Array 1 1894-279 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTQ02000002.1 Streptomyces sp. AVP053U2 APS67_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1893 29 100.0 32 ............................. GAGGGGTGACCGGTGGCCGCCCGTGTCTACGC 1832 29 96.6 32 ............................T CTGCTGTACCGCCATACGGCCACTCCTCGGGC 1771 29 100.0 32 ............................. ACTCAGGCATCAGCCCCTCCACCCTCACCCGC 1710 29 100.0 32 ............................. CGCAAGGACTCCCGCGTGATCCGCTTCGGCGG 1649 29 100.0 32 ............................. CTCGCCAACAGCAAGCTGGAGGAGCGCGAGGC 1588 29 96.6 32 ............................C TGGTGGGCCCTCGGCCGGAACTCCTGGGAGTA 1527 29 100.0 32 ............................. GCGTTCAGGGGTCCGAAAAGATCGCCGGTGGC 1466 29 100.0 32 ............................. TGCCTCAGCATCAGGTAGTCGTTCGGCCCGTA 1405 29 100.0 32 ............................. CTCGGCAAGCAGCTCGTAGCGCGCGGGTATGG 1344 29 100.0 32 ............................. GGTCCATGGTGCCGTGTGCGGCCGGTGAGTTG 1283 29 96.6 32 ............................C CCGCGCTCGGACGGGGGGTCGACGATGTAGCC 1222 29 96.6 32 ............................C CGGATCCGGCCCGAGGCGCCGGCCCGCTCGAT 1161 29 96.6 32 ............................C ACACTCGTTACCACCGCAGGCGCCATAGCGGC 1100 29 100.0 32 ............................. GAACTGCTGCACTCCGACGGACCCATGGGCGG 1039 29 100.0 32 ............................. TACGAGCCGACCAGGCTGCGCCGCCGTGCCCG 978 29 100.0 32 ............................. CAGCGCATGCGCCCCAAGGTCGCCGCCGCCCG 917 29 100.0 32 ............................. GCCTGGATCGCCGCCCTCGAACGCGACGCAGA 856 29 96.6 32 ............................T CAGCCGGTCCACGTCGGGGCGCACCCGAAATG 795 29 100.0 32 ............................. GTGACGTGGACCGGAGGCTCCTCGATGCGACG 734 29 100.0 32 ............................. GCGATGGGGGCCACAGTGCTATCAGCGGGCGA 673 29 96.6 32 ............................C TCGATCTGGTTCATGACGCCGGCCGCGGTGGT 612 29 100.0 32 ............................. GCGTCCAGGATGACCGCGTCCCCCGCGAGCGC 551 29 100.0 32 ............................. CGCGGACCGAACAAGGTCTATCGCGGAAGTTC 490 29 100.0 32 ............................. CTGATGGTGTCCGCGGCACTGACGGACAGGTA 429 29 100.0 32 ............................. GGCGAGCACGTCACGATTCTTGCCCCTACGGG 368 29 96.6 32 ............................T CCACTGGGCATCGGCGCGTGTTGCCGCCGCTG 307 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : CCCGAGGGGACGGACTTCGAGGATCCTGAGACCAACCTCCTGTGGGACGAGCACCTAGGTACCGTCCCCGGCGGCACCAATTACGCCGGCACCGCAGACCTGTCGGCACATGGAATGACGGACAACCACATCGCTGTCATCGGGCCCGAAATCAACGAAACCGAACGAACGCCATGACCGTCATCATCCTCATCGCCGCCCCGGAAGGCCTCCGCGGCCACCTCACCCGCTGGATGGTCGAGGCCAGCGCCGGCGTTTTCGTCGGCAACCCCAGCCGCCGCATCCGCGACCGCCTCTGGGAACTCCTGGCCACCCGCATCGGCGACGGCCAGGCCATCCTCATCGAACCCGCCGCCAACGAACAGGGATGGGCCGTCCGCACCGCAGGCCGCGACCGCTGGCAACCCGTCGACTTCGACGGACTGATCCTCTCAGCCCGCCCCAAAAAACAACTGAATGAAAACAGCAGCCCCGCCCGATAAAACCGCAGCTCAGGAAGT # Right flank : GCAGGACGGCACGTGGATCGAGGACCCCGACTAGGGCGCGTATTCGGTTGTGATCAATCTGCGCGATTTGCTTTCGCGGCAGGGCCTGGACCGGTAGACCTTCCTGGGTGACGCGAGTGCAACTGACGGATGCAGAGTGGGAGTTCATCACGCCGTATCTGCCGATTGGCGAGTACGGCCCGTACCCCGAGCGGCTGCGGCAGCAGTTCGAGGGCGTGATCTGGCGGTTCAAGACGGGCGGGCAGTGGCGGGAGATGCCGACGGAGTTCGGCGCCTGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13278-11841 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTQ02000002.1 Streptomyces sp. AVP053U2 APS67_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 13277 29 100.0 33 ............................. CGAACGCGTGGCAGTCCCGGGGTGCGTCCGTCA 13215 29 100.0 32 ............................. GCGTCTGCCGCGGCTCTGGCGACCGCCCGCGC 13154 29 96.6 32 ............................C TGCGAGGCCTCGATGGCGGCCTCCACCTCACC 13093 29 100.0 32 ............................. GTGGCGGTGATCATCGCGGCGACCGGGATGAT 13032 29 96.6 32 ............................A GCATCTGATCGCCTGCCACGACAAGTGCAAGG 12971 29 96.6 36 ............................C CCCCCCCCGGCACGACGAGCACGGCCGCCGCATCTA 12906 29 100.0 32 ............................. CAGTTCCCCGAGGCCGACTTGCGGAACTTCCA 12845 29 100.0 32 ............................. CCGCGGTGCTGGGTCGTCGATGCGGGCGGGCC 12784 29 96.6 32 ............................T GCGGCGCTGGATCAGCTGGCATCGTCAACGAT 12723 29 100.0 32 ............................. GAGCAGTCGTGACGCGCCGTCTCCTCCACGCC 12662 29 96.6 32 ............................C ACCGCCAGGACCGCGGCGACGTCACGGATCTT 12601 29 100.0 32 ............................. AGGGCGTGCATCATGCGCATCTGCGGGGCGGA 12540 29 100.0 32 ............................. AGAGAGAGCAGTCGTGTTGACTCACGTTACCG 12479 29 100.0 32 ............................. TGGCCGCGGACGACGAAGGCGACGACGGTGAC 12418 29 100.0 32 ............................. GATCTGGAGTACAGAGGTCGGGATGGCCAGGA 12357 29 100.0 32 ............................. GGCGAGCACGTCACGATTCTTGCCCCTACGGG 12296 29 96.6 32 ............................T TCGGCATCGTCTACGGCCTGGACGCCATCGCG 12235 29 100.0 32 ............................. AGGCGTACCGGGGTCCTCGTGGTGGCGGTGGC 12174 29 96.6 32 ............................C CCCGGGTCGACCCGCTCCACGAACCCGCCCAG 12113 29 100.0 32 ............................. GCGAGGCCCTGGCCAAGAAGATGGCCACCGGG 12052 29 100.0 32 ............................. GTGGGGTCGCTCCGCGGCGCGGTGCCGATCCC 11991 29 100.0 32 ............................. GCCCCGCACGGTCGGGACGAAAACGGGGTCCC 11930 29 96.6 32 ............................A TTCCACGGGGACCGGTACCGGGACTTCTCCGA 11869 29 86.2 0 ........T.....T.....A.......A | ========== ====== ====== ====== ============================= ==================================== ================== 24 29 98.3 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : GCCTTTGACCTGTGTTTTCGCTGGTCAGAGTGGTTCGGTTACTGTTCGATCTTGGCGGTCCGTAGCGGTCGGGAGCGGGTAGTGGCGGTACTGATGCTGACTTTGATGAGGTCACGTCAGATTCTGCGACGGATCGACGGCGTGCTGACCGGGGTCCTACAGAGGCAGTATCGACCTTGCGGCTGCGAAGGTCACGTGGGCGGCAGTCGGAGAGTGCGACTGGCGCTCGACAGCAGGATCAGAGGACCCGCAGCTTCGACATCGGCTCGGGAGCAGACGCGTCCGGGTAGTCTCCACGTCCCGGAGGACTGGGCCGGCGCCTCTGTCGGCCTTTTGCGGGAGGAGTTTGCTCGGTCGGTCCGCGGTGGGCACGGTGAGTTACTACCGGCGGCGACTGACGGCGTCCTGTCGATGTTGCTGAACTGGTCCTGGCGTCCCCTCCCAAGAGGGGACTGAATGAAAACAGCTAACCTGCTTGGTAACGTCCCTGCTCAGCAAGT # Right flank : CCGCCACGAGAGTGATCGCCGCTGGCAGCAGGTCACCCTGCACTGGAAGGCACACTCCTCACGAGCCCGACCGTCAGCCGTTCAAGTCAGGAAGAACTGATTGTTTCCGCAGGCCAGGCCCTTTTGTCAGTGGTGGCCTATAAGGTCTGGCACCCAGCTCTGGTGGGTACGTGGGGGCACAGTGGATGTTCGGGAATTGAGCGGGCGTTACGAGCCGGTTGTGGTGCGGGCGCTGGAGACGTTGTGGGGTAAGTCGCGAGAGCGGGCAGGAGGCAAGACGAACCTTCTGCTTGCGCACCTTCTGGACACTGCGGCAGTTGCCGAGCTGCTGTGGGACGGCTTTCTCGCGGGTTCGACGCGAGCGGCGCTGGATGAGGTAGCGGGCGGCCCGGGACGAGGGCGGCGGTTATTAGCCTGGTTGTGCGGAGTTCACGACTGCGGGAAGGCGACGCCGACGCATCAGCGTCTGTGGCCCGAGGGCGCCGAGACTGTGCGCAGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46557-46069 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTQ02000051.1 Streptomyces sp. AVP053U2 APS67_contig000051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 46556 36 100.0 35 .................................... GAGCTGCGCGCTGCTGGTGCTCGTGGTGAACCACA 46485 36 100.0 38 .................................... GATACGGACGTAGTGCGCGGACATGTGTCTCCTTAGTC 46411 36 100.0 45 .................................... AACGACGTCGAGGTTGTACTCCGTCTGGGAGTAGCTGCTCTCCCG 46330 36 100.0 37 .................................... GTCAGGCCGCTGGCCCGCTGCTTCAGGCCGTCGAAGC 46257 36 100.0 45 .................................... AACGACGTCGAGGTTGTACTCCGTCTGGGAGTAGCTGCTCTCCCG 46176 36 100.0 36 .................................... CCGCTCGTGGTGACCTTGCCCCGCCCGTCGATCTTG 46104 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 7 36 100.0 40 GTTTCCGAACAACAGCAGCCCGAAGGGCATAGAAAC # Left flank : GACATCCCCGACGACGACCGCCGCAGCGACATCTCCGACCTCCTCGCCGCCCACGGCGCCCGCGTCCAGTACAGCGTCTTCGAGGTCACCCTCCCCACCAAGAAGGACGTCCAACGCCTGCGCGGCACCCTCCGCCGCCGCATGGACCGCGACGAGGACCAGATCCGCCTCTACCCCCTGCCCGCCCCCGTCCTCAACGAACTCGTCATCCTCGGCAACCGCCGCCTCGAAGAACGCGCCGACTACTGGATCCTGTAACCGCTACCGTAGGAGTCCCGGCAACCACCAACCGCCAGACCACCACAAGCCCCTGACCAGCCCGTAACCACACCCCGCCCGACCAACCCCAGGAGGCCGATTCCTGCGCACGCCATTCCCGCAGGTCACAGCAACACGAACGCCACATGTGACCCGCACCACCCCGTCACAGTGACGTTTCAAAGCACTCCTGCGCAACGGACAGCGTCACCGCAGGTCAGCAGAGGCAAAAACCGCGAAGG # Right flank : GTTCGGCACGGTTACGGTTGCACCCGGCGTGAGACCAGCCGTGATCAGGTCATCGCGGGAGTCTCGAGGTGCGCTCCGGGTGGGCCGCGTTGATGTACCGCATCGCTGTGTGGGCGGAGATGCCGAATAGACGGATCAGGTGTAGCGGGTCCTCGACTTCGAATGCCTCATCGCGGATCCGGTCCTGCCGGAGCGTCGGCATGGTGAGCCCGGTGGGCTGGAAGACCGTGCTGAACGTGTTCGTGCCGATGGCCGTGTGCGCGGCGTCCACTGCGGTCCACCGGTTGATCAGCACATGTGGGTTGGTGGTGGCCGGCCAGCGGTGGTGGCGGAGAATCGAGGACCTGGCATGGCCCTGACCTGCTGACGGGCACCTTCACCCCTCTTGGTGGCCTCGCGGGAACCTGCGCGTCCTCCACTAATTTCGACGGCGAGTTCGCCGATCGGGCAGCCGCACTGGCTGATGCCCCGGAGTATGCCTCCGAGCACACCTGCGAGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAACAACAGCAGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 747-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTQ02000074.1 Streptomyces sp. AVP053U2 APS67_contig000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 746 36 100.0 36 .................................... GACTGAGACCGCGAGCTCTCGGACACACCACAGTGG 674 36 100.0 37 .................................... CTCCCCGCTCTGGGGGCAGTTGTAGGAGATCGCGGCG 601 36 100.0 36 .................................... CCCTCCTGCGAGTCCTCGCACCAGTACGGTGCCAAG 529 36 100.0 37 .................................... CATCGTTGTGATGACCATTGCCGCGACGAAGCCCACC 456 36 100.0 33 .................................... CCAGCCGCTTGCGGTGAACGACTGTGACTTTGA 387 36 100.0 34 .................................... TGCGGGTTGTTCGTGAGCTTGCACATGGCAGCGG 317 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 36 GTTTCCGAACGGCGCAAGCCCGAAGGGCATAGAAAC # Left flank : GTCCCCGAGTCCAGCGCAGCGAGCCTCTTCGACAGCCTCCTGCTCACCGCCCACGACACCGCGACCACCACCGTCACCCTCGGCCCCGGCAGGCGTACCGGCTTCACCGGCACCGCCACCTACGCCCTCCACCGCCATGCCGACACCGCCACCCTGCACACGTTCACCGCCCTCACCCACTTCGCCGCCGTCGCCGGCATCGGCGCCCAGACCACCCACGCCCAGGGCTACGTCCGCGTCAGCCCCCACCACCCACGCGAGCGCGCCCCCACCGCACAGCAGCCCCGACACCATGACCGTGACCCCCGCCAGACCAGGGCGTAACCGCAGCTCCGCCGGCAAGCTCCAGGAGGGCACTTTTCGCGCAACGCGTTTCCGCAGCTCACAGCAGGCGGCAACACGCAATGTGAGCCACGTCACAGCAGAGAGGGGCTCGTGCGGCGCGATCCTGCGCAACGGACAGCATCGACGCAGGTCGAGACGGGTAAGATGTTGCAAGG # Right flank : CGAAGAGCGCGCCGATCAGCCCGGTGGTGAAGACAGGGTCTTTGAGAAGTGATCTTGTGTCCGGGTTCGTCAGGTCAGTCCGAGGGCGGTGAGGGGCCGCAGGTGGTTGCGGGCGGTGCGGCGGAGGGCGGCGGCGATGTTGGTGTGGCCGTCCTGGCGGTGGATGCCGATGGCGAGGTTGCGCAGGCCGGCCATGACACGGGGCAGGTTGCGGGTGCGGATCTTGGAGGCGTCCTCGTGGAAGGTGCGGTCGCGGACGTGGTGGAGCTGGTTTTCGATGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAACGGCGCAAGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 12113-12436 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTQ02000074.1 Streptomyces sp. AVP053U2 APS67_contig000074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 12113 36 100.0 35 .................................... GTCAAAACCGTGAGACCGGCCGTGAAGACCAGCCT 12184 36 100.0 38 .................................... CGGTAGAGGACGGTGTAGCTGCCCTCCGCAGCGGCCGG 12258 36 100.0 36 .................................... GGGTGACCGGACCCTCGGCCTCCTTGGAGGACTCGA 12330 36 100.0 35 .................................... CAGAACCAGCTTCCCCATCCCGCCACGCTTCTTGT 12401 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 100.0 36 GTTTCCGAACCGCGACTGCCCGAAGGGCATAGAAAC # Left flank : CCCGCCGCTTGCCCGTCACGAACATGAACCGCGTGATGTTCCACGCCTCGAACGACACCACCCGGACCCGTATCGACACCCCCACCAGCCCCCTCCCGGACGCACACGCCCACCGTCAGCCGTCGGGCCCGCACCCCCGCACGAACGCCCCACACGGGCCCGAACCGTACCGCCCCCTACCTCCCCACCACCCGAGAATCCACAAACCACCCCTCCCCACACGAACTTCCCCACATCACCCGCCACCCGGATCCAGGCACCGGTAGCATGCGTGCGCACCGGCCCCTGACTCTCACCGCGACGCCGACGACAAAACGGCCGTAACCGCCCTCACGCGAAGCACCGCCGACCACGCGACTTCTGCGCGCACCGTTTCCGCACGTCAACCAACCCCCGAGGACACGCTGTGACGTGGATCACCATCACTGAAGAGGCGTGGCGAACGATCCTGCGCAACGGGCATCATCGTCGCAGGCCACCGGCAACGAAAACCGGGAAGG # Right flank : AGTGCGGCGCGCGGGTAACCCCAGGGTCTTTGAGAAGTGGCGAAGTGGGCTGGTTCGCCTACTGAGTTCCGGATGTAACGGCTTGTCGACTTCTGTCGGAGGCGACCCTGGACGCAGAACAGGCATGGCCGCTGGTGATCATGTGGGTGTCGAGTCCGTATGAGCACCGAGCGAGTCCATGCCTGCGAACCCATCTTCCCGCATGCCGTCATGCCTCCAGCGACTGGGGGACGCCTCCGGCTCAATCCCGCTGGAGACAGCCGCTGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAACCGCGACTGCCCGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 390-2066 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTQ02000093.1 Streptomyces sp. AVP053U2 APS67_contig000094, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 390 29 100.0 32 ............................. ATCCTCCGCAACCCGCAGGCGGTCACCACGGA 451 29 100.0 32 ............................. CGTTCGAACTCCGGGCTCCCCTTCAGGTTGCT 512 29 100.0 32 ............................. AGAGCATGCTGCGGGCCGCCCGCCTCGGCTGG 573 29 96.6 32 ............................C TGGATGACCCCGCGGGTACCGGTGAAAGGTGA 634 29 96.6 32 ............................C AGCCGACCGGCGACGATCCACGGTGATCCGCT 695 29 96.6 33 ............................C TCGGCCATGGCGTCGTCGAGGATTTCGGTGGCG 757 29 96.6 32 ............................A CTCAGGGCGACCTTCCGCCACCGCTTGCTGGA 818 29 100.0 32 ............................. GCGTCGCCCACCCCGGTCAGGCCGAGCTTGAG 879 29 96.6 32 ............................C CCGCGCGTGGATCCAGGCCCGCGGCCTGACGG 940 29 96.6 32 ............................T CCGGCTCCCCTTCGGGTCTACCCCTCGTGCGG 1001 29 100.0 32 ............................. CCGGTTGTCGACTCGCCCGTGGTCGCCCACCG 1062 29 96.6 32 ............................T CCGGGGTCGTTCTCGGTTCCTCCGTCGAAGAA 1123 29 100.0 32 ............................. CGAGTCGTCACACGCTGGTACCGGCAGCGGCC 1184 29 96.6 32 ............................C CCGCCGCTACCTCCAAGGTCTGGCCGCAGATC 1245 29 100.0 32 ............................. GGGCAGCTCATCCTCGACCGGGACCGTACCCG 1306 29 100.0 32 ............................. CGGGAACCGCGGCTGCACGTCCCCCTTCCCGG 1367 29 96.6 32 ............................T GCCGACGACATGATTGGCAAGATTTCCGAGGG 1428 29 100.0 32 ............................. CGCCAGAACGCCCAGTACTTTCCCACCCCGAC 1489 29 100.0 32 ............................. CGAGTCGTCACACGCTGGTACCGGCAGCGGCC 1550 29 100.0 32 ............................. TGTTTCGGGGTCAAAGAGGTTGCCCAGGGTCG 1611 29 100.0 32 ............................. GCGCCATGCGGGCTCGCCCTGGCCGACGAGGC 1672 29 100.0 32 ............................. GCGCTCCAGGAACACCTGGGGCAGCTCGGGGG 1733 29 100.0 32 ............................. AGGTGACCGAGCACGAGCGGGGGAGCGCAGGA 1794 29 100.0 32 ............................. CGTCGGTACGGGTTCCCGGAGTTGTAGCGGAG 1855 29 100.0 32 ............................. GTGTCAGCCACGGGGCACCGCCGTGGGCGTCG 1916 29 100.0 32 ............................. GCGGCTCCGATGCTGCGGCCGTTCTTCCCGGG 1977 29 96.6 32 ........T.................... CCCGCACCCCGAAGTGCCGGATGGCAGGCAGT 2038 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.8 32 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : AAAGGTGCGGGTGCGCGGGCCCGTCGGCCGTCCGCGCACCCGGCCCGGTGCAGTCGCCGGGGACAAGGCGTACTCGTCCCGCGGCAACCGCTCCCACCTGCGCAAGCGCCGCATCAAGGCGGTCATCCCGGAGAAGAAGGACCAGGCCGCCAACCGGAAGAAGAAGGGCTCCGCAGGAGGCCGGCCCGTCAGCCACGACGCCGACCTCTACAAGGACCGGAACACCGTCGAACGCCTGATCAACAAGCTGAAGGCATGGCGAGGCATCGCCACCCGATACGACAAGACACCCGCGAGCTACCTCGCCGGAATCTACCTACGCGCCTCGATGATCTGGCTCAAGGACCTCATCCGGACCATCTGTTGATCACAACCGAATACGCGCCCTAG # Right flank : GGTCAACCCCCGCTGGTCGGTCTACGAGGAGCAGTCGACCCTCAGCGAACACCCCGCAGTAAAGACTTGGGAATGACTTTCAGATGACGTTGACCCATCAGTAACCACGTTCTGGGTGCCGCCGGAGCGAACGGTCCTGACATGCTGAGCGCCATGGTGACTCTCGATGGAAAGCCCGTATCCGTAGACAACCTGCTGCCCCTGGCGCTCACGAACGTCGGTCACTTCACGTCCATGCGCGTCGACACCGACGGCAGCATCCGCGGCCTGACGCTGCACATGGAACGCCTCGGACGGGACTGCAAGATCCTGTGGCACGCACCTTTGAATACCGACCGCGTGCGCGAGTACGTCCGCCAGGCTTTGGAGGGGCAGAGCCGCCCGTGCGTCGTGCGTGTCACGGTCTACGACCCCAAGGTCGAGATGGGCCATCCGGCCGACGCCAACGAACCTCACGTCCTCGTGTCCGTGCGCGGTGCCGACGCCCTGCCTCCGGCTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //