Array 1 439528-440682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKU010000002.1 Listeria welshimeri strain FSL W9-0504 NODE_2_length_446154_cov_103.934612, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 439528 36 100.0 30 .................................... TGGTGGTAAGGGAATATTTCAAGTTTCAAA 439594 36 100.0 30 .................................... AAAGTGACTAGTGTATCAGTATCTACTTCT 439660 36 100.0 30 .................................... TATTTTTTTGGTTTTACAACCTGTTTTTTT 439726 36 100.0 30 .................................... TAATGTACCTGGTATTAAGGCTTTGGCTTC 439792 36 100.0 30 .................................... TTAGATACTGGGACAGAAGCAAACCAACTT 439858 36 100.0 30 .................................... CTGGAAACAGGATGTCCGGACGCGTTCTTG 439924 36 97.2 30 A................................... AGGATGCCAAGTTCGAAGTATTTATGCGTC 439990 36 100.0 30 .................................... ATACTCAAGAACCTGAAAATTATAAGTTAA 440056 36 100.0 30 .................................... AAGGTTCATTTCCGTATAACATTCCTCTTC 440122 36 100.0 30 .................................... CAATTTCCACAAACCCGACACATTTATGTC 440188 36 100.0 30 .................................... TTACAGAAATAGCTTCAAAAGAAGATGAAG 440254 36 100.0 30 .................................... TTAAGAGGTATTTTTCATGGAAGCAATTCA 440320 36 100.0 30 .................................... AGTGGAGGCTCTTAAAACACTTGAACTGTT 440386 36 100.0 30 .................................... TTCGCTCACCACCTCAATATCTTTAATTTC 440452 36 100.0 30 .................................... TTTTAGGGGCACTATTTTAGAACCTTGTTG 440518 36 100.0 30 .................................... CAAGTGATTCATTAGAAGACGCTAGACGCA 440584 36 97.2 27 ..........................T......... GAATATTCTCCCCCATCGCTAACAGGG 440647 36 72.2 0 ............CA.....C.....ATC.A..C.CA | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAATGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAATACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAAGATAAAATTCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACCCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5527-3951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTKU010000006.1 Listeria welshimeri strain FSL W9-0504 NODE_6_length_188831_cov_94.283432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5526 29 100.0 36 ............................. TTAATCCTCACTGGCGTTGCAGTAAATCCAACAACC 5461 29 100.0 36 ............................. TAGTAACCATCCTTTTTATTTATATTTTTTATTAAA 5396 29 100.0 35 ............................. CTTTTCTCCAGGTTTCCGGTTCTAATGCTGCAAAC 5332 29 100.0 35 ............................. TTTTAAAAGGGATTCTAACACCTCATTACTTTCTT 5268 29 100.0 35 ............................. GAGTCAAAGTGGCTGAAAATTATGGAGAAGAAGAA 5204 29 100.0 34 ............................. AACAACAGATTTAAACGGTGCAGCAAGCTTCACA 5141 29 100.0 35 ............................. CTGCTCACATAATGATAAAAGATGTACTCACCTTT 5077 29 100.0 35 ............................. TTGTTTGCCTCCCATTTATTATTATTAGTAATACA 5013 29 100.0 36 ............................. ACTACAGGTGACAGCTCTTTAGATTTATTGCTTTAT 4948 29 100.0 38 ............................. GAAGAAAAAACTGCATTTTTTCAGCAATGTGCAGATAT 4881 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 4816 29 100.0 34 ............................. TTTTTATGAATAACGTTTTCAGTCATGTTCTAAC 4753 29 100.0 37 ............................. ATCATGGGAGGGGATATCTATATTAGATCTACAAACT 4687 29 100.0 34 ............................. TTGTTTTAATTTTTTTAATTCGTCTGGAATTTGT 4624 29 100.0 35 ............................. CGGTCCATATCAATAAATTGTAAAGTCGCTTTGCC 4560 29 100.0 34 ............................. TTTACCGTTAATGCAGATAATGACGGAAAAATGA 4497 29 100.0 34 ............................. AGTGGAACTGGATGAAATTGTAAAGAATCGCTTA 4434 29 100.0 36 ............................. GGTCATGTACTCATCGAAACAGAGGGCGCCCAGTTA 4369 29 100.0 36 ............................. AAACTTATTCACTTAAAAGAGCATATCAATCAACTT 4304 29 100.0 36 ............................. TTTCTCTTATTTCAGCTTCTGTGAATCTTGTTTTAA 4239 29 100.0 36 ............................. GTAAAACAAATTAATTAGTTCATGCAAGGTGCAAAT 4174 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 4108 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 4044 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 3979 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.6 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTAAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTAACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //