Array 1 759637-761617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038231.1 Swingsia sp. F3b2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 759637 29 100.0 32 ............................. TAGCTTCATTGACTGTCTTGAAAAGATTTTTC 759698 29 96.6 32 ............................C TCGCGCGCTATCTTGGCGGCTCGCTTGTGCAC 759759 29 96.6 32 ............................C TTCAAAGTTACCTGAACGTTTTGAGCCAGCTC 759820 29 100.0 32 ............................. CCGCCACTATGACGGTGCCGCCGGGCTTTGGC 759881 29 96.6 32 ............................C TTGAACGCCTGGATCACCAGTTTTGTCCCGCG 759942 29 96.6 32 ............................C GCGGCGCTGCCTTTTTTTTAGTGAAGGGTCTA 760003 29 100.0 32 ............................. CACTGAAATCCCTGACCTGCGCAAGCCTAAAA 760064 29 96.6 32 ............................C GCCTCCATCTGGATTGTCGGGTGGGGTCCGCA 760125 29 100.0 32 ............................. TACGTCACTGAGCTTCAAAAGAATGCCCTACG 760186 29 96.6 32 ............................C TCAAACCCAACAACGTCATCAACCTTTACGGT 760247 29 100.0 32 ............................. GAACCACTGTTCGAGAAAACGTTCCTGAATCG 760308 29 100.0 32 ............................. GCAACACATTTTGAGCATTTTTGCTTAAATAA 760369 29 96.6 32 ............................A TCAGCTGTTGAATGGCTAAGCCTGATTTCTGC 760430 29 100.0 32 ............................. GACTTTAAAAGTGACGATGAAGCCCAGGAGTT 760491 29 96.6 32 ............................G TCACGCTGCTGCTGATGGGGCCTAAGGGTAAG 760552 29 100.0 32 ............................. CATCGTAGAGGCCTCAGGGAAAAGGTGGCGAT 760613 29 100.0 32 ............................. GCGGCCGCCCTGGTTAACCTGCGCGATCAAGC 760674 29 100.0 32 ............................. GAAGCTGGGGAAGCTACACATTTCACAGCATC 760735 29 96.6 32 ............................G ACAAAAAAGGCGCGTGACGCCTGGGCAGCGGA 760796 29 96.6 32 ............................C TCGACTGGCAGGGAGTAATCATCAAGCCCTTG 760857 29 100.0 32 ............................. CAGGATGAATGGCAATGCCGCATGAAAGGCAT 760918 29 100.0 32 ............................. CCCTCTGTGCGGCGCCTCATCGGCATGATTCC 760979 29 100.0 32 ............................. GAGAGCGTGACGTATGTTGCCGGCTTCGATAT 761040 29 96.6 32 ............................C TTTGAACGCCGGCACTCTTTAACCTGCGCCGG 761101 29 96.6 32 ............................C ATAGGCGATCGGCTGGTAGAGCCCTTCCTAGC 761162 29 96.6 32 ............................G CATCTGCGTCCAGAAGCCTTCACCCTGGCGGT 761223 29 96.6 32 ....T........................ CATTTCCCACGCCAGCGCGCAGGAAATCGCAA 761284 29 100.0 32 ............................. GCCACCGTCCCCGGCGTGACGATGCGCCACCC 761345 29 100.0 32 ............................. GAGCTTATACGTCTCATAAGAGATAGCGTTCG 761406 29 96.6 32 ............................G CACGTTCTTAGTGAGGATCAGGCCATTAATGA 761467 29 96.6 32 ............................G GAGATTCTTTACTCCCATTTTGGTGTTACTAC 761528 29 96.6 32 ............................C TGGGTGAAGCCCGCGTGAAAGCCATGGCTGTG 761589 29 89.7 0 ......................CA..T.. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 97.9 32 GTCTCCCCCGCACACGCGGGGATGAACCT # Left flank : CGCCTTGAGCGCGCACAAGGTCATCCCAGACATGATCAAGCGCATCAAAGCGCTGTTCGACAAGGAAACAGCCTCTGACATGCAGCAAATAGGCAAACCGCCATGCCCATGACCATTGTCGTGACCAGCAATGTGGAGAGCCGTTACCGTGGGTTTCTCACCTCCATTATGTTGGAGGTCGCCGCTGGCGTTTACGTGTCCCCACGCATGTCTGTGGCTGTGCGTGAACGCACTTGGAAGGTTCTGACTGAATGGTGGTGGGCCTTGGGCAATGGCAGCCTGACCATGGTGTGGCCTGATAAAAATTTGTCAGGTGGGGTGGGCATGGCCCTTTTGGGGGAAGCGCCAAAAGACATCATTGACGCTGATGGCGTTCTCCTGGTGCGCCGCATAATGCAGGAAACCGCCACTCCGATAGCTGGTGGGCCACCTTCTCCCTCTCAGGAAGAGGCTGTTCAACAAACCCTTGATAATGAAGAACAGATCCTATAAATGCAAGA # Right flank : TCGTCATTCTGTTAAGCTGGTTTGATCGTTAAGCAGGTGGGTGTTGGTTGAAAAGCCAGCCCCCAGGTTCTTGCTTTGGAAGACAGTGAAATGGAAACGATCGTCTCAAGAATTCTTAACAATCCGCTTTATTGGTGGCTATTTTGGGTTTTGGCAGTCATGGCGGGCGTGTTCGGCCTGGTCATTGGCTACAGGTTTGGAACTTCATTATGAGTGAGAAGGTTCCCAACGCGTTTGGATGCCTGTTGAAAGCCGCTGGGCTATCCCGTGAAACGGCCAGCATTTATCTGGAGGTCTCTCCCAAAACGTTGGCACAATGGTTGTGGAAAGGGGTGAAACCACCCCATGGCGTTCTGACTGAGCTAAACCAGCTCATTGAGAAAACCCAGCAACAGGCTGAGCTGTTGGCGGAGATGGACACCATCCCAGTTTCTTTGACTGAGGAACAAGCCCAGCAAGCTGGCTGGCCTGGCTTGGACACGGAACGGCATTGCTTGGGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCGCACACGCGGGGATGAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 762235-762508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038231.1 Swingsia sp. F3b2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 762235 29 100.0 32 ............................. GGCAACGACATCCAGACGCCCTACTATGACGC 762296 29 96.6 32 ............................T CCTCACTCAACAAGCGCCGCATCGGGCGCCGT 762357 29 96.6 33 ............................A GTGCAAGGTAATCAAAAAGAACCTTGCCACCCT 762419 29 100.0 32 ............................. GTCCAGGCCTCATCAATGACCAGGAGAGCCGG 762480 29 86.2 0 ..............T.........G.TT. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 95.9 32 GTCTCCCCCGCACACGCGGGGATGAACCC # Left flank : ACAATCCGCTTTATTGGTGGCTATTTTGGGTTTTGGCAGTCATGGCGGGCGTGTTCGGCCTGGTCATTGGCTACAGGTTTGGAACTTCATTATGAGTGAGAAGGTTCCCAACGCGTTTGGATGCCTGTTGAAAGCCGCTGGGCTATCCCGTGAAACGGCCAGCATTTATCTGGAGGTCTCTCCCAAAACGTTGGCACAATGGTTGTGGAAAGGGGTGAAACCACCCCATGGCGTTCTGACTGAGCTAAACCAGCTCATTGAGAAAACCCAGCAACAGGCTGAGCTGTTGGCGGAGATGGACACCATCCCAGTTTCTTTGACTGAGGAACAAGCCCAGCAAGCTGGCTGGCCTGGCTTGGACACGGAACGGCATTGCTTGGGTATGGCGTTAGCTAAGCGACTGCAGGCCAATAAGCCACTGCCCACTTTTGTGCCTGCCCACCATGAGTGAGGTTTCTGGAAACCTCATCACAGCGTGGCACCGGGCTAGGGCACGTCTC # Right flank : CATTCAAAAAAGCAAAAGCCTTAAGGGGCTGACCATCATGATTTATCGTCAGGCAAGTATTCATCATCACAGGCGCAGGAGGCATTCACCACATCCATGGCGCCTTGGCAGGAGCGCAGGATTGCGGTGGCTTTCTCTGCCAATTCCCGCTTTTCCTGCCCTTCCTGGGCTATGGGGCCTTGGTTCATTGCGGCATGGTTGATGGCTTCAACCAGAACGGCGAACACGCTGTCTGGCGGCAAGGCGGACAACGTGCCCTGCACCAAGTGCATGGCGCTTGGAGTGGCGGTGATGGCATGGGGTTGCAGCAGTTGGGCCAGTTTGCCCTGCCATGCGGCAGCTTCCGTCATGGCGGCGCCATTGACCATCCAGGTGCCTATGGCTGGGTCAAGGGCTGCCAAGGCCACGCTGAGGACGCCATCAAGGGGCATGGCGGCCAGCTTACGCGCGGCAGCTGCCTGGCGACTTTCCAGCTGGTTGGAATCAGGTGTCATGGCTTG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCGCACACGCGGGGATGAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1912132-1911804 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038231.1 Swingsia sp. F3b2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1912131 28 85.7 32 CGG.T....................... CGTTAAGTGCTTATGCGCGTAGTGATACTCAC 1912071 28 100.0 32 ............................ GCTCCCCACGTCAACTTCACATTATTCCACTG 1912011 28 96.4 32 ....T....................... ACACTCTACTGCGCGGACGCCATGGACGTTCT 1911951 28 96.4 32 ....T....................... TTGACGTGTAGGAGCACGCCAGGCGTTGGGCA 1911891 28 100.0 32 ............................ GGGCAGTGCTTGACACGCCTCTCCCTTGCCGT 1911831 28 71.4 0 ...T....TTA.T....T..T.T..... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 91.6 32 GTTCCCTGCCGCACAGGCAGCTCAGAAA # Left flank : CGGAACCGATTTAGCCTGAAAGGCGTAAAAGCCAGGCCTGTCGCAGTGCCGGGCGTAAGCCCAAACGCAGAAAAGGCCTGGCTAACCGGTTTCAAGAGCGGCGCCATCTAAGGCCATAGGCCTGTGAAAGCCGCTGCTTCTTGCCGCTTGCAACTCATGCGGCGCGGTATCGCAGCGGCTTTTATGTGGCGACAAGGAAACCCAACCAGCACTGCCCTTTCTGAGCTGTCTGTGGGGCACGGTGTAGCCATCAAACATACCTTCCATTCTATCCCTAATTTTGAGCGCCTTGAAAAAACGGCAGTTACGGGCTGTCGCCAGAACTGGCTTGAAGAGAGGGATAGATGGGCCCATAGTGCATTTACTGGCTGTTTGCAGACGTTGAAGCGTGAATCAGTTCTAGTTCCCTTATCGCCGCCTATTAGCCCGAAGACTTACTACGCTTGAACTATGTTCTGCGCTCCGTCACTTCGGGCTTTAACGGGCTTCGCCCTATATGG # Right flank : ATTCCTGGCCATCTGGGGGGTAAGGAAAAAATGAATAAACAATCTGAAACTGACCTAGATAAACGTCTCAAAGAAAAACAAATCGAATACATAGATTTCAAGAAATGTCGTGACATTGTCCTAGTTGGATGCACTTCCCTGTTAATTATTATATTTTTTATAGATTATTTAACAAGATAATGATGGCGGGTAGGAGTTTGGAATATATTACTCTGAACACAGAGTGAAATTTCACTCACACAACTCTGGCTCGGTTATTTAAACAGTCTTTTCGGTTGAGACTCTTGGACTGGCTATGTGGGCCGCCAGGCCAAACAGCGTGAAACCGGGGCTTCAACAGGCCTGCGGCCTTATGCGGGGTTCTTCTTGAACCGGTTGGCCACGCCTTTACTGCGTTTGGGCTTACGTCCCTCTTGAACCCTTAAAGCCGGAGCGGTGACCCATAGGGCAGCGCGGGATCTTAAACACACTCTTGCTGTACGAACCCGGCTAGGGCTTCT # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : GTTCTCTGCCGCACAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1922207-1921276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038231.1 Swingsia sp. F3b2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1922206 28 100.0 32 ............................ ACTGCCCCGCGTGTGAAGGATGGGGCGTGACG 1922146 28 100.0 32 ............................ GACTGCGAACAGGGGATTTGTCGCGCTGTCGT 1922086 28 100.0 32 ............................ AGTCGGCTGTGCCTGGGACGCTGGGGCACCTG 1922026 28 100.0 32 ............................ TGACGGCAACCAGGATGGTGTTTACTGGATTA 1921966 28 100.0 33 ............................ TGGTACAGACAACAACTGGACAAAGCTTCCATT 1921905 28 100.0 33 ............................ TCCAGGGGTTTAATAAGCATTGAGCCGGAGAGT 1921844 28 100.0 32 ............................ TTTGTCACGGCGAAAGAGACAGACCCTTACCC 1921784 28 100.0 32 ............................ GACCGCAAACAGGGGATTTGTCGCGCTGTCGT 1921724 28 100.0 32 ............................ GCGGAACCTGGTCAACGAACTGGCCGCGCAGC 1921664 28 100.0 32 ............................ TTGCAAAAACTGCATTAGTCGAGGCGTTCAGT 1921604 28 100.0 33 ............................ GGTGAACAGTGGCACCCTGAAAGGCAGCCCCAG 1921543 28 100.0 32 ............................ GCTGTAAGCGGGGTAGCCCAGCATGCCCGTTT 1921483 28 100.0 32 ............................ TGCCCGGCATCGCCACCCAAGCGCAGCTTGGT 1921423 28 96.4 32 ..........A................. GTAAAGATGGAGGGAGGACACAGGAAATCGGC 1921363 28 100.0 32 ............................ ACTCATCTGTCAGTACTGTGTTCCCGGCCGTT 1921303 28 89.3 0 ...TC.........C............. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.1 32 GTTCTCTGCCGCACAGGCAGCTCAGAAA # Left flank : AAGAAAGGCTGGCTGCGTGCTCCGTGGCCAGCCTTTTTCATGTCTCCTTGGTGAAGCCGCCTTAGTGAAGAATGGGAAGGTACCCAGCCAGCTTAGGCCCAAGGGGGGCCGGCACGCTGTTACTGGTTCTGCACAATGACAGGTTCTGCCCAGCCCACACGGGCATAACAGGCCCTTTGAAGCCCTCCGAAACGTTAAATATGGCATAAAACTTAACGCCAAGGAGCATAATTCCGCGTGGTTCGTTGTGTGGTAGAGGCAGATTTATAGTTGGTTTGGCAACGTTTTTAGGGAAATCATCTCCAACAGACTCTTCTCAAGTTCGTTAACCTTTTCGCCTCATTCATGCCTTGGTCAGCGCCATTTCAAACCCTCTTTTTTCACCACCCCGAAAAATGGCGGCTTTTAAGGTTTTTCAAAGAAGTCTTCCCAAAAGAGGCAGAAGGGCTTAATATGCCTTCATTGGCTGTTTACCGCGCGCTTTCAGCCAACACCTTCTA # Right flank : GGGGCAGTGCTGGTTGGTGTTCCCTTATCGCCGCCTCTTAGCCCGAAGGCTTACTGCGTTTGCGCTTACGCGCTGCACTCCGACACTTCGGGCTTTAACGGGCTTCGCCCTATACGGCGGCTCTTATCTATCGTCGCCTGGGAAATGTTGCGCCTGAGGGCAGGGATGGCCATGGTTAGGTAGGGCGTTCTAAGGAAAGCGCTGCCAACAGCAGAGAGGAAAACTGTGGCGCAGAACGTTCACATCAGCAAGCTCACCCTGACGGACTTCCGCAACTACACACGCCTATCATGGCGCCCTGGACCTGGCCTCACCATACTCACAGGGCCTAACGGGGCCGGCAAAACCAATGTTCTGGAGGCTGTCTCCCTCCTGGCGCCTGGGCGCGGCCTGCGCGCGGCCCCCTTAGGGCGCCTGGCCTACCAACCCCCTGGTGGGGAAGGGCTGAGGGGGGGGTGGGGTGTTGCTGCGGAATTGACTGTGGAAAGCCCCCATGGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //