Array 1 83793-78940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOY01000033.1 Methanosarcina sp. 2.H.T.1A.6 scaffold22_1_size97585-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 83792 37 100.0 37 ..................................... ATTGTCTCTCTATATTATACATTAATGATATATATTT 83718 37 100.0 37 ..................................... TCTGTATGTAGAAAGCATCAGGGACGGAGAGGTGAGA 83644 37 100.0 38 ..................................... ATAAAGACTTTGACTCCATACATAATAAAAATAATCAC 83569 37 100.0 37 ..................................... AGAGTAACGAACTCATCAGAGGGTCACAGGTTCGAAT 83495 37 100.0 36 ..................................... ATTTGTCTTTGAGTTTCCTGCTTGCGGAAATCACAG 83422 37 100.0 36 ..................................... TAATGCCGGGGTCGGTAGCTTGCCTTGCAAAATTGG 83349 37 100.0 34 ..................................... TTGGAAACGGGACTGTAACAAGTGGAGCTATTAA 83278 37 100.0 36 ..................................... CGATGGAATTTCTTGAAGAACTATATAGAGATAGCA 83205 37 100.0 37 ..................................... AAATACAATTTATCGCGCTCTTGATACATTCCATACT 83131 37 100.0 36 ..................................... TTATTTCTAATATTTCTTTTGTAGATTCAAAAGAGC 83058 37 100.0 34 ..................................... TTGGAAACGGGACTGTAACAAGTGGAGCTATTAA 82987 37 100.0 38 ..................................... CCTGTGACTTTTCCAGATCTTTTTTCTTATCCAGCTTT 82912 37 100.0 33 ..................................... ACTGTAGTGTAGATAACAAACTATAAATAACAT 82842 37 100.0 37 ..................................... AGGATTGATGAACATGACTGGAAAAATAAAAATCACA 82768 37 100.0 34 ..................................... CAAACGACACCCTGGGATAATCCGCCATTGAACC 82697 37 100.0 37 ..................................... ATTAAGATCATCTCCTTTTAGAAGTCCGTTTCTTCGC 82623 37 100.0 36 ..................................... CCGAGTTAGTGAGGACTTATAATATTGACAGAAAAG 82550 37 100.0 36 ..................................... TCAGACTTGTACTTAGAATAGGCATCGGTGAATTTG 82477 37 100.0 35 ..................................... TATCCCAGTTCAAGAGCCTTTTTGATTTCCGGGAA 82405 37 100.0 34 ..................................... CGGTCTGTTTGCTTGTTATTGCCATAAATGAGAT 82334 37 100.0 35 ..................................... ATCTTACCATTGAATGTTTCTACACTTTCCGCTAC 82262 37 100.0 35 ..................................... CGCTTTTGTCACATAAATCATATTTGTCGGATAGT 82190 37 100.0 35 ..................................... GTATGTATATTAAATTGTATATGTTATGTTATCTA 82118 37 100.0 36 ..................................... ACACTACGGACAAAAGAGGACTTTGACATCAGAAGC 82045 37 100.0 35 ..................................... CTCGCATACACCATATATATCATGTTATCTCTCAT 81973 37 100.0 36 ..................................... TTTCTTACAGGGAAATATCTTGATGGATTGGATAAT 81900 37 100.0 37 ..................................... ATGCCTTGTGTGTGTGGCGAAAAACGAGAACTCGAAA 81826 37 100.0 37 ..................................... AACAACAGGATCAGCCCAGGAAGGAAAAGCCCAGGAA 81752 37 100.0 34 ..................................... GGATCATAAGTTGCCTGCTTTCCAGAGATCCACA 81681 37 100.0 37 ..................................... AACCCATGCCTCTCACCTAGCATCCGAGTATGAACCG 81607 37 100.0 35 ..................................... ATCCACATCTCTTTTCTTCTGTTTTTTCTTACTCT 81535 37 100.0 34 ..................................... TCTTTGCTTTCATAATCAGGCCTACTATGACACT 81464 37 100.0 36 ..................................... CCATTTTGTCCTCAATCCTTTCAGGGGGATTCCCAT 81391 37 100.0 36 ..................................... CATCTCCTGTAATCTTGCTTCGTTCACAATCCTTCT 81318 37 100.0 36 ..................................... TCACAGGACAAACTTCTGAATTCGGATGGCAGCCTG 81245 37 100.0 35 ..................................... CCTCTAAGAAGTTTGAAGTAATGGAGTATAGAGTC 81173 37 100.0 35 ..................................... CATTGAGTACAACCCATTGCCCATTCACGGGGGAT 81101 37 100.0 37 ..................................... AATGGGAGTTGAATTTTAATGAATATTGAAAAGAGTT 81027 37 100.0 35 ..................................... TTAGGAATTTGCCACTGACGGACTTTCACCGGAGG 80955 37 100.0 33 ..................................... TTTTTCCTGTCATGTTTATCAATCCCTAAAAAT 80885 37 100.0 45 ..................................... TTCTCTCGATGGTCCCCTTGTAAAACATGTAGGATACACGGATTC 80803 37 100.0 36 ..................................... AATAAAAAAGGGAAAATCCTTCTCGAAAACACCGGA 80730 37 100.0 35 ..................................... TTAATTATTCAAAACTATTCAAATTTGATATAATA 80658 37 100.0 34 ..................................... ATTTTTTGTATCGGTATATCAGGACGGGGGATTA 80587 37 100.0 34 ..................................... ATCCTCATCATTTCCATCACTGGAAAAGAGTTAG 80516 37 100.0 33 ..................................... AATTACAATCAACCGGCAGGAAATTATCATCAT 80446 37 100.0 37 ..................................... CCTAGTGGTGCGGCTTCTTCCTCTTATTCTTCGGGGG 80372 37 100.0 37 ..................................... AACAAACTCCATCTGTATACATCACTAATCACCAATT 80298 37 100.0 35 ..................................... GACATAGGGGTGACTATGTATGGACTTAACGGATA 80226 37 100.0 37 ..................................... AAAGAATAAACGGGGGATTATAAATGGAATGTATATA 80152 37 100.0 35 ..................................... ATGCTGGTGTGTCCCTGCTGCTACAGTACCGAATT 80080 37 100.0 37 ..................................... GGACCTGTTTGGCTCCTATCATGTACTTCCCGAGAAG 80006 37 100.0 35 ..................................... TGTTCAGATCAATTCTTGCAAAATCAATTGCTTGT 79934 37 100.0 39 ..................................... TACATTGAAAAGAACCCACTTCTCCAACCGTACACCGTG 79858 37 100.0 34 ..................................... TAGTGATGTTTGCAATCTCTGTAAACATTTCAAC 79787 37 100.0 34 ..................................... TTGGTCGAGGGTTTTGCAGTCACTCCACCATACA 79716 37 100.0 38 ..................................... TTCGGACCAAAACGCTTGACTCGTACGGCGTTCTCATT 79641 37 100.0 37 ..................................... CGGCTCGATGAAATGGAGTGCAGACGACACATACGCA 79567 37 100.0 38 ..................................... AACAACATGGTACGCAAAACCGCCAACACGCTTAAAAA 79492 37 100.0 38 ..................................... TCAAGAAGCAGTATAACGGGCGAATCTATACTATGATC 79417 37 100.0 36 ..................................... CACCTGTAAAACCATCTTAAATGAACATAGACCAGT 79344 37 100.0 39 ..................................... TGACAATAACCACGAAGGGAACCCCGTTCGATGAAGACG 79268 37 100.0 38 ..................................... TCTAGGGTTATGAAGCCTTCGCCTTCAAAATCGCCATA 79193 37 100.0 38 ..................................... ATTGCTAAGAGCCAAGACAAAAACATACAAAATTGAAT 79118 37 100.0 34 ..................................... TAAGACCCTAAGGTTTTACCAAGCCTTCTATAAA 79047 37 100.0 34 ..................................... CTGAATTTGATGGGGTAGGCGGCAGTTCAATCTC 78976 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 67 37 100.0 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CTGGAATCGTTATTTCTATTGAAGCACACATAGTTACAGATATAATATACACTAAAGCAAAAAGAAAATCCACTAAAATAAAAAAGAAACTAAAAAATATTCGCACCACCAAATCATAAATTTCTACATTTTATTTTCTACATTTTATTTTCTACATTTTATTTTCTACATTCTATTTTTTAGATTATATTTTTTAGTCAGTTTTTATAGAATGCCATGTCAGGCGGTTGTCGATGGGATATAATGTTTACTCTTTTACTCTTTTTTATTCTTATAGTAGGGCTTTGCGTTAGGTTGATCATTGATTGTTAACATGAGCCGATAATTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTCCAGATGTTTCCAAACCATCAAAAACCCTGATTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAATGGGCTCATTTCAAGCCTTTTCTGGCCAAACGCCGGAAATTTTTGCCCT # Right flank : TTCGGTGGAAACTGGATAAAAAACATTCATTCTTTGTCGAGAAGTAGCTCCAACTAATACAAGAACCAAGTTTCCACCCAAACTCACCAAAACCAAAAACCTAAAATAACCCCAGAAGTTATTCTCTAACAGGGAGAATAGCCATGACCAGCGAAACCGAAACTCCGGAATGTTGCCCTCCGTTTGATCCCGCCCCCTGGGATGGAAAAGTCTTTGATTGGAACAATAAAAGGTTCATCAGGGATTCCGTTACCACACAGAATTACATGCCCCTGAACTTCGGGGAAGTAATAATGAGGATGAACGAGAAAGTTGCCAGGGCTGGTGCGGAAATGCCTGACTGGCTCTGCCTGTCGGACCATACCTCTGAAAGCAATATGGACCTCTATCTGGCTGTTGACAGAGAGGTCGATGGGGCTGAAAATGTGACCCTGAGCGGGAAGTTTTTGAGCAAAGTGTATGAAGGGAATTTCGAAAAAACAGGAGAATGGTGCGGGGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 169147-166979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJOY01000030.1 Methanosarcina sp. 2.H.T.1A.6 scaffold6_1_size370918-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 169146 30 100.0 40 .............................. TGTTTATATAGGGCCCGGCAATTGAGGATGTATCAGAAGA 169076 30 100.0 39 .............................. TCCGACAGAGCAGGGAGGGTGACAGAAAATTCAATACTG 169007 30 100.0 37 .............................. ACGTCTACTCCTACAGTGGTATCTTCAGTGAAAGGTT 168940 30 100.0 35 .............................. ATGATATAGTCAAAATAGAGAAGATCACAAAAACT 168875 30 100.0 36 .............................. GACGCATTAGACAATATTACGTCATTGATCCTTGAT 168809 30 100.0 37 .............................. ATGTTGTATATTCATTCAGTAATGTATATGCGGATTT 168742 30 100.0 36 .............................. GTTGTAAAACTTGTAAGCGCTTACTTACAAGTTTCA 168676 30 100.0 36 .............................. AACCTAATTCTTTGATACAGTTCAAAATCAAATTTA 168610 30 100.0 37 .............................. AGCCTCTTTGTAGCTCTCGATTTTGTATCCAAATCAG 168543 30 100.0 37 .............................. AAGCCTACTCGGTATAGTCAGTTAATCGCTATTCAGT 168476 30 100.0 35 .............................. ATAACCACGACACGTCTACATATGACGAGAGCATC 168411 30 96.7 40 ...........................T.. TTTTTTATAGAGTGATTCATCTATCTATGCGCTCCATCTC 168341 30 100.0 35 .............................. ACAGGCACAGACATTGACCCATTCAGACCAGATTG 168276 30 100.0 37 .............................. ATTGACGTGGAAGAAAAAAGAGACGACGAAGAAGATG 168209 30 100.0 36 .............................. TTCCTCTACCCCATGCCTATACGCTTCATATGCTGC 168143 30 100.0 37 .............................. ATTAAAGACCCCTCGCTCTATTAAAAAACGGTTAATC 168076 30 100.0 38 .............................. ATTTCCATTATAGAAGTTATCAATAGCTTTTATCCCTT 168008 30 100.0 37 .............................. AAAGCAGCTTTAGATGCAATCAAAAACGCCATTCCAG 167941 30 100.0 35 .............................. GAGCCTGATTTCTGCCTGCGTTGGTTGCGCCTCTG 167876 30 100.0 40 .............................. TTATGTGCCAATCTTCCCCGGACACTTTTTCCATATCTGA 167806 30 100.0 34 .............................. CTCCTAAAAAGCATGTTGAATTGAACCTTAAAAA 167742 30 100.0 35 .............................. GAGCTATGCAATACAGTACCCTACCTACCAAATCC 167677 30 100.0 40 .............................. GGGCTCCTATTTCGTCAACTGCAAAAAGAAGCGGAATATT 167607 30 100.0 38 .............................. GTAGAATCCAACCATATTGATCTTAATCCTGTATTCGC 167539 30 100.0 38 .............................. ACCTTCTTTATCAGCACATAACCAAGAACGGCTATAGC 167471 30 100.0 36 .............................. AGATTGATCAGAGCATAAGTGTCCTCGCCGTTGGAT 167405 30 100.0 36 .............................. GGATATCTGCAAGCTCTTCGTTAAGGTCAGCAGAGC 167339 30 100.0 36 .............................. AATTGAGACACATGGAGGAATCAAAATAGAAGAATA 167273 30 100.0 37 .............................. CTGATAGCTCCGTATAAGGTGGAGAGGGAGGGGGTTT 167206 30 100.0 36 .............................. ATTCGTTTAAATATTCCGAGAGGTTGCAGGCAGAGG 167140 30 100.0 37 .............................. ATTTAATATTGAATAATAAAATGGGGTCCGTTATAGC 167073 30 90.0 36 A.........T..........A........ CTATTCCGAAATGTTTATTATGTCCCTATAAAATTT 167007 29 80.0 0 ...........CT........TC..-..T. | ========== ====== ====== ====== ============================== ======================================== ================== 33 30 99.0 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : CTGAACTGGGTTCAAAATAGTGTTTTTGAAGGTGAACTTACAAAAGCCGAATTCCTGAAAATTAAGTCAAGGCTTAAGGAACTAATTGAAGAAAGCCATGATCACATTATCTTCTACAGTTCCAGAGATAAAAAATACCTTGGAATAGAAAATCTCGGAACTCCAAAAGCAGATACAAGCAACATAATTTGATCTGCCACATCTGTGTATTTCACTACTTAAGCTTTCACGCAAGATCCAACACTTTATTTATATATTTATTATAACTCCACTGTCTGTAGATTCGGGTTCTTTTCTTTTTTCGTGGATCTTTATAAATGAAACGCCAGAAGAACGATCCCCGAGAATTCCTCTTGAATCTCCATTAAGAAAAGAATACTTTTATATTGTACAGCACCAAATACAATTGCCTAAAAACAGCATCATAAACCCGAATTATTCAGCTACCATTTGAAAGGATCCTGCATCTAATTTGCCTAAATTCGGGGAAAATTTCCTTG # Right flank : CTTCAATTCACATTTAATCTTTTCTATTTAATGAAAAAGAAAAGTTACTTATTTGAATACCTTTCTCTATTTTGAAATATTATTATTTTGTGAAAGTGAAGATTTCTGGAAATGGAAGTAACAATAATGAGCCAGGGTTTTCTTTATACGTTTACTGGGAATCCTTTTGTGGATGCTGGTATATGGGCTATATGCGAGTGGTCGGGTAGAAAAAAGCCTGAAGAAATTACAGTGGAGGATCTCAGAGAAATTAAACAAGATGTGATCTCTGTATATTTAAGTCCGGAATGGGCAAAGAGCCTTTATTCTGTTTTTCCGAATAACGCGGTTACTAATCCCTCTGTGAAAAATAAGGATAAACGATTACTTGAATTTTTAGAGCAGCTAATTGGTCAGGTTGAATCTCAGGGAGGGTTAGGAGAGTTCGGTAACTGCATCTCTTGTGGGAGATATGATGTTGAGGACGTTAGGACAAAAACAGAAATTCCCCTCATAGGTTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //