Array 1 91409-89550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBH01000009.1 Escherichia coli strain MOD1-EC6184 MOD1-EC6184_9_length_100034_cov_19.6776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91408 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 91347 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 91286 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 91225 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 91164 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 91103 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 91042 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 90981 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 90920 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 90859 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 90798 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 90737 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 90676 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 90615 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 90554 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 90493 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 90432 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 90371 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 90310 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 90249 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 90188 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 90127 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 90066 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 90005 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 89944 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 89883 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 89822 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 89761 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 89700 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 89639 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 89578 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1153-2340 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBH01000124.1 Escherichia coli strain MOD1-EC6184 MOD1-EC6184_124_length_2488_cov_13.4405, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1153 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 1214 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 1275 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 1336 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 1397 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 1458 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 1519 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 1580 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 1641 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 1702 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 1763 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 1824 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 1885 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 1946 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 2007 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 2068 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 2129 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2190 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 2251 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 2312 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //