Array 1 25444-27364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOMR01000019.1 Escherichia coli strain MOD1-EC6983 MOD1-EC6983_19_length_91039_cov_68.9093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25444 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 25505 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 25566 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 25627 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 25688 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 25749 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 25810 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 25871 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 25932 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 25993 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 26054 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 26115 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 26176 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 26237 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 26299 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 26360 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 26421 29 96.6 32 ..................A.......... GAATACCGATTCATAACGGCGGAAATGTGGAT 26482 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 26543 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 26604 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 26665 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 26726 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 26787 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 26848 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 26909 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 26970 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 27031 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 27092 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 27153 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 27214 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 27275 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 27336 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 144687-144898 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOMR01000012.1 Escherichia coli strain MOD1-EC6983 MOD1-EC6983_12_length_145140_cov_60.4829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144687 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 144748 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 144809 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 144870 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //