Array 1 51137-51896 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBY01000035.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2711 NODE_35_length_52016_cov_4.06166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51137 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 51198 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 51259 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 51320 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 51381 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 51442 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 51503 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 51564 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 51625 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 51686 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 51747 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 51808 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 51869 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2506-3877 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBY01000008.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2711 NODE_8_length_98390_cov_4.91177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2506 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 2567 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 2628 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 2689 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 2750 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 2811 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 2872 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 2933 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 2994 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 3055 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 3116 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 3177 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 3238 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 3299 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 3360 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 3421 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 3482 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 3543 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 3604 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 3665 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 3726 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 3787 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 3848 29 96.6 0 .......T..................... | A [3875] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //