Array 1 56428-54690 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOU01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712395, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56427 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 56366 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 56305 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 56244 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 56183 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 56122 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 56061 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 56000 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 55939 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 55878 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 55817 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 55756 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 55695 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 55634 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 55573 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 55512 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 55451 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55390 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55329 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 55268 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 55207 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 55146 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 55085 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 55024 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 54963 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 54902 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54841 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54780 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54719 29 93.1 0 A...........T................ | A [54692] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 74917-72935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOU01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712395, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74916 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 74855 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 74794 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 74733 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 74672 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 74611 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 74550 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 74489 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 74428 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 74367 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 74306 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 74245 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 74184 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 74123 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 74062 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 74001 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 73940 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 73879 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 73818 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 73757 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 73695 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 73634 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 73573 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 73512 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 73451 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 73389 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 73328 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 73267 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 73206 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 73145 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 73084 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 73023 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 72962 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //