Array 1 83-1250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZG010000024.1 Pseudomonas aeruginosa strain PA15-49 NODE_24_length_1898_cov_97.652938, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83 28 100.0 32 ............................ GCGTAGAACTCAGCTTCGAATGAACGCCGGGG 143 28 100.0 32 ............................ GTGGCACGACCGTGACCTGGGATGTGCCGACA 203 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 263 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 323 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 383 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 443 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 503 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 563 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 623 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 683 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 743 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 803 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 863 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 923 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 983 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1043 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1103 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 1163 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 1223 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 275-582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZG010000018.1 Pseudomonas aeruginosa strain PA15-49 NODE_18_length_96307_cov_62.719329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 275 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 335 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 395 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 455 28 85.7 8 ...................C..GT.G.. CCGCACGT TTCC [477] Deletion [491] 495 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 555 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 27 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.49, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9918-9111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZG010000018.1 Pseudomonas aeruginosa strain PA15-49 NODE_18_length_96307_cov_62.719329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9917 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 9857 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 9797 28 100.0 32 ............................ TTGCCCGCTCAGCGCTCAGGAACGACTGACCC 9737 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 9677 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 9617 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 9557 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 9497 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 9437 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 9377 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 9316 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 9256 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9197 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 9138 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //