Array 1 2403537-2411536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQIU01000008.1 Brachyspira sp. G79 scaffold00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2403537 31 100.0 36 ............................... GAAGTCAGCAGGACATGTCGTTTGTAATGTATTAAC 2403604 31 100.0 36 ............................... TGCTAAAAGTAAAAATGTAAAACATATACATTGTCT 2403671 31 100.0 36 ............................... AAGAATAAATATTTTTAGTAAAAATAAGTTGTATGC 2403738 31 100.0 35 ............................... CTTATCCATCCGTATGCTTGTCTCTTGAAGTCAGC 2403804 31 100.0 36 ............................... GTATTTAAAGCGAAAATACCAAGGATATATATAGAC 2403871 31 100.0 36 ............................... TCAAATTGCCCGCCCTCGTTCCCCCTTGTCAAACGA 2403938 31 100.0 36 ............................... TTATGAGAGAAGATTATAACGACGTGTTTGGACTAA 2404005 31 100.0 36 ............................... GGAGCATATATGATGAGTGTATATAACGTTATGAAG 2404072 31 100.0 36 ............................... AAATATCCTTGGATAAATGAAGCAGGCCAAAGAGCA 2404139 31 100.0 37 ............................... ATTTAATTTGAGTTTTCTAATAATATCAATTAACAAA 2404207 31 100.0 35 ............................... CAATTTAAGGAGTATAGAATGAATATATTATATAT 2404273 31 100.0 37 ............................... AAGCCGAAAAAGAGGTCGCTAATATCAATAAAAAAAT 2404341 31 100.0 37 ............................... CAAAATCAAATTGTAGAAAAATCTTTTAATACACAAT 2404409 31 100.0 37 ............................... TATAGTACATACATGATTAATCAAGTATTAGAAGCAA 2404477 31 100.0 35 ............................... TTTTGATCCTGCTGTTCTATTCCCTACATTTACAG 2404543 31 100.0 37 ............................... TTTCAAACTCAAAGTCATCAGTCGGCTGTGTTGCTAA 2404611 31 100.0 36 ............................... TAGTCAAATAGACTTTTATAAAAAGAACTTTACCAA 2404678 31 100.0 37 ............................... GAGGAATACTCGTTAAAAACTCGACATTAAGAACAAT 2404746 31 100.0 37 ............................... GAGGAATACTCGTTAAAAACTCGACATTAAGAACAAT 2404814 31 100.0 36 ............................... AGATAAACGCGTACGACAAGCGTAACAACGACCGCA 2404881 31 100.0 37 ............................... AACGAGAAGCACCTTTTCGTCTCGTTTCTTTAGGTAT 2404949 31 100.0 36 ............................... AGATTTAAAAAAAGACACTGTATATCAAACAATAAC 2405016 31 100.0 36 ............................... TCTTATATATATAAAAAAATAAAGGGGTTATACTTA 2405083 31 100.0 36 ............................... TATGTTGAGAGATTGTTGAGCAGAAGAAATGCTAGT 2405150 31 100.0 36 ............................... TCGTTTAAATAATTATTTGAAGGATTAAAAATATGG 2405217 31 100.0 36 ............................... GGACTTGTAAAGACTTAAAATGTTTAAATAAATTAT 2405284 31 100.0 36 ............................... TGACAATATATTTATTTGATTTATAATAAGATTAAG 2405351 31 100.0 36 ............................... AAACTTTTTTGCTAAAAAACCGTTACTGTAATAACA 2405418 31 100.0 35 ............................... GTGATAAAAAAAATAGATGATAAAGCTGTACTAAA 2405484 31 100.0 36 ............................... GAACTGAAAGAAATTATACAAGTTTAATTGAAGTAT 2405551 31 100.0 36 ............................... CAGTGTCAATCGCCGATATTAAAATCAAGTTAACAT 2405618 31 100.0 36 ............................... ACAACTACATACTTTACATCTAATTTTATAATCTTC 2405685 31 100.0 36 ............................... CAGGCAAAAAGGAACTAGTCCTAGTATACCTATTCA 2405752 31 100.0 37 ............................... TATCTGAAATAGTTCAGATCGTTGCCACAGCTCTTGT 2405820 31 100.0 36 ............................... TTTTTATATGGACTACAGCCCTGATATAAAAAAATT 2405887 31 100.0 36 ............................... TATGATAGCAAAGGATATAATATTTATAAAGAATTA 2405954 31 100.0 36 ............................... AATAAACTTTTCCCAATCTTTCCATAAAAGACGACT 2406021 31 100.0 36 ............................... TGCGTCCTCTTCCTCTTGTGAGCACACCTGGGTTGA 2406088 31 100.0 37 ............................... CAGTTGCAGGAATTGCAGCTGGGTTTATTGCAATAGC 2406156 31 100.0 35 ............................... ATATATAGATGATGTTATAAATGAGGAGGAATAAA 2406222 31 100.0 36 ............................... CTGGATAAAAGACAATAAAATAGTCTCTCTTAAAAA 2406289 31 100.0 35 ............................... GCATATAAAATTGAAGTCCCAAAACTTATATTACA 2406355 31 100.0 36 ............................... TCGCGAGCGACCTTTTCGTGTTATGTCTCAAGGTCT 2406422 31 100.0 36 ............................... AAAACTGGAAATAGAAGCTAAAAAGTCAATGAATAT 2406489 31 100.0 37 ............................... ATACAATAGATAGCATACTTTTATCATATGATAGCAA 2406557 31 100.0 36 ............................... AATAATAGACTTTAATAATTTTTCTAATTCCTGATG 2406624 31 100.0 35 ............................... TCACATTTAGCTTGTTTGATACCTTGTACACCTTC 2406690 31 100.0 35 ............................... TATAAAGCATATAACGGCGGTTGTAAATTATTACT 2406756 31 100.0 36 ............................... TTTTATTATTTTTTTTGTCATGCTATATCCCCTAAA 2406823 31 100.0 36 ............................... CGTTGTAGATAAAATAATAAGCACGTCTTAAAAAAT 2406890 31 100.0 36 ............................... TCAAATTGCCCGCCCTCTTTTTCTCTTGTCATACGA 2406957 31 100.0 37 ............................... AGGTTAGCAATGATAACTAGTACATATAATAAAAACG 2407025 31 100.0 37 ............................... CTAAAGCACTACGTCCTATGCCTTTAATAAGCGAGCC 2407093 31 100.0 36 ............................... ATGACTGTCAATGTTATCTTAGTTTATTAATACAGT 2407160 31 100.0 36 ............................... TAATGAAATATCAGAAAGCGATGAGTATTATTACAG 2407227 31 100.0 36 ............................... AACCTCATCATCAGCATTTTCAGTTTTAGCAATATA 2407294 31 100.0 36 ............................... TTTGTAAGGCTTGCCACCTGTTTTAACTCTAGGAAA 2407361 31 100.0 36 ............................... AAAAGACTAAAAAGATTAAAGTCTTTATGTAAGAAC 2407428 31 100.0 34 ............................... ATGGAATTAGCTTGTAATCATGATTATGATACTA 2407493 31 100.0 36 ............................... ATTTTAACGAGCTTATAACTAGATTAAATAATAATA 2407560 31 100.0 35 ............................... AAGATATGATAGATTATTTAATAAAAAATATAAAG 2407626 31 100.0 36 ............................... GCATTATGCACCACCACCTAAATCACTTTCACTAGC 2407693 31 100.0 36 ............................... AGATACTGAAGACAGTTCTAATCTATTATCATATTT 2407760 31 100.0 35 ............................... CTTTTATAAGTACCGAACGAACGCCCTACTAAAAT 2407826 31 100.0 36 ............................... GCTTCTAATACTTGATTAATCATGTATGTACTATAA 2407893 31 100.0 36 ............................... TACGTCGTTATAATCTTCTCTCATAAATTGATACAT 2407960 31 100.0 36 ............................... ATTTTACGAGTGGTTTTACTTCAAGACAAAAAGGTA 2408027 31 100.0 37 ............................... TTAACAACCATTCTTTAGGTACTACACTATTATAAGT 2408095 31 100.0 37 ............................... ATAAAATCAATAATGGTAATATATATCTAATAGATGC 2408163 31 100.0 36 ............................... TAAATTAATTCTCTATCAAATTGTCTATCTAGTTTA 2408230 31 100.0 36 ............................... TCAATAAGCATTGCTAAATATTTATCTGTTATAGTT 2408297 31 100.0 35 ............................... CCTTTAGACTTATATATTGTACTCAATACACCGTC 2408363 31 100.0 36 ............................... TAATAATATAGTTGAAATATATTTAATACAAAATCT 2408430 31 100.0 36 ............................... AAATAAATCAGCAAGGAAAAATAATAATGATTTTAG 2408497 31 100.0 35 ............................... TGTAAAGAAAATATGTATATACTAGATTGTTTTTG 2408563 31 100.0 36 ............................... TAAGTAATCAGTATAAGCATTCATTAATTTTTGTAA 2408630 31 100.0 36 ............................... TACATCTTGTATTTTGTTAAAGGTATATAATGTAAA 2408697 31 100.0 37 ............................... CTTCATTAAAACAAAAAGTATAATGAGTATCATCATC 2408765 31 100.0 35 ............................... ACACAATCATTATTAAAGTTAGCACCAGCCATTAA 2408831 31 100.0 37 ............................... TAAGAATAAATATTTTTAGTAAAAATAAGTTGTATGC 2408899 31 100.0 36 ............................... TGATGCATTTGCATTGTAAGATTTTCTAACATCTCA 2408966 31 100.0 36 ............................... GGGAGTGTAAAAAATGATTAATAACATATGTATAAC 2409033 31 100.0 36 ............................... ATAAATATATTAAATGAAGTGTACGGTGTCGGTCTT 2409100 31 100.0 36 ............................... TGATATTTCATTATCTTTAAAAATATTTTTTGAAAT 2409167 31 100.0 36 ............................... TGCTAAAAGCAAAAATGTAAAACATATACATTGTTT 2409234 31 100.0 37 ............................... AGAGGTAATTTATGACTGAAAAATATTTGAAAAAATT 2409302 31 100.0 36 ............................... TGTCTATAGAGAATGTAAAATCTATACACGATATAA 2409369 31 100.0 36 ............................... AAGATTTCATAAAGATGTTGTATTATGATGACTTAA 2409436 31 100.0 36 ............................... AATCGCTAATAAATCATCATCTGCAATTTTAGCAGT 2409503 31 100.0 36 ............................... TATTATAAAAGATATAAATATTGAAATTAGTACAGC 2409570 31 100.0 36 ............................... TATTATAAAAGATATAAATATTGAAATTAGTACAGC 2409637 31 100.0 36 ............................... AACTATTACATTAAAATATTTAAGTGAATTAGAACT 2409704 31 100.0 37 ............................... TAAAATCAGAAGTTCTTTTATAACTATAAACTATAGT 2409772 31 100.0 36 ............................... TCAGCCTCACAACTCTGCATCTTTTTCATTACGTAA 2409839 31 100.0 36 ............................... CGCTAGAGTAGATATAAATATATTAAATGAAGTGTA 2409906 31 100.0 35 ............................... ATATCAATAATACTACGTTGACTATTTTGCAGTAC 2409972 31 100.0 36 ............................... GTTATTAAAAAATAAAAAGAATGTGCCTGCTATTTT 2410039 31 100.0 36 ............................... TAAACCAACTCTTAAACCCACCTCATCAATAAATGC 2410106 31 100.0 36 ............................... GCGGTGAATTAAGACAAAACAGATATAAAGATAAAA 2410173 31 100.0 36 ............................... ATTTTCTGATGCATTCAAGCGAGCTTGTTTTAATTT 2410240 31 100.0 36 ............................... TTGCTGTATTAAGTTGCTTAATCGTTGTCGCATTAT 2410307 31 100.0 36 ............................... AAAGTTTTATAAAATATATTTAACTTTATAATATAA 2410374 31 100.0 37 ............................... CTACATTTATACGTATCTTTTCAAACAATTCTATGTT 2410442 31 100.0 36 ............................... TTGTCAATAGTAAATATAAAAAAATGAGCTAGTGAT 2410509 31 100.0 36 ............................... TAATTGAATGTCTTGTAAGTCTTTGACCATTATTTC 2410576 31 100.0 36 ............................... AGATAATATAAATACTTGGTCTAATTGTATGTTAAA 2410643 31 100.0 36 ............................... TTAGAACTCGGTTGTTTTATAGCTAGCTTATGGAAT 2410710 31 100.0 36 ............................... TAGTAAATGGAATGCTGTCGGTCAATCTGCTAATGC 2410777 31 100.0 37 ............................... ATAGTGAAGTAAAACAAGTTGATACATTTGTAAAGCA 2410845 31 100.0 36 ............................... GTGTCAATCGCCGATATTAAAATCAAGTCAAAATAT 2410912 31 100.0 36 ............................... ATCGATAGACTGGTCATTATCAGATTGAGCCCAAAC 2410979 31 100.0 36 ............................... CTACATTAAATGATTTATTAATAGCTAGTCAAGATA 2411046 31 100.0 37 ............................... GTATTTGTGTATAGCAAACATAAAAGCGATATGTCAG 2411114 31 100.0 35 ............................... GACCGCCCATAGCAAACCTTTCACCGCTACTACTT 2411180 31 100.0 36 ............................... TTATTACAACACTTACTAGAGAATTTGTTTTTCAAA 2411247 31 100.0 36 ............................... CCTCCAAAAATACCAATAGCAGAATACAGTAACGAT 2411314 31 100.0 36 ............................... TAATGATTGTGTTACAAATCGTAACTTGTTAGAGTT 2411381 31 100.0 36 ............................... ATACGCTTGCCTTTTGAAATCTGCCGGACTTGTAGT 2411448 31 100.0 25 ............................... CCGTATATCCAAAACTATTTTTCTA Deletion [2411504] 2411504 31 74.2 0 .........TT.A.T..C...A..C.C.... | A,G [2411512,2411529] ========== ====== ====== ====== =============================== ===================================== ================== 120 31 99.8 36 ATTTACATTCCAGTATGGTTAGATTAGAAAT # Left flank : AATTATCAGCAAAATAACTTTCAAATATTACTTTGCCTTTGTTTATAATGTAAAATTTTCCGTCTGGATATTGTCCAGATATGAATAGTGTTGATGATTTTTTGAAATTAATTTTATTATAATTTATCATCATATTTACAGACCCCTTAATAATAATAATAATATATTGTATTTTTTTAAAAATGATGTTACAGTAACAGTATCATAGATAGATAGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACGGATAACACGATCATTTCTATACCATAAATTATAATTACGGCTGTATTATAATATATTTGTTTTATTATGTCAATATAAAAAATTAATGTGATTTTTAAGAGCAGTATATATTATGTATTTATTAATTATAAATATTATATTATGTTTATAATAGTAACTATATCATATTTTTTTAGTTCTTCTTGTAATTTTAA # Right flank : TACATAATGAAAAAACAGTTAATAAATATATTTTTATCAAAAATCTTCTGTCGATTAAGTAGAATTTTATAATAATTATGCTTCGACAATAGATATATTCTATATAAAATTAGATGTTTTGTCAATGCCTTCTTCTACCAAAAACTCTTTATCAAGCCATTTTTCATTACGACTTTTAAAAACTATACAAGAATCTTTTTCTTTTCTTAAAATGTCAAAGAGCTTATTTTTTAATTCCAAATACTGCACTTTTGAGAGCTCCCCCTCAAAGACAGATTTTTGTATATGATTAAGATATGCCTTGCAAGTCTTAAAAACTGTTCTTGCAACTCTAGCACCATCTTCGTCATCTGTTTGTATATCATAAACTAATATTAAATACATTGTTTCTTACCACCATATTACAAAAGGTTTATATTCTTTTTCATTAAGCAAATGTTTAGAGATTTTATAAAGTTCTAATCTAATCAAATGCTTATATGATACATCTCTTTTCAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCAGTATGGTTAGATTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //