Array 1 957272-958693 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070999.1 Limosilactobacillus fermentum strain GR1009 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 957272 36 100.0 30 .................................... AGATAATTATGGGTTATAAAGCAACTCCTC 957338 36 100.0 30 .................................... ATCTTTACGGTTTCAGCATCACCATCTTCT 957404 36 100.0 30 .................................... AACGGACTGATGCAATGTTAGACGCCCTTT 957470 36 100.0 30 .................................... AAAATATACTCAATTTGATACCCAGGGTGT 957536 36 100.0 30 .................................... TTAATGATGCGCTGAAAGGCATTGCCAGTC 957602 36 100.0 30 .................................... ACAACTATTTCAATCTATCGAAATTATTAC 957668 36 100.0 30 .................................... GAGTAACAGTGGCTTTACGCGTGAGAGTAC 957734 36 100.0 30 .................................... ACCAGGTTTTGCGTAACTTGATTGACGCCA 957800 36 100.0 30 .................................... AAGTGGACGGTCAGCTCTACACCATCAGAG 957866 36 100.0 30 .................................... ATCGACAACGTGATTGGGGACCCAATTGTC 957932 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 957998 36 100.0 30 .................................... CCGATCGGTAGAAGTCTTTGGGAACTACGC 958064 36 100.0 30 .................................... AGAATACGTCGAGCAACACAAGAAAGACAA 958130 36 100.0 30 .................................... AACTGGACGAGTGCGGATTTTTTTGTTGCA 958196 36 100.0 30 .................................... GGGAACGAAGCGACTTCCGCGCGATCGAAG 958262 36 100.0 30 .................................... AATTGACATCCGGCTTTTTGAGGCCAGACA 958328 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 958394 36 97.2 30 ...............................G.... AGGCAAAGCCGTCAGAGTGACGACAAATCT 958460 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 958526 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 958592 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 958658 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.1 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1464517-1463207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070999.1 Limosilactobacillus fermentum strain GR1009 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1464516 29 96.6 32 ............................C TAAATGGCCGTATCTGTCGATACCAATTCTGA 1464455 29 96.6 32 ............................C CCAAAGGTAATGGTTGAATTGTTGCCTACCTG 1464394 29 96.6 32 ............................C TTTAACTACGATTTTGCAAAAGAAAAAGCCCT 1464333 29 100.0 32 ............................. TTGGTTATCATCGATTGCCACTCCAGAAGTTG 1464272 29 100.0 32 ............................. AGATGCCCGGTGACACTATTAACCGTTAGAGT 1464211 29 96.6 33 ............................C CTCGTCATTGCCGAAGGTCGTACCTGGCTTGAG 1464149 29 96.6 32 ............................C AGCACTCGTCAACTCACAAGATCAGACGATTG 1464088 29 100.0 32 ............................. ATACTCAAACTTCTTCGTTCCGCCGAAATACG 1464027 29 100.0 32 ............................. TAGACAGACGGTTTTATCCGTTAAGTCAGTTT 1463966 29 100.0 32 ............................. TCCGATCATCGGAGCTTGGCTTTCAAAACAAC 1463905 29 96.6 32 ............................C GACTTTACCGTCGATGGAGCAGGCGGTTTTAA 1463844 29 100.0 32 ............................. GAGCGAGTAATTTTAAGAGCTTTCGCAACATC 1463783 29 100.0 32 ............................. GAAGAAGTCAACACAGATTATCGACTTGTCAA 1463722 29 100.0 32 ............................. AGCCAGATAGACAATCCGGCCAGCGTCACCCT 1463661 29 100.0 32 ............................. AGTAAGAGCATGTATCCAGTTGCCTTCCAGAT 1463600 29 96.6 32 ............................C AAGTGCCATAATCGCCGTTTTACCAATCTTTT 1463539 29 100.0 32 ............................. TACACGAATCAAGGTAAGAATGCACCACAAGG 1463478 29 100.0 32 ............................. TAGGGATGCGTACATTGGCCAGCTTTGGAAAA 1463417 29 100.0 32 ............................. ACATACCCAGTTTATCCAGTTGGCCGGTTTCC 1463356 29 89.7 31 .............G.......A......C GACATGTGGAAGAGGCTGATCGCCATCCCCG 1463296 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1463236 29 79.3 0 ...T.......TC.A........A....C | T [1463231] ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.7 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAATGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGTCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATGAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //