGAGGC # Left flank : CGATGTAGCCGACGATGTACGTCGTACAAAAGTCGCCAAGAAGCTCGAATCATACGGCGACCGAGTCCAGTACAGCGTTTTCGTCGTGGATATCCGCCCGGCCAAGCTGGTGCGGCTGCGAGCCCAGCTGATCGCCCTCATCGACCAGTCCACCGACTCGGTGCTCTTCGGAAACCTCGGCGCACTTCGTGAAAGCCGGAGCCGATCCCTCGACGTCATCGGACGCAGCCGCCCGGTCACTGGTCACGGCCCGGCGATCCTGTGACCTAACAGGCAGCAGCGTGTGCGCTCATCCGCAATATCGTTCGAGTCGAGTCCACGTGCGAAGGCTCCGTTGTGCCGCCGTTGAGCGCTCACCCTTCGCGCACTTCTGAGCAGGTGTTACGGGCCTCCCGACAGGCGGGTCGAGGGCGCTGCGGCGGGGTGGGGCAGCTGCCGCACAACACCCTTCGCAACAGCGGTGCCGAATCCCAGCTCAGCGTGGGTAATATCGGGCCCCA # Right flank : CGCGGTTCGGTTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCTCCTCCGGGAGCTGCCCTTCATTGAGGC # Alternate repeat : GGCGCAGCTCCTCCGGGAGCTGCCCTTCATTGAGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 17846-18685 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMU01000113.1 Actinoplanes regularis strain NBRC 12514 sequence113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 17846 36 100.0 38 .................................... TCGTGCACATGGCGGCGCGGACCGGACGCCTGTTCGGC 17920 36 100.0 36 .................................... CGCACAAGGCCCCGAACTACTGCATCCAGGGCACCG 17992 36 100.0 33 .................................... TACCGCGACGGCGACACCTGGCGCGGCACCCTC 18061 36 100.0 40 .................................... GGACGCCGCGATGGCCCAGATGGTCCAAAGCGGCCAGGGC 18137 36 100.0 38 .................................... TACGGCCAGAAGCGCGTCGTGGCGTTGTACGCGGACAT 18211 36 100.0 34 .................................... ACGTCCGAGACCATCGCCGCACTTCCGCTGTCGG 18281 36 100.0 37 .................................... ATCCGCAGCGCGGTGTAGGACTTCCCGGCGATCTTCA 18354 36 100.0 39 .................................... CGCACCGACCCGGAAGCTCGGAGCCGGTCCCGGGCCCGG 18429 36 100.0 38 .................................... CAGATGTTCATCTCCGCGCTGGAGATCGACGAGGCCAA 18503 35 97.2 37 ....................-............... AGGTCATCCTGTGCAGCACCCACCGCAGCCGACGCAG 18575 36 94.4 39 ........A..................G........ TCGAGCCCTGCCGAGGCGAGGGCGGCGAGCACGGTCGCA 18650 36 94.4 0 ............................T......T | ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 98.8 37 CTCTTCCCGGTCGCCAAGACCGGGCTCCGTAGCGGC # Left flank : CAGACAAGGGCTACAGCAGCGAGGCCTTCCGTCAGGCCTGCCGCGAGCGCGGCACCGAACCGATCATCCCCAAACCCAAGACACCCGGTATCAAAGGCCTGGGCAGTCTGCGCTACGTCGTCGAGCAGACCTTCGCCCTGCTTCATCAGTTCCGCCGCCTGGCCGTGCGCTGGGAACGCCGCCTCGACATCCACGACGGCCTCGTCAGCCTCGCCTGCGTCATGATCTGCTGGCGCCGGTTGATCAAATGGACCGCATAGAGATCGCGTTAGGAGCTTTACGTCGGCAAGGCGAGCGCGGCTCCTCCAGCCCCCGGAGTGAAAGAAGTCTGATGCGAGCGCTCAAATCCGACGTTCTTTCCGGGGGAGCGCTCGCGCCCATGTCAGGCAGGGTTTTAGGCGCACCTCCATCTAGATGCCTGGATTAGATGCTGATAGTTGGGTGGAGTTCTCGCGAGATCATGCATAACAGCAGCTCAAGTGCTGTGAATTTAGCGAGCC # Right flank : TATGGGCAGCAGCGCTGGTCACATTTCTGGTTAGATGCGTTCCCGGTCATCGCGATCGGGCTCCGTGGTTGTCTAGATCGCGATTGCCTCGTCTTGCGTGCGCCCTGATGTGATGTTGAGCGGAAGCCTTTCATGGGCAGTAGCGCTGACACCAGCAATGGTGTTCTACCTCTTCTAGGTGATTCTGGCTCGGCTCGTGGTACCGGCGAGCAGCCCGCGGCTAGCCGTAATGATCTAGATATTCTTCCTGCGTGAGGTCGCAGTGCCGCCCGACTTAGATAAATGATCTTAAATCAGATAGATCATGTCGTGGTGGATGGCGGAAAAATTTGTCGGTGGTAGGCGCGATAGTGGCCGGGTCATATCCAAATTCTCCGCTGGAGGGTTGCTCGGTGGGCGTGGAGAGTGTGTTCGAGGACGTCTTGTCGGCTGTGACATTGGCTGGCGATCGTGCTGTGTGGCGGGTGGTGTCGACTTATCAACCGGCGGGTGGGGAAGGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCGGTCGCCAAGACCGGGCTCCGTAGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 30774-27782 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOMU01000113.1 Actinoplanes regularis strain NBRC 12514 sequence113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 30773 36 91.7 41 .....C.............G..A............. GCACGGGCACGGGCCTCGGTGGTGGTACCGCGAGCGGACTT 30696 36 91.7 35 ....T..................C......A..... CTCGGCTCCATCGAGCACCGGGCCGACGACGCAAG 30625 36 97.2 37 ..................A................. AGGCCCTCAACCAGTCCGGCCTGGTGGCGATCCAGTT 30552 36 94.4 35 .....................CT............. ACGCTGGCCGCGATCAAGGACGAGAACGTCCACAT 30481 36 97.2 34 ........A........................... TCGCCTGGTTCGGTGCGATGCACACCCAGATCTA 30411 36 100.0 37 .................................... TGCCGCGCTGACGCCCGGGAAGCCGAGGAGACCGCAT 30338 36 97.2 36 ......................A............. CACTGACCTCGCCACGTGGGCTCCTGCTCGGGGCAC 30266 36 97.2 38 ..........T......................... ACGGGCAGCGATGCGACTCGGTGGTGGCTGGACACGCC 30192 36 100.0 37 .................................... TTGGGTGTTCCTCTTTACGGTCGCCCTTGATGGTCGT 30119 35 97.2 35 ...................-................ CCGGGCAATCACGACCAGGCCGTGAGGATCGCGGG 30049 36 97.2 37 .........C.......................... TGGTCGGACCGGATGGTCAGGGCCTCGGCCGATACGG 29976 36 100.0 37 .................................... CCGTGACCCCGACGGAGTTCCGCCTCACGATCCTGCG 29903 36 100.0 34 .................................... TCGGCTCGATGTTCAACGCTGACAAGCTGACCTT 29833 36 100.0 34 .................................... GCGGCTACCGCAAGGTCGCCGGCGCGGTGAAGCG 29763 36 100.0 36 .................................... GGGCCAGCGTGTTGTACGGCCGTGGGATCTCACCAG 29691 36 100.0 35 .................................... CGGTGGCCGAAGGCGTTGTGGCGCGCTCGGTTGCT 29620 36 100.0 37 .................................... GCGAACAGGTCAAGTACTGGCGCCGTAAGCGCGGCCT 29547 36 100.0 35 .................................... CCGACGCGCACGAGTAGGTCGATCGCCTGGAGGTT 29476 36 100.0 37 .................................... CCAGCTCGGCGCCGTAGTAGTACTCGTCGCCGTGCTG 29403 36 100.0 36 .................................... GATCCAGGGCATCGCCAAGCGGGAGCTGGCGGCGTA 29331 36 100.0 37 .................................... CACCACAAGACGCGGGAGGTGACCATGGCCTGGCCCG 29258 36 100.0 38 .................................... GTCGGCAAGACCTGCTCGAGGTGCTTGGTCCTGGCCGG 29184 36 100.0 36 .................................... CTTCCAGTTCTCGGACAGGCCCATCGTGCCGAGCTT 29112 36 100.0 35 .................................... TCGTCGGAGGACGTGACCGTCTGGAGTTACACGGT 29041 36 100.0 36 .................................... GCGAACATAGGTACGGACCTGGTCGCCGCAAAGCCC 28969 36 100.0 36 .................................... GCTGGACGCTGAAGGAGACGACGTGACTGCGATCGC 28897 36 100.0 38 .................................... GCGCGGGCGTTGCGAGCGGCGTAGTAGGTGATCTGCGA 28823 36 100.0 35 .................................... TTGCGATTCGCTGCCTGACGCGCACGCATGGCCTC 28752 36 100.0 34 .................................... AGGAGCGGACCACCTGGCAGAACCGGGAGTCGCA 28682 36 100.0 41 .................................... GCCCGGTGGTCTTCGGTTTTGATACTGGCGAGCCGGACACC 28605 36 100.0 35 .................................... GTGTTGTCGACCAGCGCGGCGTGCCGGATGCCGTC 28534 36 100.0 34 .................................... TCGAGACGCTGCCGGACCTCACGGCCCAGCTCCT 28464 36 100.0 36 .................................... CGGCCGCGGCGGAGCGGCGGGAATGCCACCGGCGAT 28392 36 100.0 35 .................................... GCGGTCGTCGTCGCGGCCTGGCCACAGCTGACCGG 28321 36 100.0 32 .................................... CTCCCCAGTGCGGGGGTGGACACGCGAAGGAT 28253 36 100.0 37 .................................... GCAGCGGTCCTCGGCCTGGGTCGCCTCGACCAAGCTC 28180 36 100.0 38 .................................... CCGCGTGGAGCCAGGGGAGCGGCTGTGGTGGGAGCGGC 28106 36 100.0 35 .................................... ATCTTGTCTTTGGCGCCGCTGGCGAGGCTCGCGCC 28035 36 100.0 37 .................................... GACCGACGAGGCCCAGGAGGCCGAGACCGGCGCAGAG 27962 36 100.0 37 .................................... CGGTCTCAGGAAGCGCGGCCTCGGCGAGCATGGACTT 27889 36 100.0 36 .................................... AGTTCTGGGAGTCGATGCGCCGGTCTACGTCCCGAC 27817 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 42 36 99.1 36 GCCGCTACGGAGCCCGGTCACGGTGACCGGGAACGG # Left flank : ACGTTGACGAGGACAGCCTGCCGTGCGACGACGCCACGGATGGCGGCCCCGCCGGCCGCATCTTTGCTGAGAAGCGTTACCTCATCGTCCCGCCCGGCACCGGTGCGTGGCCGACTGAGCAGATCATTCCGACACTGGTCACCTTCTGGCAGCAGAAGGGCTACAAGGTCCACACGGACAAGCGCAGCGAACCGGAGCCGCGCTACAGCGTCGAGACGCCCGACGGCTACTTCGTGACCGCCAATGCCTGGAGCCGCGGCGACCACCTCGACATCACGCTCAGCAGCGACTCCCCCTGCATCTGGGAAAACGGCACCCCGGACCCGCAATAGTCTTCCTTCGCCAGCCAACAAGTCGAGCCCGATATCAACATCATCAAAGGCGGGCCCCGGACAGTCACCGTCGGACCCCCATGAACGGAGCATCACAGTCCACCTTCACCCCCGAGCCTGCCGCGGTGACCGAAAAAGCCAAACAGCATCAGTTGCGGGGTGGCGCCA # Right flank : GGCTCGCTTGGATCATGGGTCTTGAACTGCTGCTTTGCGCGCGCTCGCGAGGGCTACGTCGGAGAACCTCCCTTTGATTCAGGTATTTGGATGTGATTTGGGCCTGGGTGCGGTGTGACCTGGGCGCGAGCGCTGCCCAGGGATTGGGGTGGGACTGGAGCGCTCGCATCAGATGATTCTTGTCGCCTGTGATGGCAGCGGACGTTTCTTGCCAATGAAGGTGAAGCGGGCGGCGTCCGTCTCGCCGAGGTCGACGATCACGATGGAGTCTTCGTTGAGTTTCATGTGCCGTTCGACTTCGGCACGGGCGTAGACAAGCTCTGTACGGCTGAGGTCGCAGATGAACACGGAGTATTGGAGGCGTTCGCCGTAGGACTCCATGGTCTTGCAGACTTGCCGGAGTCGCTGGGGTTCACAGATGTCGTAGGCAATGAGGAATCGTCGTCGGGCCATGGGTCACCTTGTGGTGAAGGGGGTGTAGGCGGGCAGTTCTCCGGTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTACGGAGCCCGGTCACGGTGACCGGGAACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.60,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //