Array 1 243964-242355 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFD01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1770 1770_2_length_693074_cov_60.8711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243963 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 243902 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 243841 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 243780 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 243707 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 243646 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 243585 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 243524 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 243463 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 243402 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 243341 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 243280 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 243219 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 243158 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 243097 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 243036 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242975 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242914 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 242811 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 242750 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 242689 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 242628 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 242567 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 242506 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 242445 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 242384 29 96.6 0 A............................ | A [242357] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261348-260222 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFD01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1770 1770_2_length_693074_cov_60.8711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261347 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 261286 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 261225 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 261164 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 261103 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 261042 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260981 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260920 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260859 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260798 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260737 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260676 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260615 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260554 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 260493 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 260432 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 260371 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 260310 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 260249 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //