Array 1 9559-9051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPM010000031.1 Pseudomonas cichorii strain LCYJ14 Scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9558 28 100.0 32 ............................ TGCACCACGCCCGGCGTGCCATCCGGGTTTAC 9498 28 100.0 32 ............................ AGGCAGCTCGCCTGATTTCAGATCTAAAGAGT 9438 28 100.0 32 ............................ GACTTCGGGGGGAATGACCTGCTCGGCAATGA 9378 28 100.0 32 ............................ TCAGACTGGGCAAGCGAAGAGGATAATGCCCG 9318 28 100.0 32 ............................ GACAAAGGAATGGCTTGCAGCGAACCCTGGCA 9258 28 100.0 32 ............................ AACCGCTGGCGGGGTGGTAAACGTGATGGTGC 9198 28 100.0 32 ............................ GGGATAAGAATGTCCCAGTGCTGATTGACGTC 9138 28 96.4 32 .A.......................... AACAGATAACCGTCAGCCCGCGCCCGACCTCG 9078 28 85.7 0 .......................C.TTC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GAGCCCTGTGGAATACAGGACTCAGGCTGCGAGCTAAAACTCTCCAACTTTTGGGGGGCAGTTCAGGTCCGGCGCCAAACCACGACTTAACGCACCCTCTTTTCGACCCTCTTTTTTCAGACTCCGCTACCCCCTTTAAAATCAATAACTTACGAGAGCCACAAAAAAGAGGGTAAAACGGCTTAAGATAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCT # Right flank : GGGTTGACTCTCTTCATTGGAGGTGAATGGGGTACATCAAGAGGGTAGCTAAATCCTTGACTGGATTTCGGTCTTCAAAAACGACAAAGGCACCTTCCGGTGCCTTATTCACAAACAGGTCAGCTTGTCATCGCCATAAACCTGTCTGGCTCTACGATTGCTGGTTGCCCAGGATCCTTAGAGTCTCACAAGCCCCTTACGGGAACGAGACAATCATATGTATTACGCTAGCGTAATACAACCTTTCGCTATTATTTCCTGACGTGTGGCCTGTCATACCGCCTCACAGCCCTAGCGCCGATCGTACACCGACCTGAATAGCAGTGAACAACTCCTCAGGAAGAGGTATTGCTAGATATTCCCTTTTGCCCGTATGACGATTCTTCACTTTGATCCTATCCAAACGGGCGAGTGCAACGGTGTAAATCATGTCGCATTTCGCCCAGCACAAGGTCTGTGGCCCAGGTATCAACGACTCGAATTGGATATGGTGGTCAAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15071-15879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPM010000016.1 Pseudomonas cichorii strain LCYJ14 Scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15071 28 100.0 32 ............................ AGCATACCGATCTGAACCTAGTGCTTGAGCCC 15131 28 100.0 32 ............................ TCCATTCGCCCGCCAATGCCATATGCCGAACG 15191 28 100.0 32 ............................ ACAAACTTGAAGGCATAACCGCCGCCACCGGC 15251 28 100.0 32 ............................ CAGTGTCACTAGGCATGAGGCCGACTGCTTTC 15311 28 100.0 32 ............................ TGAGCGGGGGCTTCAAGCCTGTAGGGTACTCA 15371 28 100.0 31 ............................ GCAACGCTTGCTCAAGCCCTTTCGTCGAAGA 15430 28 96.4 32 ...........................A ATTTCCCGTACCACTGTCTGCATCACCTCCTT 15490 28 96.4 32 ...........................A TAAAAACTGGAGCAGCACATGAGCACAGCAGA 15550 28 96.4 33 ...........................A TGCTGGCAGATCCAAGCGGTGGCTGCGTTCATA 15611 28 96.4 32 ...........................A TTACAAAACTTGGCTGGCCGAGATACGCCGCC 15671 28 92.9 33 ......................T....A AGTGGCGATCCAGCCGGGCATTGCCTGTATGCT 15732 28 89.3 32 ............C.........T....A ATATCGCCATCTTCCCAGTAATAGAAATCCAC 15792 28 85.7 32 ...........CA..A...........A TACGACCCGGTCATTAATGGTCATCTGCTCTC 15852 28 75.0 0 A..A.......AAC..........C..A | ========== ====== ====== ====== ============================ ================================= ================== 14 28 94.9 32 CTTCACTGCCGTGTAGGCAGCTCAGAAT # Left flank : GTCAAGAAAGGGTTCATTCTTGGCCACCGTAGACAGATATTCCCGGGGAGTGCGACAGCGCCGTATTTTTTGATAAATCACTTTGTGCAGGGCAGCTTGCTGGCGACTTCAATATACAGCCGCAGAATATCTGCCGCTTTTCAGATTTTTCGCCAGCAAGCTGCCTCCCACAAGTGTTGTGTATGCCTTAACTGATCGGCATTACTCCGTAGCGACTTCAGTAACGAAGACGGTGCTCAACCGACTCGGATGTACCACCAGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGGAATGCTGATTCTGACCCTATTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGTGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : ACACTCAAATCAACCACCCAAAAAACCCATAACCAACTGATCTACATAAATTTAAATCCAAACCTGCAGAAGCACGCCTGCCCACAACAACCCTTCTGTAATCCACTCCCTACAAGAACCGCAGACTCATCTTTCTGACTCACGACCATCCCCAACCTCAAAAAACCTAAAGCACCGCCTTACGCTTTCGGCTATATACATTCCCTCTCCCCGGCCAAGTGCCATTACTGGTTCGATCATGGATGACATCAGTTCTTCGGATCTCAAGACGATCCTGCATTCAAAACGCGCGAATATTTATTATCTGCAGCATTGCCGGGTATTGGTGAATGGCGGTCGGGTCGAGTATGTGACCGATGCGGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAATACCACGACCGTGCTGCTGGGCACGGGGACTTCGGTCACTCAGGCGGCGATGCGTGAGTTGGCCAAGGCGGGTGTGCTGGTGGGCTTTTGCGGCGGTGGCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25186-24557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPM010000016.1 Pseudomonas cichorii strain LCYJ14 Scaffold16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25185 28 100.0 32 ............................ GATTAGGTCTTGAGCCTGGGCGGCAATATGTC 25125 28 100.0 32 ............................ ATATGGAGGACTGGTCGGGCTGGGTTCCCCAC 25065 28 100.0 32 ............................ AAGAACATCATCCGGGGCTTAGTCGAGTAGGC 25005 28 100.0 32 ............................ ACCGCGAGCCATGGGCAACACCAGATCAGGTA 24945 28 100.0 33 ............................ GATCTGAATGCGCTTGCCCAGGGCAACATCCAC 24884 28 100.0 32 ............................ ATTGCCCGCGAACGAGAATTTCGCCGCATCCA 24824 28 100.0 32 ............................ TCGGGCCGCTGGCCGCGCCGGTCGTAGAGCCG 24764 28 100.0 32 ............................ CTTGCGAGGACAGGTTTTTGCGCTCCTGATGC 24704 28 96.4 31 ............G............... CTACGGGCGTTAAGACCCGGATAAATCGCAC 24645 28 89.3 31 ...........C.C.......C...... GATCACTTGAGCATTGAGCAAAGCACTGAGC C [24619] 24585 28 89.3 0 ........T......A........A... | A [24572] ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AAGGTGGCCAGAGCATCAACCGCTTAAATGATGGGTTTCAGGGTAGTAGAGAGTGGGGGTGTTTGCTGCCGAGAGAGCCGACTGATTGGGTAGGATTTATCCGCGAGACGTCATTGCAGACGATGCATTTTTGAGAGCTGAGTGATTCATCCCGGGCTCACACAACCTTGTGGGAGGGGCCTTGGCCGCGACATCCTTCAGACAAAATATGTCAGGAAATGGAGCTTTTCCAAGCCGTCATGTCGCAATTTCCGGTTTCTAGCGACATGTTATGAGGTCATGTCGCTGGCGACGACATATCAAAAAGTACGGCGCTGTCTTGCTGCGGGTGAGCACCTGTATACGGCGGACAGGAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGTTAAAACGGCTGTTGGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGCAGAGTGTCTA # Right flank : AACAAAGCCCTTGTAGCTAGCTCACCTACAAGGGCTTCAATCCATTGCCAAAAGAACATCAAAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCATCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAACGTCTGACCATTGGTACGGCTGCGCATCTGGACGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATACGTTCGCGGGCTTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACCTGCACGCGGCTGACGCGCCGATGCTGTGCGTCAGTGGGGATCGGGCTCAGTTCGCCTACTCGCACATGGTCACGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGCGCACTGCCGTGCAAGCGCAGGCGGTCGCCCAGGCCGGTAGCCCTGCCGCTGATAGCGGGGAAGCTGATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //