Array 1 541499-540806 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCJ01000002.1 Chlorogloeopsis fritschii PCC 6912 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 541498 36 100.0 35 .................................... TTTAATTCAGATAGCTATGAAACAAAACTAAAACG 541427 36 100.0 38 .................................... GTAAACTCCGCTTTCATTAGGAGTACTGTTATTTGACC 541353 36 100.0 38 .................................... TAAAAAAGTGCATCTACTTAAAACAGTCTCATTATACT 541279 36 100.0 34 .................................... GTGCGGGATCTTCTTCTTTCATCGGCGTTAAAAA 541209 36 100.0 36 .................................... TTTGATAAGCCGAGAGGAGTCTTTTTGATACTAGTG 541137 36 100.0 42 .................................... CTCCGTTGTTTGCACTGTTTCAACTGAAACGCTACCAGCAAA 541059 36 100.0 37 .................................... TTGGCACGGCTATATTCCCCAGCAAGCACTTAACAAT 540986 36 100.0 39 .................................... AGGGGAGTGCACCATCTTTGGTGCTAGAGGGGTAATAAT 540911 36 100.0 34 .................................... AGGAGGTATCATAGGGGATATCATCGCCCACGTT 540841 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 100.0 37 GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Left flank : TTCCAGAACCCATTGCTGAAAAAAACTATAGTGGTAAATTTCAAGTTCGTATTCCTCCAGAGCTTCATCGTAAGCTAGCCATGGAAGCAGCAGAGGAAAAAGTTAGCTTAAATCGTTATGTAAGCCAAAAACTAGCTTGTTAATTTTTCTGTGATAAGTAGGTAGACATCATTAAATATAAAACTTGAATGTAGGTTGGGTTGACGCTGCTGTTACCCAACATTGATAAAGTTTGATGGGTAACGCTCACGCTCTACCCATCCTACAAATAATTATGACGATCTACTTAAAACACTGTCAGACTACACTTTTCTACGGTCTGCCAGTGTTTTATTTTGTGTACTCTGGTAACTCTTTGGTCAAGTGCTTTTACGAAGTGCAGGGTACTTCATTGTTTGAGTTACCTGCGCTAACGGAAAATTTTGATGAGTATGAAAAGTTCTTGTTAGCTGCAATGAATCCGACATCACGCGGCATCGGGTAAAGAGGGTGGGAGACTT # Right flank : AGTTACCTTCTGGAAACCTTATATAGCAAGTTTTTCAAACCCCCATTTCGACACCACTTTTTTATTTAACTAAAAAATATTAAGAAGTGGCGCGTTTTGCCGACTGAAACCAGGACTGTGCAAGCAATCGACACCAGTCAACGAAGTTATGAGGTTTTCAAGGTTCTGGCGAGTGGTGTCGATTTAGTTTCGACACAGTTAAGTAAAACAGTAAAATCTAGTACTAAAACCTGTCAAGTTCTTTATAAATAAGTTAATAGTTGTGGGTTGTGGCGTAGATGAGGGGAAATGGATGAAATGGCATTTGGCGATCGCGCTTTAGTTTCCATCACAGCCAATTTAAATAATCCAACTATTCCGTAAACACTTTGCAGTAGAATTAGTGCTTTAGAGAGAGGAGGGCAAAAAGTGACTCGCGTAATCATTGTGCGCCATGCTCAAAGCACCTATAACACCGAAAAGCGCATCCAAGGGCGCACTGATACGTCCACATTAACTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 460363-457988 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCJ01000001.1 Chlorogloeopsis fritschii PCC 6912 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 460362 37 100.0 36 ..................................... AATTTCATACTGAAGATAAAGCTCTTACAGCAGTTC 460289 37 100.0 35 ..................................... GGATATTTGAATGACATCACCAGGGGAGACAAAAG 460217 37 100.0 36 ..................................... TTTCTTTGTTGCACTACGGGCTAGCAGGCTGCCATC 460144 37 100.0 41 ..................................... CCTTTGGGAATGCCCGTAAGCTCCGAGGCTTGCGGTGTCGT 460066 37 100.0 34 ..................................... ATCACCCCGCTCAACCCTGGCACGTGGGAGAGCG 459995 37 100.0 36 ..................................... AGATTTTAGGCATTTTAGGTGAGGAGGAGCAATAAA 459922 37 100.0 36 ..................................... CCAAGATGGATTGTAAATAGGAGTGGTGACTGGGGA 459849 37 100.0 34 ..................................... TCAAAAGAGAAATTTGACCAGCGCTGAGTAATGA 459778 37 100.0 38 ..................................... TTGAAGGCTCATCTTCCAGCAGAAGAAAAACACCCCTA 459703 37 100.0 35 ..................................... TGTCAACCTCCAAATCTGACCAGCTTTATAAAGAG 459631 37 100.0 35 ..................................... ATATTTAAAATTACACACCAAATCAATGAAATAGA 459559 37 100.0 44 ..................................... AGAAAATGGTGCGCCTACAAATTTACTCTTGGATTGTGGTGGAT 459478 37 100.0 34 ..................................... GGGGATCTCAACATCACACTAGTGCGTCCTTTAC 459407 37 100.0 35 ..................................... GGGAAGCCCTGGTAATAGAATTTTTAAGCCAGCGC 459335 37 100.0 38 ..................................... TGTTGCCCGTGCTGGAAGCGGCATTTTAGAAGCGGTAG 459260 37 100.0 39 ..................................... CAGTGAGAGATTTATGAGTTTTGAGTTGGATGATGGCGA 459184 37 100.0 42 ..................................... GCTATATGGCTGTACCAAATGGGAGAGGAAAAACAGAATCAG 459105 37 100.0 36 ..................................... GCTTCATTAATAATTCTTTGCTCATCTACTGGTTTC 459032 37 100.0 33 ..................................... CCGCAAGAATGGCACTTATGGGTACGAGTGGAC 458962 37 100.0 34 ..................................... TTAACAGCAAAATCTTTCCTCTGTCTACTTACCT 458891 37 100.0 37 ..................................... CCTGCTCGCTGCGCGTCATTATTGCATGGTCTGGGTG 458817 37 100.0 32 ..................................... AGGGGCGATCGCTCTATCTCTTGCCGGAGTTG 458748 37 100.0 38 ..................................... CTATAGGGAATACTAGCAAGACTTCATCTGTGTAGCTT 458673 37 100.0 34 ..................................... GGGAAGAGTGGGAAGAGATCTATCCTGAGAAATG 458602 37 100.0 34 ..................................... CTTAAACAAGCTGAGATATTTTTTGCTAGGGGTT 458531 37 100.0 35 ..................................... AACTCTCTCAAAATAGCGCGATCGCTCTTGCAGAG 458459 37 100.0 34 ..................................... TGTTGGAGTTTTAATTTTGCCTGGGCGATCGCCG 458388 37 100.0 34 ..................................... GAAGGAGCGATCGCTCCTAAACATTCAAAATCAC 458317 37 100.0 35 ..................................... ATCGGGGGTGATCGTAGGGTGATCGTGGGGTGAAG 458245 37 100.0 37 ..................................... GAGATACGGACGTTTCTATTGGCGAGAATAGTAGGAA 458171 37 100.0 35 ..................................... AAAACTCATCAACCAAGCGACAGTACCCTCCGGCA 458099 37 100.0 38 ..................................... ATCAATGTTTTTGACTTCTATTACTTGTGACTCTGTAA 458024 37 94.6 0 ................................A...A | ========== ====== ====== ====== ===================================== ============================================ ================== 33 37 99.8 36 GTTGAAATTCTAATTACTCCCTATTAGGGATTGAAAC # Left flank : GGCGGCACTTTTGTTAGGATTGCAACCAGTAATGGCTATATCTTCTGGTGCTGCTTGCTCCTCGGCAACTACTGCACCATCCCATGTCCTCACAGCACTAGGACATTCAGAAAAGTTAGCTTATGCGTCAATACGGTTTGGGATTGGAAGATTTAATACTGCTGAGGAAATTGATCGCGTTGCCCAACATACCATTGCTACAATTGGGAGTTTACGGAAGCAGGCAATGATGGTTTAACATTGTCAGGCGATCGCACCATTTTCTTTTTTAAATGCGCGGATGGGTAGGTGTTGGAAAATCAGTTCACAAAAAAAGGGCTAGATTTCTTTGACTGCAAGGAGAAAAGAGCGATCGCACTTCTGAGCCATCCGCGCTCCTTGTCCAGACTGGGTTTGGGCTATTTTCACTCTACTCAATCCAAATTTTTCATGCTATGATTGCCTCATCCGCGCAAACGAACCTTGAAAACTTAATACTGATTGGCTTTTGGGTTGCCGCT # Right flank : CTAATCACATCCAAGCAAAGAATTTTACAAATTAATTTAGGCGATCGCTTGAGGACAAATATTGAGGATATCAGCTAGCTAAAAAATTACTTAAGTTTGTGCCAACTTTTCAATTAATAACAGCAAATGTTTCTCCAATTTGTCTAAAGCTTCCTGTGCTGAAGTTTTGTCAATATCGTGGATCAACCAATATTCCACAGCATCTAACCATTTAGGAAAACGCTCTAGAATCAGAGGTTGATGTTCCAATTCATCTAGGGCAATTATCAAATCCACAGTTTGAAAATCTTCTTCTAGAGCCTGCAAGGGCAAACGCTCGCCTTCTGGTAAAGTTACTCCCCGCTCTTTTAAAGCTTCAATTGTGTATTGAGAAATTGCCCCTATATTGTTTACACCCCTCTCCAGTGCTAAAGCGCGTGAAACAGCTTGCCATTTTAACCCCTGCTTGAGAGCCAAACAATTAAACAGATGTTCGGCGAAGCGACTGCGGTAATAATTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCTAATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 474492-476354 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCJ01000001.1 Chlorogloeopsis fritschii PCC 6912 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 474492 37 100.0 36 ..................................... AAAAAACAGATTCTGCACCTGATCTTGTAACCTGAT 474565 37 100.0 34 ..................................... TTTAGAGTCAAATTGACGAATTCCAGCACTTCGA 474636 37 100.0 36 ..................................... ACGTACCCCGCTCTAAAGAGACGCGGTTTCCAAGCT 474709 37 100.0 37 ..................................... AAAAAATGCCGCCGATTCCTCCTGAAACTATCGAAAA 474783 37 100.0 34 ..................................... ATCACCGAAGGGGCGAAAAAAGCCGGTGCTGGGC 474854 37 100.0 37 ..................................... CATCGGCAAACCCTCCTTCCATTGCTTCCTTCGCAGA 474928 37 100.0 34 ..................................... CTAAAAACAGAGTGAAAGCGAGAAATCGCTTGAG 474999 37 100.0 37 ..................................... TTTACAGGGACGCTTGCAATACAGCAATTCATAATTA 475073 37 100.0 38 ..................................... TTACCAAACCGAACATTTAAGCCCTTGGAATTCATTGT 475148 37 100.0 36 ..................................... GGGGCGGAAGCTGTGGACGGAAGCAGGGCTAGAACA 475221 37 100.0 37 ..................................... GTGGGATTAACCCCGATATTTCTCGTGTACGCTCGTG 475295 37 100.0 39 ..................................... AAGCTTAACTAGTTTATTTAATAAAGAACTAACAGCATT 475371 37 100.0 37 ..................................... GTAATGACTGGCACCATTGGCTTGATAGGGATAATCA 475445 37 100.0 36 ..................................... AGAGATTTATCAAGGTTTGAATCAGGAGCAGCGTAA 475518 37 100.0 35 ..................................... TCCATTCTTTAGGCATTATATGAACTCCATAAAGT 475590 37 100.0 34 ..................................... TAGCCACTAGCAACAGCCCGCATTTCTTTAACTT 475661 37 100.0 35 ..................................... ACGTCTACAACCAATTCCGCATTTGGATTTCTAAC 475733 37 100.0 34 ..................................... TTCTTCTCTCCAGTATCCTTGATATACAGCTTCC 475804 37 100.0 37 ..................................... ATACTTTGACACAATTTTTGTCAATAACGACATATTG 475878 37 100.0 42 ..................................... AGAAACCCTTATCAGCACCTGGAAAGACTTGCTGATACAGGA 475957 37 100.0 33 ..................................... ATCCCAAAGCTTTAGATATAGTTCACCGCAATG 476027 37 100.0 34 ..................................... TTTCTCCATCAGAGAAACAGTGCCAGTACTTTTG 476098 37 100.0 38 ..................................... CGGCTCAACCGATTTACTTGAATCGATGCTTGAGGAAG 476173 37 100.0 38 ..................................... TGGCATTTATGGCAGTTTTAGAAGGAATGCAAGCAAAA 476248 37 100.0 33 ..................................... CAGCAATCCTCCTGAATTTGCATATTCTTCCCT 476318 37 94.6 0 .........T........................G.. | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.8 36 GTTGAAATTCTTCTTACTCCCTATTAGGGATTGAAAC # Left flank : GAGTCGCTGTTATACAAATATCACGTTAAGAGGGCAATTTGTCGCCTTAACTACTTTTGAGGAGGGACGTTTGAAGAGGACAAGGCGCACCTGGTGCAAGGGGACAAGGGGAGGACACTTGCGTGCGGAGGTTCCCCGGAGCTTTCGGAGTCTCCGGCTCCGCTCCGTTGAGCAAAGTGTCCGTCGACAAGGAGACAAGGAGAGTAATAAACCAACTACTGTACGGGTAACAAATGACCAATGACTATTTACTTTTCTTTACTCTTTACTGAATGCGCGGATGGGTAGGTGTTGGAAAACCAGTTTAGGAAAAAATGGCTGGATTCCTTGTCATGTAAGGAGAAAAGAGCGATCGCACTTCTCAACCATCCGCGCTCTTTACTCAGACTGGGTTTGAGCGATTTTTACCCTACTCAATCCAAATTTTTCATGCTATGATTCCCTCATCCGCGCAAATAAACCTTGAAAATCTAATATTGATTGACTTTTGGGCTGCCGCG # Right flank : CTAAATCGGATGTGTCATGATTAGTTAGACCTTTATGGTTGAGGAGGGTTCGCACTACTTTGGACGGTGGGCGATCGCTCTTTTTGATAAAAAGCGTTGTGCCGTAAACACAACACTTGATCAAAGTTTTGATTTTTGTTGAATTTATATTGTTATTGCTGCTGATTTATTCGCTTTTGCAATTCAGCATCAAACTCCTCATCTGTACTGCAAAGCACGCCAGGACGAGAGCGAATTATACTTAAGTAGTGCTGGAATGCATTCTCATCATTAGGATTGCGCCGCACATATTCGCGCAATTCTTTTTCCGTCATTGATTCGTAATTTTGTCTAGTCATTCGATTATCACCTTCCCGTTTGGAAGCATTTCTATTTGTATTGTCTCTCCCACTAACATCACTATTCGGTTGGTGCGGCTATCAAACCGTACCAAGTTAATTGGTAGAAGTAGATTACTTACTCTCACGCTTCTTTGATAGAAGGATTTCAGTTGCTCCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCTTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 38447-39573 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCJ01000048.1 Chlorogloeopsis fritschii PCC 6912 sequence48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 38447 37 94.6 34 ....T....T........................... GAGAATGGTTCGCCTCTATCCACCACTCTTGGGT 38518 37 100.0 35 ..................................... CCATCAATGGCGGTGCTTCCACTGGAGATACAAAA 38590 37 100.0 42 ..................................... TCAATTGGCTGGCAGTGCCGATAGCAGCTATCCAATTCAGTT 38669 37 100.0 36 ..................................... CTCAAAAATGAGGTGATGAATTTCGCTGCTTCACTT 38742 37 100.0 37 ..................................... TGAAGCGAAAGGCTTGATTAAATTTCACCCAGTACCC 38816 37 100.0 34 ..................................... GTTCGTTTCTTACTGTTGCAGTGCTTTTAGTTTT 38887 37 100.0 35 ..................................... ATCGCTACCAAGGCTGACGGTAAAGCTGATAAAGC 38959 37 100.0 39 ..................................... TTTTTACCTTCAACGAAGCGCTTGGCGCTTACATCTTGC 39035 37 100.0 35 ..................................... GTTCCCCAAAGCGCCCGATGCTCAATTAAATCCGC 39107 37 100.0 36 ..................................... TATGGTACCAACGCTGACTTAATATTTATAGATCGG 39180 37 100.0 30 ..................................... TTCTTCAAAAGCTTGCCAGCCTATCATTGT 39247 37 100.0 35 ..................................... GTTCGCCTTCATCAAGGCTCGCAACTGCGCTCGTA 39319 37 100.0 35 ..................................... GGTATTGCAGCTACTACTATGGCAGTTGGAACTAT 39391 37 100.0 35 ..................................... ATAAAACGATGTCCGATAACTGGTACGTTTGGGAT 39463 37 100.0 37 ..................................... CTTACAGGCTATTATGCGATATACCTGGATGCCAAAG 39537 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 99.7 36 GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Left flank : TTGGATTGCCAATAAATTGCAAACTATCCAAACCACGCAAGTCTACAATCCAATATTCTGGAATGTTAAGAAAAGCGTATTCTTCCACCTTTCTTGCGTAATCATCTTGCCAATTTGTACTCACAACTTCAGCAACAAGCTTGATTGTACTGCCGTTACATATAATAGGTTCTTTTTGCCAGAGTGGTTCTTTACTAAGTTCTGCTTGATCTAAAACAATGACATCAGGGCGCAACGCTGTGGCTTCCGCAGCCGGCGGTTTGAGCAGGCAAGTTTTTGGAATTAGCCAATTGAAATTAGAACTAAAAATTTCGACATAGATTCTACCTGCAATACTACCAGCTACAGCTTCATGAGGGCCTGTAGGTTCCATGTCTCTGAGTTCTCCGTCAATTAGTTCATAACGTGTATTGTCACCATATTGGGCAATAAATTCTTGGAAAGTTAGTATTTTGGGTGGAGTGTAAGTCATGTGTATTTGAGTGTAGGAAATAGAATGT # Right flank : CAGCGGTAGCCCGAAAGTCAATCAATATTAGGTTTTCAAGGTTCATTTGCGCGGATGGAGAAATCATAGCATAAGAATTTTGGATTGAGTAGGGTGTAAATGGCTGAAACCTAGTCTAGGCAAGGAGCGCGGATGGCTGGTCAGTAAATATTCCTCTAAAACTTTGTGCAGTAAGAAATTCAGCTATTTTTCCCTGAACTGATTTTTCAACACCTACCCATCCGCGCATTCAGCAAAGAAAATACTATCATCGCGGGGTTGTTCACCACCGATACGTTCAACCTTACCAAAACAGCAGGCGCACATAAAGTAAAAGCGAATACTATCAGTATCAGGTTTAATTAACTTGTTGAGGCGCGATCGCAATTTTGCATATTGAGTATCGGTAAGCTGGCACTCAAAGACGCTATACTGCACCCACTGCCCATACGACTTGAGAACTTTGTGGATTTTTGTACGGCGCTTGTCTTCTGAAATATCATAAGACACAACAACATTCA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 24357-24152 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCJ01000050.1 Chlorogloeopsis fritschii PCC 6912 sequence50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 24356 37 97.3 47 ..A.................................. CTGCGGAAAATACCTTTAGGAGTGCGCGATTTACTGAAATGAGAAAG 24272 37 100.0 47 ..................................... TTGCGGAAAACACCAAAATGAGAAAGCGATCGGGCATTTTGAGAACT 24188 37 94.6 0 ......A..A........................... | ========== ====== ====== ====== ===================================== =============================================== ================== 3 37 97.3 48 CATTTAGGCTTTTTGAGTAAGCAATATGCCTTTTTGC # Left flank : ATATCGAGTCGCAACTCCCAACAGCATATGCTCTGCCATATCTGCCAACTCGCGCTCTGTTTGGAGCATTTCACGGTATAACTTATCCAAGTTGGAAAGGGCAGTATTGTAGGTATTTTCTTGAGTTCGCATCTTCTCAATAAGAGTTGAGAAGGTAGATAAGGTAAGTCCATTGCCTACATTTAAATTCGGATCAATTGAGTTCATGCTAGCCGCACGACGCACTGCTCTTTCTAAAATTTTAGAGCTTCTTTTTTGACGAGCCATAATCTACACCTTCTTCTCAATTACGGGTAATAATATTTACTTTAATAATTTCCCGTATTGATTGCCTTGAGAGTATTTCGGCAAATCTGCAATAGCTTTTGCTACAAAGCGATCGCGATCGTGAGTGCAAGAATTACTGATATGAGTTAGCAAATAAGTAAATTAAGAATGTAATTTGCCGTTTGCTTGCGGAAAACACTAAAATGAGTGCGCGATCTACCGAAATGAGAAGG # Right flank : TTATTGAATCGACTTGATCTATTTTTTCGATACTGTTGGATTTAAATACAACCCCTATCTATTCGTCAATTAACCATCCGCGCTGTATACCATGTTCAATCCCGCCAGTCCAATCCATTATTAAATGGTTTCGCACCTTTTTAAAGAGGTGTTGCACAACAATCGGGTTAATTGGATTTTTGACATAGGTTAATTCGTATCTAAACTCTCGGTCAGTATTTTTCTGCTGACGTAGTACATAAATTTGGTCAACCTTATATTTTCGTAAATTTACATCACTGGTTAGCTTAACCCACTCCATGACCACAAGATACAAACTATTAGGATTTCTTGCCTTTAAATCTTCTGCTGCGCGTGAAGAACCTTCAAGCATAGTTTTGTCAAGGTACGTCTTACACTCGATTGCAACAACTGGTATGTCAAAAATGTGTGTCTCGGTGTTACCTGTAACTGTCACCTCAGAATATGTACTTGGCTCTTCTTTTAGAAGAGGAAGTATC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTTAGGCTTTTTGAGTAAGCAATATGCCTTTTTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 215668-218696 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCJ01000007.1 Chlorogloeopsis fritschii PCC 6912 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 215668 36 100.0 36 .................................... CTCAAAGCCATACTCTGAGTGGGTAGAGACACAATT 215740 36 100.0 35 .................................... GGCCTTTAAGCACTTCTACCTCTTCGCCGAAAATA 215811 36 100.0 42 .................................... GGTAGGAGCGGATGTGGCGCGTCTGCCGTGTGCTCGTCTTGA 215889 36 100.0 35 .................................... GAGCACCGCATAGCCGCCTGCCTCAAGCCCGGCGA 215960 36 100.0 43 .................................... CCGACGCGGCCAAGGCCGGCGCCGCCGCCAAGGCCTGCAAGAT 216039 36 100.0 36 .................................... TTCAGAGTTAATGATTTTTCTGTCTAATGTGATGAA 216111 36 100.0 34 .................................... GTTGAACAATTTCATGAGCTTTGCGATCGCTTCT 216181 36 100.0 37 .................................... CTCTAAGAGCAAAGGCAACTTCTTCAATAAATTGAAA 216254 36 100.0 36 .................................... ACTTAAAATATGCAGTAAACAATGAATCAAATCAGG 216326 36 100.0 39 .................................... ATACTGAGCATTGACAGTAGAAGGTAATTCAGTTGAATT 216401 36 100.0 36 .................................... TCATAAGGCTTTGTTGTCTGCATATTTTTTATTACT 216473 36 100.0 38 .................................... AGAAAATAATTTTTCTACTTCCCAATAACTTAAAGTAT 216547 36 100.0 37 .................................... ACCCAGAATACGACCATTACTGGCTTGTGTGTAACGG 216620 36 100.0 36 .................................... CTTGATACGTGCGCGGGGAGTTGTTAAGACTTTGCG 216692 36 100.0 40 .................................... GTTGGAGGATAGACAATGAATAAGCCAGGGCTAAGGGGTC 216768 36 100.0 39 .................................... CTCCCAGACAGGAGGCATGAACAGTGGGGTTTTCTTGCC 216843 36 100.0 34 .................................... AATGGGGAACCCATACTATGGGAACTAGAGCAGA 216913 36 100.0 39 .................................... TCTCTTAGAGCCTATCCGAAAACCCAATGTATGAGGAGG 216988 36 100.0 31 .................................... TTATTACTAGCTGCGTCCACCTCAAAAACAT 217055 36 100.0 36 .................................... CCAAAACAGTATTCATCTTCTGCACCACAGAACCAC 217127 36 100.0 36 .................................... GGAGAAGATGACCGCCTTGAGGATCTAGTGGAGTGT 217199 36 100.0 36 .................................... GTTTTTAGTGCCGCGCCCGCGTAAGATTGATCCGGA 217271 36 100.0 38 .................................... GTTGGTCAAAAGACTTTAGTTTAGTTCCTGTTTTTACA 217345 36 100.0 38 .................................... ATCAATTAATTCCTCTTCGTCTACCGCATCACGAGGAG 217419 36 100.0 36 .................................... TAGGATCCGCTGAGATTGAGAGGATGGTTGATGTTG 217491 36 100.0 36 .................................... GTGTTGTATGACTTCCAAATCGTACAACATCTAATA 217563 36 100.0 37 .................................... CTTAGAGAAATCTTTCTCCAGAATCTGAAACTTAATC 217636 36 100.0 41 .................................... AACAAGTGGGCATCTTGTTCATTACCTGGAGTTTTCATCAA 217713 36 100.0 39 .................................... GTGATAAATTCAGAGGAGCTTTTAGGATCAACCCACCTC 217788 36 100.0 35 .................................... TCAGCAGCTTCAGGAGAATAGCCAGAAAGACCTAA 217859 36 100.0 37 .................................... TCTATACCAGCTAAATAATAAGCTGACTCTAGAAACT 217932 36 100.0 39 .................................... TCGTGTTCGCTTGCAGATGCTTGTGCGTGTCTGAAAATT 218007 36 100.0 36 .................................... TTAACTATTTCATTGAAAGTTTTTAATTCTTCTTTG 218079 36 100.0 41 .................................... TTACTGGTGCAGACAACCCCTCAATTGCGTTTTGTGCTGTA 218156 36 100.0 37 .................................... TTCAATGAATGAGATTAATTACATGGATGAGTATGAG 218229 36 100.0 36 .................................... TTTGGATTAGCTTGAGCAGGTGCAATAGTAACCAAG 218301 36 100.0 40 .................................... ACATCTTTTGCTTACGGATCTTTTTGTCCGTTTTTCTGGT 218377 36 100.0 34 .................................... TTAGTTTCTATCTCTCTTATAAACTGTTCTCTTT 218447 36 97.2 35 ...................................T TCAATTGGGCGATCGCCAAATTTGAATAGCCATTT 218518 36 97.2 35 ...................................T ATTCAGACAAGTTACCGATAAATGTAATGCTGGTT 218589 36 97.2 36 ......................T............. TTGAATGATATGAATCAAGACCTTCTCTTAAATCTT 218661 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== =========================================== ================== 42 36 99.7 37 GTCTCTACTCGCTAGAGAAAATAATTGATTGGAAAC # Left flank : CACAGGTTTATCAGCCTTATCTGATTCGCTAATTTTATGCTTTTGTATGTGGTAGCTTATGATATTCCTTGCGATAAGCGGCGTAAAAAAGTCTCAGATTTGTTGGAAGGCTACGGAATTCGAGTACAGTACAGTGTTTTTGAATGTGTGTTGACAACTTCACAATATAATGAGTTACATCAGCGATTGCGGAAGAAAGTAAAGTTATCGGAGGATAAAATACGTTTTTATCCTTTGTCGGCTCACACTTTAAATCAAATTCAAGTTTGGGGTGGGCCTCCAGTGACAGAAATGCCTGGTTCAACTATTATTTAGCTGTTGCTGCGGCCGATCGCAAAAATGGCTGAAATAACGCAAATTCGTAGAATCGGCCGTTGGCTTGTCCCGTAAGGGTTTCATTCGTTTTTTGTTCTGATTTATTGGCAGTTATGGGTAGAAAAATCGGATCGGTCGCAAAGCGTCTCTGGACTCCTTACCGGGTAAGGGTTTAAGATAAAGGG # Right flank : GCTACCTGGCGAAGAAGCAGCGATCGCCGTGTACGAGTCAACGCAACTTCGCACTCGCGAAGGCTTTTTACTAGCGCAACTATGCATAATTACCCAAAAAAGTCAATAAATAAGAAAATATTTATCCAAACTTGAGCTACTTCGCTCAAAGCCTTACCACTAAAGGATATCCTCGACTTAAATAATTATTTCAGAATATATACTGTTATTAGACAAATATGAATATCAATTTATACAATAGCCAATGTATGGACTACAAGGAATTTCACCTGTGTCGGAAGCATACTGGCAAGCTAAAATCTGGGGTTTACTCCACGATCCTGTGCTGAAAGCTTTACATAATAATACTGGCCGAGGTAGCAATAGTTTCTGGCAACAACTAGAAGTAATGCAGAACTGGGTGAACAATGGCTGGAACCCAGAACAGTCTCAGGGTAAAATCTTGGAACATATTAAGCTGGCAGACTATATCTCTTCAGCAAGCGATCGCGGTGCCATTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACTCGCTAGAGAAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //