Array 1 132942-133149 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVS01000066.1 Pectobacterium wasabiae CFBP 3304 Seq66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 132942 28 100.0 32 ............................ GATTTAAAAACTCGATAATTATCTGTATTAAC 133002 28 100.0 32 ............................ GATGAATACTATCAATTAGCAAGTAATTTCAT 133062 28 100.0 32 ............................ TGAGTCCTCGATTACTGCATAGGCTCCGATTA 133122 28 78.6 0 .......A...A.C......TGA..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGCGAACTGCATGTTTCCATATTGGTGGGCATAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCGCAATTCGGGACCTCATCCTCATAGCCCAGCGCAGAGCAAAATCGCGCCCCAACAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCGCTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCTGACGGGCAGCAGTTAAGTATCTGTCTGGGAGAGGGTGACGAACGGATCATTGTGGAGTGATGGGGGGAGATCAGACGGGATGGAGAATAGAGCCTGTCGCGTACTGCTTCTCACCCCCTTTTTTAACGCACAGTCGTAATTTACTGATTTATAATCACCTTTTTCCGCAGCCATAAAAAAGGGTTTTTCTGAGAAAACAGGATATTCTCTTTAATAATCTGGTGGTTAGCATAAAATTCTTACG # Right flank : AATAAAACTCTCCTAAAGTCAGGAATAAAAAACTCATAGGCAACACGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACCGTCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAACGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGTCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCTGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 149074-150183 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVS01000066.1 Pectobacterium wasabiae CFBP 3304 Seq66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149074 28 100.0 32 ............................ AGACTGATTTTTTCCGGCAGTTGAGTGTTACC 149134 28 100.0 33 ............................ AATAGCACCCCGCCACCAACTTAATTTATTGAT 149195 28 100.0 32 ............................ AGACTGATTTTTTCCGGCAGTTGAGTGTTACC 149255 28 100.0 33 ............................ AATAGCACCCCGCCACCAACTTAATTTATTGAT 149316 28 100.0 32 ............................ AACAACAACGAGCGAACCGCGTAAAACCTGTT 149376 28 100.0 32 ............................ CCAATCGCGCCAATACCAACGGCAATTAGAAC 149436 28 100.0 32 ............................ TGCAAATTTTCAAGCGCAAGCATTAGCGAACC 149496 28 100.0 32 ............................ GCATAGATATTGTCGATTTGGTTATTGCCGGG 149556 28 100.0 32 ............................ GCTACCGTCTGACAGTAAAGACACCGGGCAGA 149616 28 100.0 32 ............................ GCATCCTGACGCTATTTCATTTGCTCGCAATG 149676 28 100.0 32 ............................ CACCACCGGCAGGAGATCAACAGCTAGTCCAT 149736 28 100.0 32 ............................ GGGACAAGCAGTCCGTTCTCTGTAATCGTCAC 149796 28 100.0 32 ............................ ATGAACGCAATTTCATCGGCCTCTGTTCCGAC 149856 28 100.0 32 ............................ TGCTGCTTACCGTGCTGTGCTGACGACGCAAA 149916 28 100.0 32 ............................ AGTTCTGACATTCAGTGAATGACATAACGCGC 149976 28 100.0 32 ............................ AGTAGGGTGTTCGCGCTCTTCCTGCGTGACTC 150036 28 100.0 32 ............................ AGTAGGGTGTTCGCGCTCTTCCTGCGTGACTC 150096 28 100.0 32 ............................ AAGTTTTAGTTGATTGCAATAGATCCGCATCA 150156 28 85.7 0 ....................T....TGC | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGACGGAGGTGCCGATTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGACGTTATCCATAATGTATTTTCTGCCGCTATAGATAATAGGCGCTGATGTCAGCGAAATTAATCGCTGGCTAACTATTTAATAAATAAAAATATAATTTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTAGGAAAATGATGGCTGCAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CTTATCGAAATAAATCACTGGCGCAGCATATTGTGGCGTTATTCCCCATTCAGCGTGACAATCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATGTTTAGGCATCCGTTGGTGATGGGGATCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCAGGCATGTCGTCACTGCCTTCATACGTATGGCGGTAATATGGTTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCTGAGGTATGTTTGATGAACACATGCATCAGCCCGACTTTTATCTGGCGCAGCGCAGTAACCTGCACCAGTATTTCGTCAGTTACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGTCGTATTCCCGCTATCGGGCTTCTCGTGCCAAAATTGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 44301-43721 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVS01000051.1 Pectobacterium wasabiae CFBP 3304 Seq51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44300 29 100.0 32 ............................. CGCTTGTCGACAGCTTCTCTGTTGTCGACAGG 44239 29 100.0 32 ............................. TGGAGTCCTCGTCGTGGAAGACTATCGTAATT 44178 29 100.0 32 ............................. CAATACTCCTAAACCCAAAGGTGCATTGCAGG 44117 29 100.0 32 ............................. ATGCACGCGGCGGCGGCGCATTTAAGAACCTG 44056 29 100.0 32 ............................. CCAGTAATCGTGGGAGAAAAAGACGTGCAACT 43995 29 100.0 32 ............................. GACTTCCAGCAGACGGACGGGACGTGGAATAA 43934 29 96.6 33 ............................A GACAATTGCTTTGTAGGTTGCCCGACTGGCGGT 43872 29 86.2 32 .......AT...TT............... TATCTCAAGACTGGCGCGTTCTTCGCTCAGAA 43811 29 93.1 32 ..A....T..................... TTTGTGACCGTGCAGGGTCACTCGATGGCTAT 43750 29 82.8 0 ..A.........T........CC.....C | T [43723] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCGCAGTCTTCAATGAACGTATTAAAGCGCTCCCTGCTGGCATCGCTTTACTGCGTGTACTTATGGATCAGCATGAGCTAACGCAGAGTGATTTTGAAACTGAGATCGGTAAAAAGTCTCTGGTATCTCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCCAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTCTTGCCAAGCACAGCATGATGCGCCATGTAATAAAGACTGCCTTGCTGGACGGTTATCTGAATAATCCCTGCGTTATCAGGGATTACGTTATGACTGAGATGCATTGTAAGAAATCATAGAAAGGAATACCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTGTTATAAAACAGCTCTCTACTTTTAGA # Right flank : GTTTCTGGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATACCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAACCAGCAGGTGATGGCGAAGCGTTCCACAGAACATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCCGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGCCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAAGGCTCCGCGCTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGTAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATTAATGTTTTCGACACCATCCAGCAAGGTGCTGCGGGTGCATCATCCCGTAGCGAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46995-46295 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVS01000051.1 Pectobacterium wasabiae CFBP 3304 Seq51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46994 29 100.0 32 ............................. TATGACAAATCCAAGTCCAAAGGCGTGGATTC 46933 29 96.6 32 A............................ AAATAATGCTGTCTACGGATTTTTGGTGTGGA 46872 29 100.0 32 ............................. AAATACCATTCTTCGGTGGTGGTGCGTACAGT 46811 29 100.0 32 ............................. GGGAGACGGGCTATACTCCGGAAGGGAGATCA 46750 29 100.0 32 ............................. ATTAGCCGGGTCAGCTAATTCCGTAATTGGGA 46689 29 100.0 32 ............................. AACGCTGACGACACGCTGCTGGAAATCATCAA 46628 29 100.0 32 ............................. TACAATCTGGCGGCGCAATAAAAAGCGACTTG 46567 29 100.0 32 ............................. TGACTGACGGGTAGTAATTCTGCTTTACGTAT 46506 29 100.0 32 ............................. AAGATCAGTTAGCTGACGCTATGGATGACCAA 46445 29 100.0 32 ............................. TGCTCGGATACGTGTTCTGGTACTCCGTAATC 46384 29 100.0 32 ............................. AAGTTGCAGCTAATCGGCATTCTGCCGAATAT 46323 29 82.8 0 ............T........G....TAA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGCTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACAATGCACAGCCACCTGCAATCCCTGAGCCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGTATGCTGGTTGTTGTAACGGAAAATGTTCCACCACGCCTACGCGGCAGGCTAGCGGTATGGTTGCTGGAGGTTCGCGCGGGCGTGTATGTGGGTGACACCTCGCAGCGAGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTAGTGATGGCATGGGCGACCAATACGGAGTCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGACGGACTCCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTCTTCTTCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : TTGAGGGCTGGAACAGCTAAAGGATTAGCTGTTCTGGCTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCTTTGAGTCTGGGGATTCAAGCTGGGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACCTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGTCTGTAAGCTGACGTCTTGATCAATGTGAATGCTAACCACTTTATGAGGAATAGATACGTCATCCTCTGCGCTACGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCGTTTTCAATAAGTTTCTGATATAACTCATATGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAATATTTTCTTTTGATGGGTGAAAATCAGTTGTGGTGTCAAGAAGGACGCGTTTTCCTTCTCAATATGTCGTTGTTGTCCTGCGTTTGACTTCAAGTAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //