Array 1 74866-74171 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQL01000008.1 Dielma fastidiosa strain AF31-27BH AF31-27BH.Scaf8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74865 36 100.0 29 .................................... TAACCATCAGCACTAATAGTAAAGGTATC 74800 36 100.0 30 .................................... GCCCGGAATTGTCACAAGAGCAAATTAATG 74734 36 100.0 30 .................................... CTTTTAATTCATTTAGTAATTCTTCAGGTT 74668 36 100.0 30 .................................... TAGGCAGGCAACTATGGCAATCTATGTAAT 74602 36 100.0 30 .................................... AGAAATATTTGAATAAAAAGGCAATGGATA 74536 36 100.0 30 .................................... TTATAGGCTGCGTTGATAATGATGCCACTC 74470 36 100.0 30 .................................... TCAGAAACATGCTCTGCATTAGGCTTAACG 74404 36 100.0 30 .................................... TAACTTTTTTACTGAAATATGATAGAATAA 74338 36 100.0 30 .................................... GCACTTTAAATGTACCATTAGAGGTAAATA 74272 36 97.2 30 ............................T....... CATAGTTAAATAGCTTGTTAACAAAATTGC 74206 36 91.7 0 ..............................C..A.T | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 30 AATAGTGATTCTAGTAAAATGTATTTGTGCTTAGAC # Left flank : CTTCATTCCTTAGATATTAAAAGAGATAGCTTTTTAATTATTCGAGATTTCAAACAGGGATTAGATTTATCACAACAATTATATATTTTGGATAAGATGATGAGGAATGAAAAAGTGCATGTTGTATTATTTCTTAATGATGCAGAATTTTATTATTATACAAAAAATTTGATTTCTCATTTATTTGTAACAGATTATAAAATTGATTGCGTTTTTAATAATGAAATAATTGAGAATTGTGAAGAAAAAATTTTGTATAAAGATTTTTTGGATCGTGATGAATATCATAATGTTATTAAAGTTCTAGAAAAACAGCATATGTTTCTTAAATACAATGAATTGTTATCTGAACGAGCTGATTTTATAAATTATTTTTTTGAGAAATACAACATAAATGATGTGATATAATCAGAAAAGGGTAAAATTATAAGAAATATTACATGATGAATGTAAGAAAAGTTAGTAAAATACGTCTGAAATGAAGTAAAATCTTGCTATCT # Right flank : AATGTTATTAATTGCATTTCAAAATTGCATTTCAAAATTATTGCTTTCAGCCTCACACTTCCTTGACACCCCTCATATAATATGTTATAACACAGTTAACTCTTTGCACTGCATTACATTCTATTGAATGCGAGATCAACAGTACAAACTGAGCAGGCGATGAACCTTTAAGGTCATGGGGCCGGGCTGCTGAGGCGGCAACAGATGTTAACTTAGCATCTGTGGGACAGTTGTATGTTCCACAGATGTTTTTTTTAACCATTTGCGGAATTCATTCTCAATGAAGTGCCATAAGAGACAAGACATTTTCGTACATTTATGACGAAATTAGGAGGACTCTTTTATGACAACAGAAAACAAAACGCCATGTGAAATGGCAATCAGCACCGCTGACAAGAATGAAGCGGTAATTATTCGCAAACTGTCAATGGTAAGTTTAATTGGCAACACCGCATTATCCGGTTTTAAAATGTTCGCGGGCATCGCAGGCAACTCAGGAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGTGATTCTAGTAAAATGTATTTGTGCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 468045-468484 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQL01000001.1 Dielma fastidiosa strain AF31-27BH AF31-27BH.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 468045 33 93.9 33 .........T...G................... ATTCATTGCAACGATGTCAGTCACTTGCACTTA 468111 33 93.9 36 .........T...G................... TTTGTAGAGTTTGGCATCTGTATCATTCAACGCTTT 468180 33 97.0 35 ..........T...................... ATCCCAATTGGTTATCAATAGATATCCAATCGCTA 468248 33 100.0 35 ................................. CCATCACAGCTGCTGGGATGCAAAGAATCGGCATG 468316 33 100.0 35 ................................. ACTATGTAAAGGAGGCGTAAATTGATGAATAATGA 468384 33 97.0 35 .............G................... GGAACGGTTTGTCGGAAATTCAGCCGCTGGTTTGA 468452 33 75.8 0 ...........T.G......T.......ATTTG | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 93.9 35 GTCGAGAGTCGCAAGACTCTCGTGGATTGAAAT # Left flank : CAATTCATCTGCTTCAGTCAAAGGGCGTACTCTACGCGCCAGGTAAGGCAAGCAATGCCGGCGGTGTTGCCTGTTCAGGTTTAGAAATGTCACAAAATTCAATGCGTTACAGCTGGACCTTTGAAGAAGTTGATGACAAGCTTAAATCAATCATGACTTCAATCTTTAAGACAGTCGATGAGACAGCCCGTGAATTTGGCGCTGAAGGTAATTATGTTGCTGGTGCAAATATTGCTGGTTTCGTAAAGGTTGCGGAAGCCATGCAGGCACAAGGTATCGTATAATATTCAATGTAAGACATGTGAAAGCATGTCTTTAAAAAAATCAATAAGTGCGAATGTGAAGTGAACATGAATTTCCTGGGGGATTCGCACTTAAAATAGAGATGAAACATTCAGAAAGAATGAATATTTAAGATCGTTTTGATTCTTTGAAATTGAAAGCTTAAAGAAAAAGCTTCTTTTTTAGTATAATTATTACTAATTTGGTAATATTTTGCT # Right flank : GAATCAAAAGTATAAAATAAAACATCATCATTCAAAATAAAAATACATTCACCTTGATGTATTTTTATTTTCTATTATCTTCATTGGCCAAAGTTCAAATATGCGAAAGTATGTGTTTATACAAGAAACCATTGACCTTCTTATATGTGAATCATATAATATGTAATATACATATAAAGGAGGTTAATTATGGATTTTTTATCCTATCATACAATGATTGAAACATTAAGCCGTCAAATCAATGAATCTCAGCAAGAATTATTAAATCCTTATCTAGGAAAATACAACCTGACTTTTCTACAATTTCAATTATTACGCCAAGTTCAGCAAGTTCGACAAATTACCGTGGGAAAGCTTGCTAAAGTCATGGCATTGGATGCTGGCAATGTATCCGCCTATTGTAAAAAATTAGAACAGAAGGCATTGCTGAAGAAGGTTCGCAGTATCAATGATGAGCGTGTCGTTCAGCTGGCCTTGACCGAGAAAAGTGCTGCTATCAT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAGTCGCAAGACTCTCGTGGATTGAAAT # Alternate repeat : GTCGAGAGTTGCAGGACTCTCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 472007-471701 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQL01000001.1 Dielma fastidiosa strain AF31-27BH AF31-27BH.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 472006 33 100.0 34 ................................. ACATATAACTTCAACAATCGCTTCCGTGCTTGTT 471939 33 100.0 35 ................................. GGTGTAACTCAGGACAAGATACAAGGGCTATCGTT 471871 33 100.0 36 ................................. CAATCCATCTGCTATTTTACCAAGATTATCACTATC 471802 33 100.0 34 ................................. TTGACCGCATTATTTGTCTGACTAACTGCTGTAT 471735 33 90.9 0 ................A...C.......T.... | C,A [471704,471708] ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.2 35 GTCGAGAGTCGCAGGACTCTTGTGGATTGAAAT # Left flank : CATTTAAGGAAGAATGTAAAAAGAGTGATGAATTATCGGAGGAAATTTGTGATGGGGACCTTTCTTGTGAATTTGAAACAGTAGCATCAAAATTTAAAGTGATTGATGAAGATACAGTCACTGTTCTAGCCGATAAAAAGCTTGCAGAAAAAATACGATCAGGTAAATTTGTTTCAGCAATGGAACTTCAAATGGGTAGCGTTAATATGAGAAGAAGTGTTCAGAAGAAATTAGGACTGCGGGATGATGACATAATGTTTTTATCGGATAAGCAGTATGATAATTTTATTGGCTACATGAAAAGCTTAGTTTGATATTATTAAGTTATTGAGTGCGAATGTGAAGTGAACATGAATTTCCTGGGGGATTCGCACTTAAAATCGAGATGAAACATTCAAAAAGAATGAATATTTAAGATTGTTTTGAGTCTTTGAAATTGAAAGCTTAAAGAAAAAGCTTCTTTTTTAGTAAAATTATTACTAATTTGGTAATATTTTGCT # Right flank : ACAACAAAAAAATACATCAGCACAGATGTATTTTCTTTATGGTATGTCAAGCAGTGCATAAATCTTGGTGGTGCAAGTCCACTATGGGGCTTGCAACGCAATCGTCAACTATTGGCCGTAAATGTGGCGGATATATGGAGAGAAAGATACATAACCTTATCTCGGGAGGTATTGTCAGCGAAAATTAGGGATACTCTCGTAGTAACAACGAATGGCAAGAAGCATAGTAAGTAAGCCGAATGTTATAAAATACCTAGGCTTTTTTCTACAAGGATAACCAGATACAAAGTTACAAAGTAAGACTATATGAAATATTCATTGCAAAACCAAAAGAGAAACTGAAACAACGTACATTAAGAAGCTGTTGAGTATAGATTATTGTTTATTAATGATAAAAACAGTTAATTACAGGAAGATAAACTATTGGTAAAATTAGGGGTAGAATTTCACAAAGTACAATCATGGGCATACTCAAGAAAGATTTACACAAGATGTGTAAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAGTCGCAGGACTCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 710587-710016 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQL01000001.1 Dielma fastidiosa strain AF31-27BH AF31-27BH.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 710586 33 100.0 34 ................................. TCACCAATGGCGCTTTGTTGTACAGCTAATTGCT 710519 33 100.0 34 ................................. AGTATAAACGTTTGGCAAAAGGTGCTAAATCAAA 710452 33 100.0 34 ................................. AAAACAGAAACAGTTTTATAATCATTGATCACTG 710385 33 100.0 34 ................................. ATCTAACAAGCCATTAAAGTTATCCTCATCATAG 710318 33 100.0 33 ................................. AATTGTTTTAGGCGGCGACCATAGGATTATGTT 710252 33 97.0 35 ...................A............. GTTGAATAAGTTTAAATTTAGCGGTAGCACCTGAC 710184 33 97.0 34 ...................A............. ATAAGACGGATAACGAAATATCTTATTTAAACCA 710117 33 97.0 36 ...............A................. AGCAACTCAGCGATACAAATGGATACAAAGGGGCAG 710048 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 98.7 34 GTCAAGAGTCGTATGGCTCTTGTGGATTGAAAT # Left flank : TCCCAATGATCCAAATTGCTGGGCAAGTTTGGTGAGTCCTGGCAAAATCATCCTGATGCTTCTTCTGATGATTAGTTCTTTAGTATTTGGTTAAACTTTTGATATTTTTGAAGATAAAAAGTATATCCCTGTATTACGGGTTTACGTCATTACAGAGCTGTATGGCTCTCTATTTTGATGGGCTTCATATCTGTGCAGCTAGTAGAATGCATAAGCGTTATAATTTACTGAATTCACCCTATCTTTATGAAGATTCAGTTTCTGATTCATTCAAAGTTTTAGGATGTGTTATAATATAAATATATGTGGGAGTTAACTTAAATGAATGGAGTGCGAATGTGAAGCAAACATGAAATCCATGGGGGATTCGCACTAATAATTAACGAATAATAGTGAAAGTAAAGAGGGTTTATAACTAAAAATAAAGAGTATGAATGTGATTTAATGATAAATTTGTTGGTTTATTGGTAATATTATTACTTTTTATGTATAATTTTGCT # Right flank : TGTTATTATGATGGTAATGAGTACCACGTATTCAGTCAAGAGTCACAAGACTCTTTTTAATTTGTTTTTATATTTTTTAGGAAAAATATACCAATTTTGTAAATATGTTGAACTATCCTGAATATAAGCATTAAAATAGAAACGGTATCCCTGCTGGCTGAGCAGTCTATGCGCAGGGTTTGCACTTCTTTGTATATGTTTGTACTTTTTGATTGACCTTTTATCAAAAAAAGCTGGGGAAATATGTTTTTCCTATTTTTAAGTCACTTGAATTATGTTATTATATTATAGAATGAAAGTAATAATAGTTAGGGGGCTTCCTAAGATATGTCGGATAAGCAAATTTATGCATCAGTCGAAATTGCCGATCATGAAGTTCGACTTGTTGTCGGCGAGTTTTATGAAACTCGTTTTAATATCCTGCGCGTAGAGAAGGTCCGTTTTAATGGTGTTGAAGATAGTATCATTGTGAATGAAAGCAACGTTGTAACAGCTTTGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAGAGTCGTATGGCTCTTGTGGATTGAAAT # Alternate repeat : GTCAAGAGTCGTATGGCTCATGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //