Array 1 283558-283410 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026704.1 Providencia stuartii strain AR_0026 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 283557 28 100.0 32 ............................ ATATGCGCATCCCAAGCTTCTGGGGGGCATGT 283497 28 100.0 32 ............................ GCGTTTAGGCAGCATCATTTTGCCGTCAGCAT 283437 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TACAAGCCGCCAATATCGCCAATTATTATGGCGTTATCAGATAAAGCAAAGTTTATCTCGGCGAGGTAATTGCTGGGATAATGCGCCGATGGAGCGATTTTTTCGAAGTTTAAAGACAGAATGGGTACCCATTTTAGGCTACCGTAATTCCATAGAAGCACAGCAAGAAATAACACGATATATCATCGGGTATTATAGTCAGCTTAGACCCCATCAATATAACGGTGGCTTAACACCCAATGAATCAGAACGATTGTATTGGGAAAACTCTAAAACGGTGACCAATTTTTGTTGACCACTCCAAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : TGATAAATGATTATCCTGTGCGCTTTCCAATAAGCTGTACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAATAATAAAATTAATCGGTGAGGCAGGATGAAGCTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGAAGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGTGAGATGATAGGCTGTTA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3157730-3158135 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026704.1 Providencia stuartii strain AR_0026 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 3157730 28 100.0 32 ............................ ATTAAACAGCACCCGAATTCCATCTGCATCAA 3157790 28 100.0 32 ............................ TGCAAACATGGCATTTATCATTGTCATCTTTT 3157850 28 100.0 32 ............................ TCTACGATGCGTACTGGTAAGACTGCTAGTGC 3157910 28 100.0 33 ............................ ATCATCACGAATACACCAGGCTATCGAGTAAGG 3157971 28 100.0 32 ............................ CAGAGCAAGCGAAAGCTAAAGAAGTTTATGAC 3158031 28 96.4 49 ..............G............. TAAGACGCGGGTTCAACTCCCGCCAGCGCAGTAATAAAGGGAAAATAAA 3158108 28 67.9 0 AC....ATTG.......A..A.....C. | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 94.9 35 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGTTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAACTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGTTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGCGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : ATAAGGCCAACGGCTTAGAAGGCCGTAGGTCACATACATAAACGTATAGGCAGTTATCCATTTATTAATATAGATTAAATAAACAAGTATTAACATGTACGTTTAAATACAATTAATAAGTTATTTTTGATAAAACGCTTTGCGATCAGCTTCCCAAAATCACCATGTACTCTTTACAAACAATGAACAGCTATAGACAACACTTAAGTTAAACTGTATTTAAATAGTCATATGATTTAACCAAGTCAATGGAAGGCTAATTCAACATGGATGACTTTTCTCCCGCTGATTTAAAAACTATCCTTCATTCCAAGCGCGCTAATATGTACTATTTAGAGCATTGCCGCGTTATGCAAAAAGATGGTCGAGTTCTCTACTTCACCGAAGCGAAAAATGAAAACCTCTATTTCAATATTCCCATTGCGAATACAACAGTTTTGCTATTAGGCACTGGCACCTCTATTACTCAAGCTGCGATGAGAATGCTTTCACAGGCTGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3167974-3168542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026704.1 Providencia stuartii strain AR_0026 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3167974 28 100.0 32 ............................ TGACAAAGATTATTTTTTCAAGCCTTCATTTG 3168034 28 100.0 33 ............................ ATCACGGAAGTGATTGACGCAAAGTTACGCTAC 3168095 28 100.0 32 ............................ ACGATTTACATATAGTGATATCCGTCTAACAT 3168155 28 100.0 32 ............................ GTCCGCATTTGCTATTGGAGTGTCATCAAGAA 3168215 28 100.0 32 ............................ TTTAGTTGACCATTTCGAATATTGCATAAAGT 3168275 28 100.0 32 ............................ TTAATAATAGGAGCTCTATCTAGCCATTGCCA 3168335 28 100.0 32 ............................ CAGAGATATACCTGTTCCGCTCCCGTAAATGC 3168395 28 100.0 32 ............................ TTGCTGAACCTCTTCATGCACTGAGTCTCGCC 3168455 28 96.4 32 ...........T................ GTTGTTGTTCGTGTTGAACAAGGCGAAACCGA 3168515 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAACTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGGCTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AAATGAAACATCTACTTGATTTTATAATATTTTTCAAGGTGACCATTTTGGCTTGTTCTATAAAATACAAAGGTAGCTTCTAATTCTTTATTTTCGTCCAAAGTCACCGCTAATAGAGGCGAGGATTTATCAATCGGCTTTGTAAATACAACTGGTTTATATGAGACACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGCTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTTAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTGTGCGTTGCGGCTTCTTTTCCGTCAGTTAGATGGCCCATTATCCGGAGGAGCGCCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTGTATTATCAACGATAGCCCTTGGTCAACCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3242121-3242688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026704.1 Providencia stuartii strain AR_0026 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3242121 28 100.0 32 ............................ ATTAAACAAGGCATCAATAGCCATTTGCTCAT 3242181 28 100.0 32 ............................ TGACTTCGGGGCGATGTGATCATGGTGCGAGT 3242241 28 100.0 32 ............................ TTAAAGCAGGTGCGCGCTTCTATTTTCGCGCT 3242301 28 100.0 32 ............................ ACTTAGCTCAGGAATTAGTAGTATTTATGTCA 3242361 28 100.0 32 ............................ ACTTAGCTCAGGAATTAGTAGTATTTATGTCA 3242421 28 100.0 32 ............................ TATTGCCATGCCAGCTGACGCACCACCAAGAC 3242481 28 100.0 32 ............................ ATACAAACAAGGCTCACAACCTGCCTCAACTG 3242541 28 100.0 32 ............................ TCTATAAACACGTTTTGGATAGCAATTATCTT 3242601 28 100.0 32 ............................ TGTGTGAGGTTGATTTACTGGTGCTTGATGAC 3242661 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGCTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAATTGCGTAATATGTAGGTCAGGCAGGGCGCTGTATAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGTGCTGAATAAAAAGTGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAATCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTTACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : ATACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTCAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACATGGAGGTTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //