Array 1 107715-106116 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAH01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3731 NODE_1_length_473813_cov_92.483055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107714 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107653 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107592 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107531 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107470 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107408 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107347 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107286 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107225 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107164 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107103 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107042 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106981 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106920 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106859 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106797 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106694 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106633 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106572 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106511 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106450 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106389 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106328 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106267 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106206 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106145 29 96.6 0 A............................ | A [106118] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125767-123847 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAH01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3731 NODE_1_length_473813_cov_92.483055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125766 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125705 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125644 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125583 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125522 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125461 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125400 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125339 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125278 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125217 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125156 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125095 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125034 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124973 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124912 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124851 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124790 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124729 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124668 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124607 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124546 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124485 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124424 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124363 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124302 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124240 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124179 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124118 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124057 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123996 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123935 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123874 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //