Array 1 310341-308510 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNRI01000001.1 Streptococcus intermedius strain 30309 30309-contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 310340 32 100.0 36 ................................ ATGTATACTTCCAACTCACACCATTTCGACGATAGT 310272 32 100.0 34 ................................ ATAGTAACCAATGGCTGATAGGCCTGCAATTAGT 310206 32 100.0 35 ................................ TTTTGCGCCACGTTTTACTTTTTGAATATTCACCC 310139 32 100.0 35 ................................ TGTGCTAAAAATCTGTTGAGTAGGCGGACTTTCCG 310072 32 100.0 34 ................................ ATCTCAATAGTGATTATAATTATACAGACACGGA 310006 32 100.0 33 ................................ AAATTCCAGCCTACTTCTCCTTGTGCGTGACGA 309941 32 100.0 35 ................................ CAGTTAATTTTTTTCATTATTTGTCTCCTTTTTCC 309874 32 100.0 37 ................................ AATCTTTAGGTGGAGATACCAATAAAGCAGCAGAAAT 309805 32 100.0 38 ................................ TAAAATACACAGAGATTCCACTAAGTATCAAACTGTTC 309735 32 100.0 36 ................................ ATCAGTTGGTTCATGAATATATAGAAACCAGAAAAA 309667 32 100.0 35 ................................ ACTTGTTTCCCTAGCTACTCCTGAAGTAGCAAGCT 309600 32 100.0 35 ................................ ATCAGCTTGTCTACCAATGCTTGAGAGAGGAAATA 309533 32 100.0 35 ................................ ATAGCTTCTCTAAACATAGTGCCCAAGTTGTAAGT 309466 32 100.0 33 ................................ ACCACTCGTCACATACCCATCTGAAAGATATTG 309401 32 100.0 34 ................................ AAAAACAGATATGATTCATGCTACTGGAGTCGTT 309335 32 100.0 34 ................................ TGCTTCTCTAAGTAACTTGTTCCAACACGATCAT 309269 32 100.0 34 ................................ ATGGCAGATATTGTTTTTGTTGGCGGTTCAGCGG 309203 32 100.0 34 ................................ CCTACAATCCCCGCATCATAGCTGGAAAACCAAG 309137 32 100.0 35 ................................ ATATTCAGGATAATCATAAGCTTATCTCCTTACTT 309070 32 100.0 35 ................................ ATCATAAGACAGGGAGCCTAGGTCTTTGCCTGGGA 309003 32 100.0 33 ................................ AATGAATTTCATGTAGCTAGGAGCAATGAAATC 308938 32 100.0 34 ................................ AAAGTATCAACTCAACAATGATGAAATAAGGGCG 308872 32 100.0 34 ................................ TTTAAAATATGAGATGGCTTATAATACAACAAAC 308806 32 100.0 35 ................................ ATAAAAATGAAGCACGGTATGGTAGCCGTCTCCAC 308739 32 100.0 34 ................................ TTTACGATAATCATCATATCCATCTCCAACTAAA 308673 32 100.0 34 ................................ ATAGCTGAAAACTTTACCATTAAGATAATTGGGT 308607 32 100.0 34 ................................ CTGAAGAGTATCGAAGTAGAATCAAACATCCACC 308541 32 90.6 0 A...............A.A............. | ========== ====== ====== ====== ================================ ====================================== ================== 28 32 99.7 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTGCTGCAGGTAGGAAACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCAGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTAGTTTTTATTAAATGAAATAGCTCAATAAATTCTTATATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCAAAAGTTAGGTTTGGATAAATAGCGAAGCAAACTAACATCTGAGGTCAGAGAGGTTCTAAACATACATATCTTAGGTAGAGTACTTGAAGTAATAAAATTCCCGATATTTCCAACAAAAAAACAGCTCAATAATAGAGTTGTTTTTTTTAAATTGTTAGCAAATCTAAATTTGGGGTTTGTGTTGTGTATATATCTCGATTTTTAAACTTCAAAATTATAGAGAGTGGTTGATAAGTAGCGCTCACCATTATCTGGGGCAAGAGCTAGAATTTTTTTACCTGTTCCTAATTTTTGGGCCACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAGAAGTAACGCGGACAATGCCATCGTAAGCTTGAGTGTCTAGTGTTTCTGGGATAAAACCAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //