Array 1 167024-164174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028926.1 Pasteurella multocida strain 20N chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167023 28 100.0 32 ............................ AATCAATCCAAAAGACTTATAATAAAAAGGAG 166963 28 100.0 32 ............................ TTGTCACTGATGTGAGCGTTAAAAGCGGTGAT 166903 28 100.0 32 ............................ ATAATCAGTAACAATTCCACTAGAATCTATTT 166843 28 100.0 32 ............................ CAAGTAAAAAAAATCATTTCCCAAGACATATT 166783 28 100.0 32 ............................ CAAACCGCTACCACCTGAATTATTATTACCTT 166723 28 100.0 32 ............................ TGTTGCGCTGATATTGTTCGTTGCGTTTCTAG 166663 28 100.0 32 ............................ ACAGTCAGACATTGGCAAAATGTTGATGGAAA 166603 28 100.0 33 ............................ CGCAAGGATTTTTAAAATGCGACGGGTCAACAT 166542 28 100.0 32 ............................ TCATTGGCACTTGTTGCTATTTGTTGAACAAG 166482 28 100.0 32 ............................ CGATCAACCAGCAAGCCTTGGCACAACACAGC 166422 28 100.0 32 ............................ ACTTCACGAGCGACAAGTTGAACATTTATTAA 166362 28 100.0 32 ............................ ACAAAGCCCACATCACCTTTATTGATTGTCGG 166302 28 100.0 32 ............................ ACTGATGCCCGCTGGTTTGCGGGGGAAGTGGT 166242 28 100.0 32 ............................ GCATTGCAAAATCTGAAAAAATACACAGAAGA 166182 28 100.0 32 ............................ ACTTGCGATTACGTCTGCTTCTGATTCGATGT 166122 28 100.0 32 ............................ TACATCTAATCCATTCCCAGCATTACGAATAA 166062 28 100.0 32 ............................ GCTGTCGGTGATGTTGTGTGTCACGCTTGTGA 166002 28 100.0 32 ............................ TCAACTGCCCGATCATACGCAATTTTCACTGC 165942 28 100.0 32 ............................ ATAAAGCTCTAGAAATTCGGCAAAATCATGCA 165882 28 100.0 32 ............................ TCTGGAAAACCCGCAGATGAACTTAAATGAAA 165822 28 100.0 32 ............................ TATCGCATTACCTGAATGTTCAACATAGAAAA 165762 28 100.0 32 ............................ TAGAAAAGGAGGTTAATTATGACAGGTGTTAC 165702 28 100.0 32 ............................ GTTTTTCTAGCGTTGTCGAACCGGTCGGCAAT 165642 28 100.0 32 ............................ TGCTGAACAAATGAAGACTATGCAGGATGGAA 165582 28 100.0 32 ............................ TTAAAACGGTCTAACTGCCACACGGTCGCAAA 165522 28 100.0 32 ............................ AATACACCCTTGCGCTTCAACGTTTTTAAAAT 165462 28 100.0 32 ............................ TCCTTATTTGTGCACAAGACAGGAAAGCTACA 165402 28 100.0 32 ............................ AGTCATTGAAGAGGACTAGTAATGTACGCAAC 165342 28 100.0 32 ............................ ATATAAACAACTTAAAGGGATACGCCCTTAAG 165282 28 100.0 33 ............................ ACCAGCAAACATGTACGGATTCACAGACTGTCC 165221 28 100.0 32 ............................ TATGTAGCTAAGCGGGGCAATGAATTTATTTT 165161 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 165101 28 100.0 32 ............................ ACAATAACTCGACCACTTGCCACATCAAGTCC 165041 28 100.0 32 ............................ TTTCGGCACGTTCACCACGCGCGGATTGCCGG 164981 28 100.0 32 ............................ AATCCAGAATAGCGATCTAAGCTTGCTTGTAG 164921 28 100.0 32 ............................ TTCTTCGCCTTCAGCAAATTCAGGATTACGCA 164861 28 100.0 32 ............................ TATCTAAAATCGTGGATACAAGCAGGCGTTTT 164801 28 100.0 32 ............................ TACCAAGAACACGCCAACCGAGAAAATCAGAT 164741 28 100.0 32 ............................ GTGTGTAATAATTGAGTAATCCCACTCTTTCA 164681 28 100.0 32 ............................ TGAAAAGGTTACGGCTCACACCGCTATTATTC 164621 28 96.4 32 ...................A........ ATTCGATTTGCTCGTGTTCGACTAAATCGTGG 164561 28 100.0 32 ............................ ATATATCACCCCAACTAAGCAGATAATAAAAT 164501 28 100.0 32 ............................ TTTTATCTTCTTCAGTTCAACAAAATCTGAAT 164441 28 100.0 32 ............................ TTTAATATCTTAGATGAAGAAACGTGCGGCGA 164381 28 100.0 32 ............................ TTTACCTCGCGCTATCTATATGATTTATGATG 164321 28 100.0 32 ............................ TATAAACCGCCTGAGAATGAAGAAAAGAAAGC 164261 28 100.0 32 ............................ TCTTAAAATCCCAGTACCAAGCACCGCAGCAT 164201 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTGGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACTTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAGTTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGCACCCCCTTGTTTAATGGCACAGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 468938-470293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028926.1 Pasteurella multocida strain 20N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 468938 36 80.6 30 ...A.TT..GTGG....................... GCGTTACTCAAATTAAACTTGTTGGGATTT 469004 36 100.0 30 .................................... TTTATGCCAAAACAAGGTCAGCAACATGAG 469070 36 100.0 30 .................................... AAGATCAACAAACTGGTGCGAATGCAAGCT 469136 36 100.0 30 .................................... GTTGCCAAATCTATTTTGGGCTTTTTCAAA 469202 36 100.0 30 .................................... CCCCAAACGTCCCAACCGTCTGTTTTGTTT 469268 36 100.0 30 .................................... TTTAGCGGACTTATCAGTTGTTATAACGCG 469334 36 100.0 30 .................................... AAGTGTGGGCTGATAAAGCAAGCGGTGAAA 469400 36 100.0 30 .................................... TAACAAGCTTAACTGATTCAAAAAAATGAC 469466 36 100.0 30 .................................... ATGCATATCAAATATACATTGGCGTTTATT 469532 36 100.0 30 .................................... TGCGACTAAATAGCTATGACGTGTCATGCA 469598 36 100.0 30 .................................... GCTGATTGCTTGAAGTTGTTCAATTCATCA 469664 36 100.0 30 .................................... TCTTAGTATTATTTATATTTATATATTTAT 469730 36 100.0 30 .................................... ACGTAGTGTTCTGGATAAAAGCATTCGGTT 469796 36 100.0 30 .................................... GATTTGCATCGGCGGACGAATAGTATTGGC 469862 36 100.0 30 .................................... TATTAGACAAACAAGTGGCGATATTGGCAG 469928 36 100.0 30 .................................... CTACAGATATTGGTAATGGATTGGCGAGAA 469994 36 100.0 30 .................................... TCCCCATAATGAGTTAATCGAGTTTTGTTT 470060 36 100.0 30 .................................... TTCCTTGTGTTGCTTTAGCTGGGAATACCA 470126 36 100.0 30 .................................... TGGGGATTATTGTTAACATATTTGACTACG 470192 36 100.0 30 .................................... TTAGATGATCAGTATGAAAGAATGTCTATG 470258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : AATGACCTTAAAAGGCTTGCCGCTTGCTTATAACAAAGATATGCAGGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGACCCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCTGCTTTAAAAGGTTATTCCAACGCCACTGAACTTGCCGACTATTTAGTCGCTAAAGGGGTACCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCGATTCAACAACATAAAGCCCTTGAGGCGCTCAGCGTTGCTGAGTTTAAACAGTTTAGTGATGTTGTCGAAGAGGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTAAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TTTGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAAAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTGCTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCTGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 1232724-1237738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028926.1 Pasteurella multocida strain 20N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1232724 28 100.0 32 ............................ TTACTTGCCAAAGCTTGCGGGGTAAGTCAGCC 1232784 28 100.0 32 ............................ TGCTTTGATTGCTTTTATAACAAAAATTATTG 1232844 28 100.0 32 ............................ AATGCTTAAACCAAGCTTTCCAGACAATAATT 1232904 28 100.0 32 ............................ AATAACCAACTGAAGACCAGAGTTCCTTTGAG 1232964 28 100.0 32 ............................ AACTGAGAAGATAAAAGATAATCACCGTAGCT 1233024 28 100.0 32 ............................ GAGACAATTTAGATCTATTTTACTCATTAATG 1233084 28 100.0 32 ............................ TTTTGCGAGCCACTCCCCGAATTTATAACCCG 1233144 28 100.0 32 ............................ ACAATCAATCCAGTTCAGCATTGACGGTTACA 1233204 28 100.0 32 ............................ TGCTGATTGATGATGTATTGAAAAATCCGAAA 1233264 28 100.0 32 ............................ TAAATTTGAGGAATTGCACAATGATTAAGCAA 1233324 28 100.0 32 ............................ CGTTGCCCAGTTCACTTGTTGCCATATCTAGC 1233384 28 100.0 32 ............................ AGCATGGTTGCGTGTGCGGCGTTGTTGATTCT 1233444 28 100.0 32 ............................ CAAGAGGTTTAAACTTTTCTAGCACTGGTGCC 1233504 28 100.0 33 ............................ CAGTCATTTTATGATGAACGGGGGAAACATTTT 1233565 28 100.0 32 ............................ GTCAAGTCGAAGAACAACGCCACGCCCGCTTT 1233625 28 100.0 32 ............................ CACGTCGTACCGCCAGCAATTCTGTTGAGCGG 1233685 28 100.0 32 ............................ TTTGGTACTTGGGCTAAGCGTGATTATTTCCC 1233745 28 100.0 32 ............................ AGTTTGTCTATTCATTAGTTCGGTGTTCCTGT 1233805 28 100.0 32 ............................ AAGTGCCGTTGTCTTGCAACTTCAACTGATAA 1233865 28 100.0 32 ............................ GTGTAGATATTCTTCAGACATAGATATCGCCT 1233925 28 100.0 33 ............................ CGTTAAAAATACTGCTAAAAATATTTCCAACGC 1233986 28 100.0 32 ............................ TTCTTTCATCGTTTCATATAACGTTTCAAGTG 1234046 28 100.0 32 ............................ GTGTGATTAATGATAACCCCCGTTTTCTCTGT 1234106 28 100.0 33 ............................ ATTGATGAAATCACCGCGACCGCAGATATAATT 1234167 28 100.0 32 ............................ ATACTAAAGAATCAATTTCACTGTGTTTTGCG 1234227 28 100.0 32 ............................ TAGACGTTTTGAAACCTCAATAAATGTCGATT 1234287 28 100.0 32 ............................ TTTGATTATTATATGGTACCATATAAACAACT 1234347 28 100.0 32 ............................ AGCGTGCAATATTTTTGTAAGTTGAAAGCCAT 1234407 28 100.0 32 ............................ ATGCAACAAAGCGCATCTGTGCGACGAACAAC 1234467 28 100.0 32 ............................ GTGTTAGTGAAGAAGGTTGTGTGCATGACTTT 1234527 28 100.0 32 ............................ CAATTTTCGGCACTAAAACTTTATTGACTGCG 1234587 28 100.0 32 ............................ TCATTCTGTTTTTGGTGGCCGTGGAAGTGATT 1234647 28 100.0 32 ............................ ATTTCCGGTGTAACATGCGAGATGTCATTTTT 1234707 28 100.0 32 ............................ GCCGGAAAGCGCGCGCACAGACCTACAATTAG 1234767 28 100.0 32 ............................ CGCAAGGATTTTTAAAATGCGACGGGTCAACA 1234827 28 100.0 32 ............................ CTCCCGGATAACGGAAAAGATGAAGAAAGATA 1234887 28 100.0 32 ............................ TCCAGACTTCTGTCCGTTTGGAGTTACTATGT 1234947 28 100.0 32 ............................ CGCGACCTCAAGAGAATATTTATCAACATAAA 1235007 28 100.0 32 ............................ GTCTGTCTTGCGCCCCGTAATGCCTTTTTCTG 1235067 28 100.0 32 ............................ TGTTTAACTTGCTTCACTGTAATATTAGTTGA 1235127 28 100.0 32 ............................ CTCGCCCCTTGGTAGATCGTGCGGCAGATAGT 1235187 28 100.0 33 ............................ TAAATATCCCATGATTGTTACTTCATTTACGCT 1235248 28 100.0 32 ............................ TATTTTATAGGTTCTTCTATCTTTGGCGTTAT 1235308 28 100.0 32 ............................ TTTTTTTAGATATTGGCTAATAATATCTGCTA 1235368 28 100.0 32 ............................ TGAAGAGGTAAGACATGAAATATCAATGGAAT 1235428 28 100.0 32 ............................ TGGGCGTTTGGCTTGTTCGGCGGTGCAACGGA 1235488 28 100.0 32 ............................ AATTTCTGCTCTTAATTGCATTATAGATTCAT 1235548 28 100.0 32 ............................ AACTCGCGATGATGTTACGCGACAAACAATAC 1235608 28 100.0 32 ............................ AATGAAAGAGAAAAGATTGACTTTCAGATAAG 1235668 28 100.0 32 ............................ TTGCTGCTTGAAGTGAGCATAACAATGTTATC 1235728 28 100.0 32 ............................ AATTACATATCCAGAAGAAAATAAAAGATGCT 1235788 28 100.0 32 ............................ GTAGACTAAAAACAGATACATACCTTTACCAT 1235848 28 100.0 32 ............................ TCCGCAAAGGGCTTGGTAAAGATTCTGATTAC 1235908 28 100.0 32 ............................ GGCACATCAGACTCTATCCCCGCGCGACTGTC 1235968 28 100.0 32 ............................ TGAGTATGACTCTTTATGCGGGAAATCTTCGA 1236028 28 100.0 32 ............................ AAAGGCGGTCAAGACGTTAAAAGGATTTATCG 1236088 28 100.0 32 ............................ ACAAAAAACAGGCGGGCAAGTGTTCGCGCTTG 1236148 28 100.0 32 ............................ ACTTTGCCTTTTAATTGACTTGTTCTCTTTCC 1236208 28 100.0 32 ............................ GCCGTGTTCACGGGAATAATGCCGCTTAGTCC 1236268 28 100.0 33 ............................ ATTTCCAAGTGCTGTATTAGCTTATCACTACCC 1236329 28 100.0 32 ............................ TTTTAATAATTCTGGCGTTCTCAAATCATCAC 1236389 28 100.0 32 ............................ TTGTTATTTTGATCCACTTCCTCGCCTGTGCC 1236449 28 100.0 32 ............................ TCACCGAATTCGTCAAGCATGTCAGCGTTGTG 1236509 28 100.0 32 ............................ TGCAAGTTCGGGGAACTGTTGTTCTATTGCTC 1236569 28 100.0 32 ............................ ACACGTTGTGGGTGAGCGTAGTACGTTGGAAA 1236629 28 100.0 32 ............................ GTCGCTTGAGATGATCGAATTAAACAAAGATG 1236689 28 100.0 32 ............................ ACTGTCGCCTGCCATTGCTCTCTTATATGCAA 1236749 28 100.0 32 ............................ TGACAACTAAAGCCTTTTAAAATGGCATCCGT 1236809 28 100.0 32 ............................ ATAACACCCTCACCGCATTTCGTCCACGTGTC 1236869 28 100.0 32 ............................ CGAGACCGTAAATCCCGAGCAACACACAAAGA 1236929 28 100.0 32 ............................ GCTCACCATTTAACTTTATTAAAAGCAGCTTA 1236989 28 100.0 32 ............................ ATGGGTAGAGCCACAGTACACCATCACGGTGA 1237049 28 100.0 33 ............................ ATAACCACTGTCAACATTTGGTACAGCGGAATA 1237110 28 100.0 33 ............................ GTTTTCTGCGGTTTTTTCTTCCGCTTTTGGCTC 1237171 28 100.0 32 ............................ CATTTTGGTTGCCACTGAAAGAACCACCGCCT 1237231 28 100.0 32 ............................ ACCGAATATTAAAACCCAACTCGCGATGATGT 1237291 28 100.0 32 ............................ AAAATCAAAAAATTCAATCTTTTATAAAGAAA 1237351 28 100.0 32 ............................ TGCCAAAATTCGTAGATGGCGCAGAGATATTG 1237411 28 100.0 32 ............................ GCGAGACAAATAACGTGATGATTGCTCGATAT 1237471 28 100.0 32 ............................ TCTTGCTTCGCTCTCTAATCGACTAATTTCGA 1237531 28 100.0 32 ............................ ATGACTAATGCCATAAGCTGTTACATACTCAA 1237591 28 100.0 32 ............................ TCTTAAGTCTTTGTCATCTTCGATATTAATCA 1237651 28 100.0 32 ............................ AAATTGTAATTTATCTAATAAATATGATAGCT 1237711 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 84 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCGCGTATTATTGAAGGCTTAGCCCCTCGTACCAAAGCCCCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCACAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAACACACCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : AATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCACTGCCATGTAAGCAGTGTCAATTGACTGTTGGTATATTACTAAAACTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //