Array 1 242146-241341 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFXP01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain E90C1 NODE_4_length_358378_cov_15.873273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242145 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242084 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 242023 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241962 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 241901 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 241839 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241736 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241675 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241614 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241553 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241492 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241431 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241370 29 96.6 0 A............................ | A [241343] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260259-258278 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFXP01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain E90C1 NODE_4_length_358378_cov_15.873273, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260258 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260197 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260136 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260075 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260014 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 259953 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 259892 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 259831 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 259770 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 259709 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 259648 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 259587 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 259526 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259465 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259404 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259343 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259282 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259221 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259160 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259099 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259038 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 258977 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 258916 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 258855 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 258793 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 258732 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 258671 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 258610 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 258549 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258488 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258427 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258366 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258305 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //