Array 1 110921-110588 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBEW02000007.1 Criibacterium bergeronii strain CCRI-22567 CCRI-22567_NODE_7_length_110920_cov_254.152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110920 28 100.0 33 ............................ TGGTATAAGCGGAATCTTTGACCAGTTATATCC 110859 28 100.0 33 ............................ TATCATCAAGTTTTATCAATTGCCCTACTGATT 110798 28 100.0 33 ............................ TCTAAAACTTTTGTGCAGAAATGAAATCCCCTA 110737 28 100.0 33 ............................ CAAGCAAATCAGAATCTACATTTAATGTATTTG 110676 28 100.0 33 ............................ TAAAGTCAAGAAATTTCTCAAAGAGCAAAATTG 110615 27 89.3 0 .....................T...-.T | T [110593] ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 ATTTTTCCCGCACACGCGGGGGTGATCC # Left flank : | # Right flank : TTTTATTAATGATTAGCTTTACTTGTTTGCAAGTTTTTTTAAAATTAAATTCCAATAAATCGATTGAAAAATACAAATTAATTAAGTATAATAAAACATATAAAGTAAAGGCTATGTTTGTTAATTTTAAATCTATTTTATCAAAATATATCGTCAAAATTGCGTCAAATCGTTTTTTGCTATGAAAACATTTTTTTAAAAAAAAATTTGCAATTAGACGATTTTTTTATTTGTTAATGGTAATATGGCTGTGGCAAGTAAATAAAAGTAAATAGATTTAAAAAAATATAAAATTTAAAATTATTTGATGTATAACGCATCAAAGAGGAGGAAAAATGGCAAAATTAGTTGAATGTGTACCTAATTTCAGCGAAGGTAGAGACCAAGATAAAGTTGAAAAAATAGTTGATGAAGTAAGAAAAGTTAAAGAAGTTAAATTACTTGACTATTCTTCTGACCAAGACCACAACAGAACAGTTGTTACTATGATAGGACAACCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1372-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBEW02000008.1 Criibacterium bergeronii strain CCRI-22567 CCRI-22567_NODE_8_length_80728_cov_197.112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1371 28 96.4 33 G........................... TGAAGCTAAAAGTGAAATAAATGATGTAATTGA 1310 28 96.4 33 G........................... TTATCAATACAATCCTGCATGTGATATGCTTTG 1249 28 96.4 33 G........................... TAAAAGCGAGTACAAAGTGGAATTCAAAAAACA 1188 28 96.4 33 G........................... TTGTTTTACCTTGCCCCCAAAGCCCGAAATAAC 1127 28 96.4 33 G........................... TCTATATATACTTCTTCAAAAGTTCCGTATACG 1066 28 96.4 33 G........................... CTGTTTTTTCATTTTCTTTACCTCTCTTTTAAA 1005 28 96.4 33 G........................... CCGAAAGGAATACCATCAAATCCGAATTCAAAT 944 28 96.4 33 G........................... CATAATATTCAACAGCTTCCAACTGTTCTTTTG 883 28 96.4 33 G........................... TGATGAATGGTCAATCGGTGAAAGAGCAGCAAG 822 28 100.0 33 ............................ CGGGTTTAATATCATCAAGTTTTATCAATTGCC 761 28 100.0 33 ............................ CAGTCCAACAGTTGAAATTAAAATTACAAGAGA 700 28 100.0 33 ............................ TATTCAGAACTGCAAGAACGATATTTAAAACAA 639 28 100.0 33 ............................ TATGACACTTGAAATTGAACCAGTAATGATAGT 578 28 100.0 33 ............................ TAATGAATATTGAAAAAAATATAGTAAACATAG 517 28 100.0 33 ............................ TGAGCGAAGCGAACTAGCCATTGACTAACTCAA 456 28 100.0 33 ............................ TGTAAAATTATTCATATTAATAGCTCCTTTGTA 395 28 100.0 33 ............................ TGGTATAAGCGGAATCTTTGACCAGTTATATCC 334 28 100.0 33 ............................ TAGAAAAGGAAACGGTAAACGTATTTTATACTC 273 28 100.0 33 ............................ TGCTTCACACTGCCAAGACAAAAGAGTACCTTG 212 28 100.0 33 ............................ TGTACTTTCTAGCATTTCATCAACTGGAATTGT 151 28 100.0 33 ............................ TAGTTTTGGTGCTGAATTAAGAAGTAATTTTCA 90 28 100.0 33 ............................ TGTAAAATTATTCATATTAATAGCTCCTTTGTA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.6 33 ATTTTTCCCGCACACGCGGGGGTGATCC # Left flank : AATTCAATTATAGAAATAGGAGCTGTAAAAGTAGATTATACAGATGGAACAATAATTTCTGAATTTCAAAAATTAATAGCATATAACAAAGCAATTCCAGAAGAAATAAAAAAATTGACAGGCATTGATGATAATTTACTTTGTGAATATGGGGAAAATATTAATTCAGTTTTAACCGAATTTTTAGAATATCTAGGTCAAGATGATTTAGTGGGATATAATATAGATTTTGATTTAAAATTTTTAAATCATTTATTAAAACTAAATGGAATTGAAGAAATTAAAAACAATAGACATGACATTATCAAATATATAAAAAAAGACAAAATGTTTTTAGAAAATTATAAGCTACAAACAGTAATGCAAAGTTATGGTATAAATAAAAAACAGAAACACAGAGCTATTGATGACGCAAAAATTACTTTTGAGATTTCTAAAAAATTAAATAAATTTTTAGAAAAAGTTAAATAAGAATGCTTAAATATTAAGAATCTATTAGT # Right flank : CT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : TTTTTCCCGCACACGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //