Array 1 1472880-1472303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1472879 29 100.0 32 ............................. CGGAAGTTGCCGGGCAGGGACGACGCCAGGAC 1472818 29 100.0 32 ............................. CTTCGCGACATCGGGTTCCCCTTCCAGTGGCT 1472757 29 100.0 32 ............................. AGATCGCAGATCAACAGGGTCGGCACCTGGTA 1472696 29 100.0 32 ............................. CAGAGGAGATCCCCGATCACCTCGTCCGCGAT 1472635 29 96.6 32 ..............C.............. CATGCCGAGGCCGCTGTGGAGCGGGGCGATCA 1472574 29 93.1 32 ...T..........C.............. TGATTGCGATGGTGTGAACCATGGGAACGACC 1472513 29 96.6 32 ..............C.............. CTCATCCATCCGGCGACGCTGCCCAGGTCCGC 1472452 29 100.0 32 ............................. GGTTCACTGCCACGGCCCCAGTGCCCCGCGGT 1472391 29 96.6 32 .............A............... GAGCTGTGGCAGTCGGAGAAGTCGCTGCTGGA 1472330 28 86.2 0 ........A............CC-..... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTCCGGCCCGAGCGTGCGGGGGATGACCG # Left flank : GCCGCGTACGGCAGAAGGCCGGACTCAACCGCGCCATCCTCGACACCTCACCCGGCGAGCTGCGCCGTCAACTCACCTACAAAGCTTCCTGGTACGGATCCAAACTGCTGGTCCTCGACCGGTGGTACCCCTCCAGCAAGACCTGCTCCGCATGCGGCTGGCAAAACCCACGCCTCACCCTCGCGGACAGGACGTTCCATTGCGGCAACTGCCACCTCGTGATCGACCGGGACCTCAACGCGGCCCGGAATATCGCGCAGCAGACACACGGCGCGCCGCACCACCCCGTCGCCCCTGGTAAAGGGGAGACACAAAACGCCCGCCGAGCCACCGGAAGACCGCCCAGCCCACGGGCCGGACGGCAGGAGGCGCAGAAACGGGAAGACACCGGCCCACCCCGGTCGGTGCCACCTCAGCGGAGCGATCCGCTGACATCCCCACCACCCGGGTCGCCTGGTCAAGAATCAGCAAAGTCGCTCTAACGCTGAAGGTCAGGAAGA # Right flank : GATCTGTACGTCGGCGGCGTTCTCCTGATCGGTCCTCCGAGCGTGCAGAGGAGGGGCGTGTAGGAGTTCTGCTGATGCTGGGCTCGGGTTCTGGACTCTCCGTTCCTAGAGGCACAGGTGTCGTGGCCTACCCTGAGCCGGTGATCGAGCCGTCGCTGCCACCAGCTGACCCATCGGGGCTCTACCTGCGCATCTCGTACACCGATGCGCTCTCCGGCTTGCCTGATGCGGACACTCTGGAGAGGTGGGAGGTTGCCGTTCTGCACGCGCGCCCCGGCAGCGACGATGTCGCTGTCGGGGCCATGGTCTTCTACTGGGTCCACCTGGATCGCGGGGTGAACGCCGTACTCGCGATGGAGGACGAGTCCGAGGACCTTGCGGAGATCGCCACCGCGATCCTCGACGCGGGGACCGGATACTTCACCGACGAGGTCAGCGCGACGCTGGACTACGTGGGGTCGGCCTTGCTCGTCATGGACCGGGTGACCCTCGACCAGCAG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGCCCGAGCGTGCGGGGGATGACCG # Alternate repeat : GTCCGGCCCGAGCGCGCGGGGGATGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1487344-1486401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1487343 29 100.0 32 ............................. GAGCATCAACGCGCGGACTTATGGCGTCATAA 1487282 29 100.0 32 ............................. CCAAGAGGGAAAGGCGCGAAAAAGACGAGCCC 1487221 29 100.0 32 ............................. CGCTGACCCGCCTCACCCTGCACCCTCCCCGC 1487160 29 100.0 32 ............................. CGGCCGCAGGTCTGCCGGTGCGGCACCCACAC 1487099 29 100.0 32 ............................. GAGATTGAGCAGATCCAGGCCCGCAGCTTCGA 1487038 29 100.0 32 ............................. GTGCTATCCGGGTTGGGGCATGACCGGTCGTT 1486977 29 100.0 32 ............................. GTCGCGGCCGGTCCTCAGATGGATGCCGTGGC 1486916 29 100.0 32 ............................. GCTCCGCTTCCCCCAGGACTCGAACGACCTGA 1486855 29 100.0 32 ............................. GCTCGGCCTCGCGCAGGCCACCGAGATGACGT 1486794 29 100.0 32 ............................. ATCCGCATCATGGAGAAGAACCCCCTGGAGGA 1486733 29 100.0 32 ............................. GCACGAACTCGCCATCGACCACCGCGCCAGCA 1486672 29 100.0 32 ............................. GCACAGAGCGAGGCCCAGGACCGGGTAGAGCG 1486611 29 100.0 32 ............................. CGGTGAGGGTTTTGGCGCCGGGCAGGCCCGGC 1486550 29 100.0 32 ............................. CCGCCTGGCACCACAAGTGGGAGTCGGCCGTC 1486489 29 100.0 31 ............................. TGGTCCTTACCCGCCGGGCGGGTGGTGCGCG 1486429 29 75.9 0 .T.T..........C..C.....C.C..C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GCCCGGCCCGTACGTGCAGGGGATGACCG # Left flank : ACGCCGCGTCCGGCAGAAGGCCGGACTCAACCGCGCCATCCTCGACGCCTCACCCGGCGAGCTGCGCCGTCAACTCACCTACAAAGCTTCCTGGTACGGATCCAAACTGCTGGTCCTCGACCGGTGGTACCCCTCCAGCAAGACCTGTTCCGCCTGCGGCTGGCAAAACCCACGCCTCACCCTCGCCAACAGGACGTTCCACTGCGCCAACTGTCACCTTGCGATCGACCGGGACCTCAACGCGGCCCGCAACATCGCGCAGCAGACACACGGCGCACCGCACCACCCCGTCCCCCCTGGTAGAGGGGACGCTAAACGCCCGCCGAGCCACCGGAAGACCGCCCAGCCCACGGGCTGGACGGCAGGAGGCGCCGAAGCGGGAAGACACCGGCCCACCCAGGTCGGTGCCACCTCAGCGGAGCGATCCGCTGACATCCCCACCACCCGAGCCACCTGGTCAAGAAAAGGCAAAGCGGGTCTAACGTCGCAGGCCAGAAAGT # Right flank : AACAAGAAACCCTACGAGGCGTTACGAGGAAGAGCTCCGTATGCAGAGGAAGTTAGAGGGCTTCTGCGCGGACATTGACATGCTCGTCGAATTCGACGTGCAGGGCTCAGAGGGCGACCACCGCAGCTTCCGAGCGAGCACTGGTGGCAGGAGCGCCTGTCTGGTGTACTGCTGCCCGGGCTGGTCGTGTCCATTTCGCTACCTGGTGTGGGCTTTCAGAGTCATACCCTTGCGTAGTGATCGAGTCGCGTCTGCCCCCTGGCGATCCTGCCGAGTTGTACCTGCGCATCTCCTACACCGATGAGCTGTCCGGGACGCCTGACAAGGACGCGCTGGAGCGGTGGGAGGTTGGTGTCCTTCACGGGCAGCCCGACAACGAGGCTGTGGGCGGGGCGATGGTCTTCTACCGGGTTCATCTCGACCGGGGCGGCCACGCGGGGCACGCGATGGAAGACGAGTCAGAGGATCTCGCGGAGATCGCGGAGGCGATCCTCGACGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGGCCCGTACGTGCAGGGGATGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 1504073-1501117 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1504072 29 100.0 32 ............................. AGTCCGGCGACGGGCGCGAGGTCGTTCACCCG 1504011 29 100.0 32 ............................. TGCGGACCGCCCGCTTCCTTGTCTCCGGACGC 1503950 29 100.0 32 ............................. TCGTCGTGGCCGCTGGTGCGGGGGCAGATCGC 1503889 29 100.0 32 ............................. CGCGAGGCCGGGTGGGCCGCCGTACTTCCGGC 1503828 29 100.0 32 ............................. TAGGGGCGCGTCACCCACCGGGAGGCTTCCTC 1503767 29 100.0 32 ............................. GTGGGGGCGTTGTCCCCGGCCTCGGATCCCTC 1503706 29 100.0 32 ............................. TGGTCGCCGCGCTGCTGGGTCATCGACGCCGC 1503645 29 100.0 32 ............................. ACGGACATGGCGGCCGCGGCCTGCTCGACGGT 1503584 29 100.0 31 ............................. TTCATCGAGTTCACCAAGGAGAGCCTCCAGC 1503524 29 100.0 32 ............................. TACCTCGCCAGCGACTTGGGCCAGCAGTTCGA 1503463 29 100.0 32 ............................. GCGTTCGAGAAGAGCCCCGTCGGGCTGAAGGA 1503402 29 100.0 32 ............................. GCGGGGTCAAGGCCACCACGGGCCGAGGAGAC 1503341 29 100.0 32 ............................. CTCTACGGGGCCACCGTCACCGAGTCGGTGGA 1503280 29 100.0 32 ............................. CAGCTACAGCAGGTTCCTTGCGCGCCGGGGTA 1503219 29 100.0 32 ............................. CCGACGCGGCGGACGCCAAGAAGGCCTACATC 1503158 29 100.0 32 ............................. TCGGCGCGGTATGCCTTGAGAATCATCCGGCG 1503097 29 100.0 32 ............................. GTGCGGCCGCCGCGCATGCGGTAGGCGTCGAC 1503036 29 100.0 32 ............................. CCCGCGGCGAGGTGGTAGACGAACCAGATCCG 1502975 29 100.0 32 ............................. TCGCAGCCGTGACTCACGACCAGGCTCGGCTC 1502914 29 100.0 32 ............................. ATGCTCGCGCGGCGGCGGCCGAGCCCGTCGAC 1502853 29 100.0 32 ............................. TCGCGCAGCTCCTCGCCATCATCGCGGCGGTG 1502792 29 100.0 32 ............................. TCGCTGCGGGTAACCGCAACCGCCGGGGTGCC 1502731 29 100.0 32 ............................. GTGCCGCCGGTGGGTCCGCCGGTGACGGTGAG 1502670 29 100.0 32 ............................. GCGGATCAGACCGCGGCCGGCTTCTTCGCGGG 1502609 29 100.0 32 ............................. TACGGAGGAGTCTGATGGACATCGGCCAGAAG 1502548 29 100.0 32 ............................. CAGAAGCGGGCGAAGGACAAGCAGAAGGCTGC 1502487 29 100.0 32 ............................. GATGCTGCCCGCGCGGCACCGGGCATGGCGAA 1502426 29 96.6 32 .............G............... ACGCCTACGAGAAGGACTCGGCCCGCGCCGGC 1502365 29 96.6 32 ........................C.... GCACTCAACGCCGTGCTCCCGGCGGTCAGGGT 1502304 29 100.0 31 ............................. CCGCCACAGCCACCACAACCTCGACGGCGCG 1502244 29 100.0 32 ............................. ACGTCCGGATCGGCGGGCACCGTGAAGGTGGA 1502183 29 100.0 33 ............................. GCCGAGTCCGACCTCAAGCCGTTCGTCTTCCTG 1502121 29 100.0 32 ............................. AACGCCGAGGCCCTCCAGCGCGTGGTCGACGT 1502060 29 100.0 32 ............................. ATCTCGGCCTGCCGATACTTGAAGTCGACGGC 1501999 29 100.0 32 ............................. AAGAACGCCGAGTCCAAGAAGCAACGCGAACA 1501938 29 100.0 32 ............................. TCGCAGCCGTGACTCACGACCAGGCTCGGCTC 1501877 29 100.0 32 ............................. GTGCCGCCGCCTCGGTCTCCTGGTCGTCGTCG 1501816 29 100.0 32 ............................. CGCGGGGTGGGGGCGCCTTCGACGACGGCGGC 1501755 29 100.0 32 ............................. CCATGGAGGAAGTCCTCGAGCACACCGACCTC 1501694 29 100.0 32 ............................. ATGTCCTTACGCTTCGACTCGCTGGTGCGCTG 1501633 29 100.0 32 ............................. TACCCGACCACGGACCGCACTCCGGCCATGGA 1501572 29 100.0 32 ............................. CTTCCCAAGGTCACCAAGGGCAAGGCGGACCA 1501511 29 100.0 32 ............................. CACGAGATCATGGGCGGTCAGACGCTCATCAA 1501450 29 100.0 32 ............................. GTGTACGCCTCAGCCGGGTCGGTGGTGCCGGT 1501389 29 100.0 32 ............................. GAGGCCGGGTGACATCACCGGCTGCGTGACCA 1501328 29 100.0 32 ............................. GAACGGGTGCGGGGCGGTGCCCGGGTGGTCGA 1501267 29 100.0 32 ............................. TCGAGGAGACTCCGCCCCAGCGACCCGATGCC 1501206 29 96.6 32 .C........................... TCCGGCCTGCAGCTGGCGATGACCGCCACCTG 1501145 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.7 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : CCCACGCATCGTCCGCGACGTCCAGAGCCTCCTGACACCACGCCCCACAGATATCACCGATGAAGACGAGCCACAGGAGAAGCGCGACGTCCAACTGGTCCACCTCTGGGATCCCAAGGCCGGTGCCCTTCCTGCCGGCGTCAACTACGCGGCACGAGGTGAATGATGCCCTCCATGCTCGTGATCGCCACCACGGCCGTTCCTGACCACCTCCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCTCGCGTCCGCGACCAACTCTGGCAGGCCGTCACCGACACCGTGGGCGACGGCGCCGCCGTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCCGTCCGAACCGCCGGCACCCGCCGCCGCGTACCCGCCGACTTCGACGGGCTTACCCTGATCCGTATGACCGCCGCACCAAAGGTAAAGGAAATGCAAAGCCCTTCTTGAGGTGCAGGTCAGAAAGT # Right flank : CCCTAACGGGCACTCAGCTCACATGCAGGATTGTCCTCGTGTTTCTGCCTGTTCCTGGGCGCTGTTGGTCACGCGTTGGTCATGCGCCCTTTGCTGGCGGCTTCTGGCGGTAGCAGGGCGGACGCTATCCGGTCGGCAGCGGGCCGAGGTGCTGCACGGAAGCTCGCAAGAGGACGAAAGGGCCCGGCTCGTCTGAGCCGGGCCCCTCGCCGTCACAGTCGGTCGGAAATAGATCGGTACCCCCCGGCCGTTGAGTACCTCCTTACCGAAAGAGGGGCAGGTGCCGGGGAGTGAAGCTGTTCCGTGCGGACACGGCGAACAGCGGCATGAGCGAAGTCGTGCCGCGTCTTGCGGGGGTCGAGGCGGACGTGCAGGGTCTCGTCGAGCCGCACATGCATACGCTGCTGGGCGTCCGGTTCTTGGCGAGCGAGTACAGCACCGGGCCGTTGCACGGGGGCCGGATCGACTCGCTCGGGCTGGACGAGAACGGCAGCCCGGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1513968-1518203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 1513968 28 100.0 33 ............................ GTCACGAACATGACCATCCCGCCGCGCCGGACG 1514029 28 100.0 33 ............................ TCAGCAGCGTCCGGTTCGTTCTTGCCGTCCTCG 1514090 28 100.0 33 ............................ CCCTGGATAGTCGGGAGTAGGTCTTTCCACGCG 1514151 28 100.0 33 ............................ CGCGCCAGCCTCTCCCCGCTCACCCGAGGCTGG G [1514172] 1514213 28 100.0 33 ............................ CCGATGAGCGGACCGTTCGAGTTCGAGCTGGTG 1514274 28 100.0 33 ............................ TCGAGGAGCTGACCGCCCAGCGAGAAAAGGCCG 1514335 28 100.0 33 ............................ GACGGCGGCTGGGCCCGCAGAGACAGCGAGCAG 1514396 28 100.0 33 ............................ ACGGCCCCTCCGGCTCATCTCAACACCACTGAG 1514457 28 100.0 33 ............................ GAGTCCGGGGGCACGCCGACGCTGGACTACGAG 1514518 28 100.0 33 ............................ CAGCAGAGCGGCCCGCCCAGGTGAAGCAGCCCG 1514579 28 100.0 33 ............................ CACCACCAGGTCGACGACTGGGTCAACGAACTG 1514640 28 100.0 33 ............................ CTGATGCCGGACACGGCCGATTCCTGGCGCATG 1514701 28 100.0 33 ............................ ACGGCTGGCGGCGAGAGGGGTGGGGTCGTGCCG 1514762 28 100.0 33 ............................ GGAGGCCGGGATATGCCCGAGAACACCGGATAG 1514823 28 100.0 33 ............................ TCCGGCTGGAAGGTCTCGTGGCAGTCGAGGAAG 1514884 28 100.0 33 ............................ TCGCGGACGATCGCGGCGACCTCGGCGGCGCCG 1514945 28 100.0 34 ............................ CCATCAGCTACACCTTCCCCGGTGTCCCCCGCAG 1515007 28 100.0 33 ............................ GACGTGCTCGACATGCTGGAGGAGCTGTGGGCG 1515068 28 100.0 33 ............................ ACCATCGCGTCGCTGCTCCGCTGGCTCGACTTG 1515129 28 100.0 33 ............................ AGGTCCAGCGGATCAGTTCGTGCGGCACCCCGG 1515190 28 100.0 35 ............................ CCGAACCCCTCCCCAACCGAACCATCAGCATCGTG 1515253 28 100.0 33 ............................ CCGAGTAGTAGCCCGCGCAGCGCGGTGCCCCGG 1515314 28 100.0 33 ............................ ATCAGCGGCAACGGCAGCGGCAACGTGATCCTG 1515375 28 100.0 33 ............................ CAGGAGTGCCAGGACTACGCCCAGGTCGTCGAG 1515436 28 100.0 33 ............................ CCCGACCAGGCCGTCGTGTTCCGCTCCCCGGTG 1515497 28 100.0 33 ............................ TACTGCGACCAGGTTGTCCGCATCCTCGATCAG 1515558 28 100.0 33 ............................ TTGGCGATCCTGGAGGCGCGCGACGGGCGCCCG 1515619 28 100.0 33 ............................ CACCACGCCTCGCCCTGGCCGTCGCACACGACG 1515680 28 96.4 33 ...........................A CGGGAGAACACAGTCAGCCGTGCCCAGCGCTGG 1515741 28 100.0 33 ............................ GCCCGGCGGTGGGGCATGCCGAGGCCGGGGTCG 1515802 28 100.0 32 ............................ CCGAACTTCCGGAAGCTCCTCGCCGCCGGTCG 1515862 28 100.0 33 ............................ CAGCTGATGCCGTGCTGCGCGACTGGCAGGACG 1515923 28 100.0 33 ............................ CAGCTGGCCCGCAGCTATCCGACTCCGAGCGCG 1515984 28 100.0 33 ............................ CACGGCCGCTCCCCGAGACGCCGGTGGATCTCG 1516045 28 100.0 33 ............................ TCCTGGGGGCCGCCGTCGACCTGGACGACGAGG 1516106 28 100.0 33 ............................ ACCAGGGTGCGGCCGAGCTGGACGTCCGGCCTG 1516167 28 100.0 33 ............................ GTAACGGCGCTGACCTCGAACAGCCTCACCTCG 1516228 28 100.0 33 ............................ GACGGAGCTGCTGGCCGCGATGGGAAGGACGGG 1516289 28 100.0 33 ............................ CCCTCGAAGCGCTCACCGCCCCCGCCGCCTGAG 1516350 28 100.0 33 ............................ GATCGCTTGCCGCTTGATCCGGGCGTCCACGCG 1516411 28 100.0 33 ............................ TCCCCGAACGCATTCGGGGCGCGCGCGGCACGG 1516472 28 100.0 33 ............................ GAGGACAGCGACACGTGGCGGAGCCGGCACGAG 1516533 28 100.0 91 ............................ CGCCACACCGACCTGACCGACGATGACGCCTAGTTCTCCCCGCCGACGCGTTGTTCCGTCCGCGGCTGGTGGACCGAGTACGAGGCGGCCG 1516652 28 100.0 33 ............................ TTCGCAACTGTCCTTCCGGCCGTCGCCATGACG 1516713 28 100.0 33 ............................ AACCCGACTGCACCGCCGACATCGACCGGGGCG 1516774 28 100.0 33 ............................ TACGATCTGCGGCTGGTGCGGCGACCGCACCCG 1516835 28 100.0 33 ............................ CCCCGCCGACCAACCCCAACCAGTGCCCGTTCG 1516896 28 96.4 33 .......................C.... TAGGCATATGCGGCTCACGGCGGCGCAGACCGG 1516957 28 100.0 33 ............................ GAGCGGTATGGCCGACAGAGACCAGGAGGTGCG 1517018 28 100.0 33 ............................ CTCCCCGCCACGTTCCGGACAGGTTGCGGGAAG 1517079 28 100.0 33 ............................ TGGTTGGTCAGCATGATCAGGGTGTGCGACGGG 1517140 28 100.0 33 ............................ CCGTCTACTCCCCCGCCGCCGACCTGCCGGTCG 1517201 28 100.0 33 ............................ GAGCAAGCCGCGCGGACGCTCAGGGACTTCGAG 1517262 28 100.0 33 ............................ GTCACCAACAAGGCGCAGCGCGACAGCCTGTAG 1517323 28 100.0 33 ............................ ACGTTGAACGGGGTCGCGATCGACGCGGCCGAG 1517384 28 100.0 33 ............................ GACGAGGAAGAGGGCCAGTCCGGGCTCGTAGTG 1517445 28 100.0 33 ............................ TTCTACTCCCCGTGGAGGAAGACTTCGCGCCCG 1517506 28 100.0 33 ............................ CTGATCATGTTGTTGCTGATGCGGATCGGGAGG 1517567 28 100.0 33 ............................ ATGCCCGCCTGTAGTCCCTGCGTGTCCGGGGGG 1517628 28 100.0 33 ............................ ATCGACACGGAAACGCGGGACCGATTCGCCGCG 1517689 28 100.0 33 ............................ TGACCTTGCCCCCACCGGCTGGGACGGTGCCGG 1517750 28 100.0 33 ............................ AGTCCACCTGGCGGCCGAACACCCCCGGCATCG 1517811 28 100.0 33 ............................ CACGTCCTGCCGCCGCTCGAAAGCTTCATGGAG 1517872 27 89.3 33 .C..-............T.......... GTGGCGCGGGCGTTGGGGACGAACGTGCAGACG 1517932 28 96.4 33 .C.......................... ACGGCGGGCCCGCCGTCGCGAAGGACGGTCCGG 1517993 28 96.4 33 .C.......................... CGGCGCCTGTACCAGCCGCTCAACCGGCCGGTG 1518054 28 96.4 33 .C.......................... GTCCACTACGAGGGCATGGCCGTGAGCACGAAG 1518115 28 92.9 33 .C..T....................... TCGTCCAGGTCCACCGGGGTCTTCTCGACGGTG 1518176 28 85.7 0 .C......T.....A......G...... | ========== ====== ====== ====== ============================ =========================================================================================== ================== 69 28 99.3 34 TTCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : CCAGCACACAGGCCAACGAGCACCCGAGCGCGATCCTGCTCCCCGGCCAAACCCATCCCCTCAGCTATACACACCCTCTGGTTCTCCGACAGATACACATCCCACAAGTGAAGCGCCATCGCAGCCGCGTCAAGAAGGTGTCTCACCAACGGGTAGGGAGGCAATGCAGGATCCAACCCACGAAACTTCCCCCACGCCGACTCATCCACCACGCTCTGCCTACGCCGCACACCGGCCCTCTCGCTTCACCACTCGACACCGTTCCGGCAACGGAAGCCAACTCGCCACCGATCGCATACAAGCACCCGCCACTGACATTGATGCCACTGCTCGCGTTCCGACGACCATGCCATGGCCAGTGACGGGGCACCATTCTCGCCTTGACGACCTTGCAAGCCACAGCTGGATAGAGTGATGGCATGCGACCGACTGAGCGACCCACCCCCGCAAGAATGGCAAAGAAATCGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGTG # Right flank : GCTGCGCGGGAGGGATCTCGATCAACAGCCCGGGGCCCCGTCCGTTGCACCCCACGGCCCATCACCCGATCGGTGGCCAACTCGAAGAAGCTCACCGTACGGCGTCCGAGGGTTGTCGGGTGCCGTCGACCCACTGCCATCAGCGAAGACCGAGTCGTCGTCGATCCTAGGGACCCTACCAGCCCGCAAGGTATCGGCCGAGCGCCAGCCACTCGACTTCTAGGCTCCACTGGCCGCGCTGAAAACGAGGTCGTTCGACGCACCCGTACTGCCGTATAGAGCCGAAAGACGCCCATCAGCGGTGGGAGTGCCCTGGGACTTCTCTGGGACTTCTGGCCCCATCAAGCTGCACGAACGTGAAATAGCCGAAAGGTCATTCGCGCAGGTCAGCCACTATTAACCGCTCATCGCGGCAGGTCACCGCACTCGCTGGTCTCTTCCGGGACATCTGACGGTGGGGTGTTGTGCCCCTTGGAGCCAAGGGGCACAACACCGCATCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3371742-3372013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3371742 29 100.0 32 ............................. GGGATGACGACCGTACGCCCGTACGTCGCCAT 3371803 29 100.0 32 ............................. TTGTTCGGGTAGGTGCGGGGCTTGGGTTCGGC 3371864 29 100.0 32 ............................. GGGGACCCCGCGCTCCCGTTGCCGGACACGTT 3371925 29 100.0 32 ............................. ACCGCGTCAGCAGCAGAATCAGGCTCCGCGGC 3371986 28 89.7 0 .......................-.A..G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCGAGCGCGGGCATGCGTGATGGCTCCTGTGGCGGACACGGGGACGGCCGACGACCGGGGAAGGGAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGACCCTGGCGACCCGGGGGCGACGGGCTGCCGCCAACAGTCCGGTGTGCGACCGAAGTGCGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGAAAGCAGATCCCGGGGGTGCTGAACTCCGGCCACCTGGCGACCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAG # Right flank : GGCGAGGCCGACCCGGTGATCAAGCGGGCCGGCGACCAGGTGATGTCCGGCAGCTTCGTCGTCGCGGGCGGCGGGGCGTTCACCGCGACCAAGGTGGGCCGCGAGGCGTACGCGGCGCAGCTCGCCGAGGAGGCGTCGCGCTTCACGCTGGTCCACTCCGAGCTGCGCAGCGGCATCAGCACGATCCTGAAGTACGTCACGTGGATGATGGTCCCGACGGCGATCGGGCTGATCATCAGCCAGCTCGTCGTGAAGGACAACGACTTCAAGGAGTCCGTCGCCCGGACCGTCGGCGGCATCGTGCCGATGATCCCGGAGGGCCTGGTCCTGCTGACGTCGGTGGCGTTCGCCATCGGGGTCGTCCGGCTCGGCCGCAAGCAGTGCCTCGTGCAGGAGCTGCCCGCCATCGAGGGGCTCGCCCGGGTCGACGTGGTCTGCCTGGACAAGACGGGCACGCTCACCGAGGGCGGCATGGACGTCAGCGAGGTCCGGCCGCTGAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3435390-3436574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 3435390 30 100.0 31 .............................. CCCTCGGCCAGCGCGGTCCGGGCCTCCTCCG 3435451 30 100.0 29 .............................. TTGAGCTTCACCAGCTTCTGCTGAAGCCC 3435510 30 100.0 31 .............................. CGGATGACGGACGCATCAAGGTCCCCGGTGT 3435571 30 96.7 31 .............................A CCACGCGTTGTACGTGAATACCCGCGACGGA 3435632 30 96.7 31 .............................G CCGGGGCTCTGTGGTTGGGCCGCCGCGCGGT 3435693 30 93.3 31 ............................TT ACCAGGCGGAGACATCGGGGCTCGCTCCGTT 3435754 30 93.3 30 ............................GG CGCGTCCTCCTTCATGGCGACGGTGGCGGT 3435814 30 100.0 31 .............................. AGAAGTCGATGAGGACGGTTCGCCCCACAGA 3435875 30 100.0 31 .............................. CAAGGGAGCGCACCGTGGCCGACTTCGAAGT 3435936 30 96.7 31 .............................A GCCGACGTCCCCCTCGGCGGAGGACATGACC 3435997 30 96.7 31 .............................G ACGTCCCCCCGGCGGAAGTCGGCGCGCTCCC 3436058 30 100.0 31 .............................. GCTCTGTTGCCTGGACCATCCGGGTAGGTTT 3436119 30 100.0 31 .............................. GGGTACGAGTCGCCGAGTCCTCCCGGATTCG 3436180 30 100.0 31 .............................. TCCGCCGCCCGCCTGCGGCCGACGCCAAGCG 3436241 30 96.7 31 .............................G CCGAGGGCGTGGCCACCGCGGCCATCACCCC 3436302 30 93.3 90 ...........A.................G CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 3436422 30 90.0 31 ......................C.A....A TCCCAACTACCTTCACAGCGTCAGCAGTTAC 3436483 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 3436545 30 83.3 0 .......................A.CAG.G | ========== ====== ====== ====== ============================== ========================================================================================== ================== 19 30 96.1 34 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGAAGACCGCCATACCGGCCCCGAAGGAATAGCCGCGCCCCAAGCGCACACCATCAGCCTCCGCCACCCCTCAACCCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAAAGGGGGTAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAAAATGGCATCAGCCGAATCACGCCTGTGGCCACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTGAGCAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCCCGCACCGTAGCCCGAACAAGAAACAGCCCTACAGGTCACGACGTTAGGTCGTCGCCCTCGATGTCGTCTTCCCCTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCCCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGGCGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCGCGGGCGGCTCCGTCTCGGCGGTCCACAGGCGGGCGGCGTGCTCGGTGGTCTCGTCGTGCTCACCCAACTCGCACAGCACGTACGGCTTGGCGTCCAGGAGGTCTTCCGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGCCGGGCGGGAGGTTGGTGATGGCGGTGCATTG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3440069-3442785 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3440069 30 100.0 31 .............................. CGGACACCGTCGCGGTCGTCGTCGTCGCCGT 3440130 30 96.7 31 .............................T GCTCGCCGTCGCCGCCTCCGGGGTACACCCC 3440191 30 96.7 31 .............................A GGGTGCGGGCTTCGGCCTCGCTGTCGAGCGG 3440252 30 96.7 31 .............................C GACCCCGCAGGCCCGCGCCGCCGCATGGCGA 3440313 30 96.7 31 .............................T TGATCATTGGCAAGAACAGGCAGGGGCCGAC 3440374 30 96.7 31 .............................T CACTGGAGTCCGAGCGGGCCCCTCTCGTTGG 3440435 30 96.7 31 .............................C AGCGACGATCTGCCAACCGTTCACGAGGCAC 3440496 30 100.0 31 .............................. CTGGTCTGGAACCAGCACTCCGCCATGATCC 3440557 30 100.0 31 .............................. CCGCGAGTGATTGACAAGGTTCCGCAATCCT 3440618 30 100.0 32 .............................. GCTACCCGCTCACCGCCGTGCTCCGGGCGGTG 3440680 30 96.7 31 .............................C GCCCTTCGGCCATGGCCTGGTTGATCTGCTT 3440741 30 96.7 32 .............................A ACACGATCGCCGAGGAGGCAGACAGTGACGGG 3440803 30 96.7 30 .............................T CACCGCCCCGCCCCACTGTTTCCCGCTGCT 3440863 30 96.7 31 .............................A GCGAAGTGCGCGACGCGGTCCAGAAGGCGGA 3440924 30 96.7 31 .............................C TCGCGGTAGTCATCGTCGCCATTCGAATGCA 3440985 30 100.0 31 .............................. CGATGGTGTTGCCATCACCGTGATGGCTGTG 3441046 30 93.3 31 ............................TC CTCCGTGGCCTCCCCTCGCGCGGCTGCGACG 3441107 30 96.7 32 .............................C AGATCCGTGCGCACCGCATGAGGCCGAGGACG 3441169 30 96.7 31 .............................T CGGCAGCAGGACCGTGCAGCCGGACGAGCTG 3441230 30 100.0 31 .............................. CCATGTGGCACGCCTCGCGGGCCTGCTCGGG 3441291 30 100.0 31 .............................. GCAACTGGTAGGTGGCCGGGCGGCTGCCGAT 3441352 30 100.0 31 .............................. GCCCGCGCGGCGGCCAGGCGATCGAAGACGT 3441413 30 96.7 31 .............................C TCGTGATCGCTACCGCCGTCGCCCTGGCCGA 3441474 30 96.7 31 .............................C GACGGCGACGAGGGACGTCGAGCCGAACCCG 3441535 30 100.0 31 .............................. TCCACAGCGCCCCGGGCGACTTCTACTCCAA 3441596 30 96.7 31 .............................T TGTACGCCTCGCGCCGCAGCTTGTCCGTCTT 3441657 30 100.0 31 .............................. AGGCCCTGGCCGACCTGCCCCCGGCGACTAG 3441718 30 100.0 31 .............................. GCTCCGGCTCCAGGGACTTCTGCAACCAGTC 3441779 30 96.7 31 .............................T TCCGATTCCTCCTGCGCGTGCCGGTGGAATT 3441840 30 96.7 31 .............................T TCCGATTCCTCCTGCGCGTGCCGGTGGAATT 3441901 30 96.7 32 .............................A TCGGGAGCGTGTCGATCGTCGTCACATCAGGT 3441963 30 96.7 31 .............................C GCGGGCCCCACACCGCCCCCGCCCGACCCAT 3442024 30 96.7 31 .............................C GGGCGGGGTCGAAGTCGCCGTCGAACTTGGG 3442085 30 100.0 31 .............................. TCCACTCTGGCCGCACGCCAAGCCCCGTGAC 3442146 30 96.7 31 .................A............ GTGGCGACCGGTTCCCGGCCCGACCGAACAT 3442207 30 100.0 31 .............................. TCCGCGTCCGTGTGCTGAGCCGCACCGGCAC 3442268 30 96.7 31 .............................T GGGAGAGGGCTCCGTTCGCGAAGTACACGAC 3442329 30 100.0 31 .............................. CCCCCGTCCCCGGCCTGTGAGCCGCCGCCCT 3442390 30 96.7 31 .............................C GTGTCCAACCACCTTACCGAGGACAGGATCG 3442451 30 96.7 31 .............................C GACAGGTCGAAGATTCGGAGCGCGCAGTCCG 3442512 30 100.0 31 .............................. AGTAGGCGGAGAAGCCCCGCGACTCGATCTG 3442573 30 96.7 31 .............................A TCGTCAACGGCGTGCTGGCCCGCTCGATCCT 3442634 30 96.7 31 ............T................. CCACCTCGTACTCCGAGGGCAAGGTCTACGT 3442695 30 93.3 31 .............G...............A GGTCCTGCCAGTCGGTGAGGAGCCGGACTTG 3442756 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== ================================ ================== 45 30 97.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTACGGGGCGCCCGCAGTTGAAGGCAGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGACGGACCGAAGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTCGGACAGCGCCAGCCCTTCCCGGACTCTCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGAGCAGAATGGCATCAGCCGAACCACACCTGTGGCTACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGACATCGTCGTCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGAGTGGTCCTCGTACAGGCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGGCGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGAAACCACAGGCTCGCGGGCGGCTCCGTCTCGGCGGTCCACAGGCGGGCGGCGTGCTCGGTGGTCTCGTCGTGCTCACCCAACTCGCACAGCACGTACGGCTTGGCGTCCAGGAGGTCTTCCGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGCCGGGCGGGAGGTTGGTGATAGCGGTGCATTG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 3448013-3449202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3448013 30 96.7 31 .............................C CGATCATCCCGCCGAGGCCCTGGCGGTGCTG 3448074 30 96.7 31 .............................T TGATGCGCTGCGGCCAGTCGATCCGCCGCAT 3448135 30 96.7 31 .............................C TCCCGAGGAGACGCACCGACCGACTGACTGA 3448196 30 100.0 31 .............................. AGGCGAAGGAGGCGTAGCCCACGATGACGAA 3448257 30 100.0 31 .............................. CCGACGTCCACGTCTACGTCGGTGACCGGGA 3448318 30 100.0 31 .............................. CGGCCACGATCCGGCTGCGCTCGTTCGGAGG 3448379 30 93.3 31 .........................C...T TCCTGCTGCGGCTGCTGTGGAGGCGCTGTCG 3448440 30 100.0 31 .............................. CCTCCAGGACGGCCCGCTCCGCAGCGGTGAC 3448501 30 96.7 31 .............................T ACGTGATGGGGGAGCGCCTGGGCGCTCCCTT 3448562 30 96.7 32 .............................C ACCACCGGTACTACCTGCTCCACTCCCTCCCC 3448624 30 96.7 31 .............................T TCCTCCAGCACCACGGCGGTGGCCTTGAGTC 3448685 30 96.7 31 .............................T CCTGGGGGAACGCCGCCTCCACTTGCTTCAC 3448746 30 100.0 31 .............................. CGGGGACACGCACGAGGTGTCCGGCCTTGGT 3448807 30 96.7 31 .............................C AGGTCAGCCGCTTCACCGCGCCGCAGCTCCG 3448868 30 96.7 31 .............................C GCACGACGCGCATTTCCAAGGGGGCTCCGGA 3448929 30 96.7 31 .............................A CCTTCCGCTGGGATCCCATCCGGGGCTGTGA 3448990 30 100.0 31 .............................. GCGGCCAGTCGCGCTCGATCAGCAGGACGTC 3449051 30 96.7 31 .............................A CCCTCGACGGGGACTTGATGCGCAGCGCCTG 3449112 30 90.0 31 .....A...................C...T CGGGGGACACCTCGAAGAAGTTCAGCTCGAT 3449173 30 93.3 0 ..........................T..T | ========== ====== ====== ====== ============================== ================================ ================== 20 30 97.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCGACAAGATCCCGCCCTGCCTCCCCACAACGGCAGGAGTCGACTCGCCGGGAGCCAAGGAACCCGCCCACGAAACCCTCGTCGAGTGCACCAACTGCCGCCGCCCAGGCCCACCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGTCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCAACCGCCGCACCCCTCGTAGGGCAGGTCGGGCACACCGCACCCCGGGGCCCACACCTGCGAAAGACAGAGCCGTACCTCTTGCACCGAAGCCGGGCCGCCCAGTCTGGCGGCGGGCAGAATGGCATCAGCCGAACCGCACGTGACCACTCTGCGACGGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : TTGTCTTCAAATCGAGGAGCCCACGGACCGACCAACGCAGTCGGGGCAGTGCGTGCAGTCGCCCTACCTGCTTCGATAAGGAAATCTACGTACGCCGCAACGAAGTTGAGCCGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCCACGCGATACGACTAGCGCGCCCACGTCTTAGAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGATAGATCCATTGTCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCACCCGTAGGGTTACGGGGATCGAGCACGCCATACCAACCTGATGTGGAGTCGAGAGTGGTACGTGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCGCGCCAACAGCGATGATCCCGCTGAGCAGTTGGTATGGCGTCGGCTTACCGCGCAGCACGGTGACCGGCTCGGTCAGA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 3479894-3481222 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 3479894 30 100.0 31 .............................. TCTCCAGCTCGGCGACCCGGGCCCGCAGCCG 3479955 30 100.0 31 .............................. CGCCCGTACCACCACCCCCGCCCCTGCTGCC 3480016 30 96.7 31 .............................T CCTTGCGGATCTCGGCGCGGGCCTGGCTCAG 3480077 30 100.0 31 .............................. CCCGATGACCGAGCCCGTCTACATCCTGATC 3480138 30 96.7 31 .............................T GTCCGGGGGTCTTGGCGGTCATGGGATCGAT 3480199 30 100.0 31 .............................. CCGACTTTGTCACCGACATCAAGGAGATTGG 3480260 30 96.7 31 .............................A GCACGCCGAGACGCTGAACGGCGTATGCGAG 3480321 30 96.7 31 .............................C TCCGCCGCCCGCCTGCGGCCGACGCCAAGCG 3480382 23 76.7 0 .......................------- - Deletion [3480400] 3480403 29 93.3 31 -............................C TCGCCGACGAGCCGGGCACGGTCGCGATCCA 3480464 30 100.0 31 .............................. CGGGGAGCGACGTCTCCGAGGAGTACGCCCA 3480525 30 96.7 31 .............................A CCGCGACCTTCGCGGACGAGGATGACGACCG 3480586 30 96.7 31 .............................T GGTCGACGACGGCCTGGTCCTCGGGGGAGAT 3480647 30 93.3 31 .C...........................T CCGCGAGAGCCCGGGGCTCGATCTCGGGGAG 3480708 30 100.0 31 .............................. CCCGCGCACGGTCGGACGGGTCGAAGTCCGG 3480769 30 100.0 31 .............................. TCGGCCCAGCCGGGTTTTCCACAGCCCGGGG 3480830 30 96.7 31 .............................A AGGATCGAGCCAAGGGCGAGGATCCGGGCGT 3480891 30 93.3 29 ............................TA TTCCCACCCGCGCGCAGTGCAGGAGGAGG 3480950 30 96.7 31 .............................C TGCGGACCGCCCGCTCCCTGGGGGCGGCGGG 3481011 30 90.0 31 ........................TC..T. TAGGGCTCTCCCAGCTCCTCGAAAGCGGAGA 3481072 29 90.0 32 ..........T............-.....C TCGGGCGACACCTCGAAGAAGCTGAGTTCGAG 3481133 30 93.3 31 ............................TT ACGCGATCGACCACTACAAGGTCGTCCCGAG 3481194 29 86.7 0 ...........A.............-..AT | ========== ====== ====== ====== ============================== ================================ ================== 23 30 95.2 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCGGAGAGGCAGAAACCCGATCGCCGGGCGCCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCGGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCACCCCTGCCACCACGCACACACCCACGGCGGCGACCCCACCACCCCCACCCCGGACGAAATCGCCGCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGGCAGAACCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCTGTGGTACGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACACGGTAAAAGCCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCCGAGTGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCTCCTTCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGTCAGTCACCGTCAGCCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCTTCCCACAGCAACCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCACTCGTCACCCACACGCGCACCCCGTCACCGGCGACACTCTGGTGAATCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCGGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCACAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 4116214-4114313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4116213 30 93.3 31 .................C...........A GGTCGAACAGGGCGAGGACGGTGGCGGCGAC 4116152 30 93.3 31 .................C...........C ATGCCGGACAGGATGCGCCGCACGATCGTCT 4116091 30 90.0 31 .................C..........TC ATGAACCGGGGCCGTAGGACCGCACTCAGGT 4116030 30 93.3 31 .................C...........A CCGGCGGGGCCGCCTCCTGGGTGAAGTGCTT 4115969 30 96.7 31 .................C............ CCGCCTACCTGTCCGCGCTGAAGGTGTGGCT 4115908 30 96.7 31 .................C............ GGCCTCCCAGGTCCATGCCGGGAACGTCGAA 4115847 30 93.3 31 .................C...........A CAGTGGTGAGATCCTGGGCCTTCGTCGCGAT 4115786 30 96.7 31 .................C............ ACGCAGCAGGCCGCCGGTCACGCATTTACGT 4115725 30 100.0 31 .............................. CCTTCCGCAGCGCGAGCGCCTCCGCGCACTT 4115664 30 100.0 31 .............................. TGAACCCCTCGCGCAGCTCTACCCGCCACTG 4115603 30 96.7 31 .............................C TGCTCCGGTCCCAGGACCTGGTCGAGACGCT 4115542 30 96.7 31 .............................C GCCCCGGGGTCCGGCCGGGGCACCCGTACGA 4115481 30 96.7 31 .............................C TGTTCACCCGGCACAAGGACCTCTGGCAGAG 4115420 30 93.3 31 ............................TC AACTTATACGGAGGGTGGCAAGCGCCGGTCG 4115359 30 96.7 31 .............................T GGTGGTCGTCGTCATGATGCGTTCTCCTCGG 4115298 30 100.0 31 .............................. ACGAGCCGACCGCCCGGTCACGGCCCCCGTA 4115237 30 100.0 31 .............................. CTCCCCGAGACGAAGTTCCGCCTGGCGAAGT 4115176 30 96.7 31 .............................C TCTTCGGCAGCAGCGCGATCCGCTGGCTGCG 4115115 30 100.0 31 .............................. CGCGACTCGAAGGTGGAGAACTCCGTCGACT 4115054 30 83.3 7 ............G.....C...C.A....A CCGCGCG T,C,A [4115025,4115042,4115045] Deletion [4115018] 4115014 30 96.7 31 .C............................ CCAGCATCGCGGGCACGACCAGGGCGACACC 4114953 30 93.3 32 .C...........................A CCCCGCCTCGCCCGCTGGCCGTATGCATCTCG 4114891 30 96.7 31 .C............................ ACGGCGGGAAGACCTGGGTGGCGGCCCGGGT 4114830 30 90.0 31 .C........A..................T CCGTCATGCCCTCCCTCCCGGACGGCCGACG 4114769 30 96.7 30 ............................G. CCCCATGGCCACGGACGACGCGCCGAGCTG 4114709 30 96.7 31 .............................A CTGCTCTCGTCCTCGGTGCCGGTGGCGCTGT 4114648 30 96.7 32 .............................T TGATGGCGTACCAGGGTGCGGTGACGCACGGT 4114586 30 100.0 31 .............................. TAGGAGCGAAGTGCGATGGGCCCAACCGGGT 4114525 30 96.7 31 .............................T CAAGATGGCCCTCTTCCGCTTCCTGTACGGG 4114464 30 96.7 31 .............................A CGGTGTCGCGCAGGTCGGTCAGCAGCCGGAC 4114403 30 96.7 31 .............................T ACCGAACGATCACGCAGTACTGAGGAAAGGG 4114342 30 96.7 0 ...........................G.. | ========== ====== ====== ====== ============================== ================================ ================== 32 30 95.8 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACCTCCCCGGAGAGGCAGAAACCCGATCGCCGGGCGCCAAGGAACCGACCCACGAGGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCGCCGGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCTCCTTCCACCGAAGCCGGGACAATGAGACCAGTGATGCGCAGAATGGCATCAGCCGAACCACACACCTGACCACTTTGCGCCAGAAGATGAGATATGCCGGTTTCCCAACAACATGGCAAAACCCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGT # Right flank : CTCATGAGTCCCCGGGCTGATGCAAGGCCCGCCGGGATACGGAGTTCGCATCGATTCGACAGGTACGCGCATCCCATCGAAACCAAGTTGATCAATTAAGTGCACTTGTATTCACCCTCGGACATCCAGCCCACTAGTGACCGCGCCGATGTCCAATACGGCCATGAGCCGCGATCTTCCGGAAAGCCATTCGGCCTTCGCCTGTCTGTCCGACGCCTCCCGCACCGCCTGGGGCAAGCACGACCGGACGACCGAGCAGTGGCTGCCGCTCTGGCGGCATATGGCGGACAGTGCAGCTGTCGCGGGGCGGCTCTGGGATGTGTGGGTGCCCGAAAGCGTCAAGGCGCTCGTCGCGGACGTGTTGCCGCAAGGGTCCCCGGATGCCCGACAGGTCGCCGTCTTCCTTGCGTGTGTCCATGACATCGGCAAGGCCACCCCCGCCTTCGCCTGCCAGGTGGACGGGCTCGCGGATCAGATGCGGGACGCCGGGCTGGAGATGC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 4768932-4766561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4768931 30 100.0 31 .............................. CCGCCTCCGGCCGCCCCACCCTCGTCCACAG 4768870 30 96.7 31 ............................T. CCGCACGGTGCGCGGGAGTTGGGGCGCAGCA 4768809 30 96.7 31 .............................C AGCGGAGGTCACGGATCGGGAGTCGCCAACT 4768748 30 100.0 31 .............................. CCGTCGGCCGTCATCCGAACGGAGACTTCGA 4768687 30 96.7 31 .............................T TGGGCGTCGTCCAGCTCCCGGCCGGCACCCG 4768626 30 96.7 31 .............................C TCGTCGACCTGGTCGAGCCGGACTCCGCGAC 4768565 30 100.0 31 .............................. GCGAGCTTGATGAGCGCCACGGCGAGGAAGC 4768503 29 96.7 0 .............................- - Deletion [4768475] 4768475 22 73.3 31 --------...................... CCCACGGAGAGCGCCGCCGCTCCCGGCCCCA 4768422 30 100.0 31 .............................. TCGCCAGCGGTACCGCCGCCTCTGCCTCCGT 4768361 30 100.0 31 .............................. ACGCCCAGGCCGCGCATCCGGCCGTCGCCCG 4768300 30 96.7 31 .............................C TCTTGTTCGCGGACATGCCGACGATCACCGC 4768239 30 100.0 31 .............................. GCCGTGCTTGCCCGCACAGAGCCCGGCGAGC 4768178 30 100.0 31 .............................. ATTGGGCTCGCCTCAGGACCATGTCCTGGAG 4768117 30 100.0 31 .............................. ATTGGGCTCGCCTCAGGACCATGTCCTGGAG 4768056 30 100.0 31 .............................. GGCTCATCTCTGGAGTTCCTGGCTGTGCTAC 4767995 30 93.3 31 ............................AT CCGACTGCCGTTCGCCGACGTCGAGCCCGAG 4767934 30 100.0 31 .............................. GCACCTGGCACTCGTCGAAGCCCACAACGAT 4767873 30 96.7 31 .............................C AGGAGTCGGGCGGCAACCCCAACGCCGTCAA 4767812 30 100.0 31 .............................. GCCAGACGACTGACGACTTCCGGACTATCCA 4767751 30 96.7 31 .............................T CCTCCGCCAGGCCGTACGGCGGGGTCACGAG 4767690 30 96.7 31 .............................C GCGCGGGCCCGCATCGGCCTCCAGGGCCCGG 4767629 30 100.0 31 .............................. GCCACGTCTCCGTTGAAGAACGCGTCCTGGA 4767568 30 96.7 31 .............................A CCTGCTCCAGCACCGTCAACACGGACTTCCG 4767507 30 96.7 31 .............................C GGTCGCGTAGGAAGGTCTCCCACGGCACGAA 4767446 30 100.0 31 .............................. CCTCTTGGCCGGAGACGAGTTGAAGAGGGCG 4767385 30 100.0 31 .............................. TGCAGCCCGCCCTCGACGGCACCGTCCCGAC 4767324 30 96.7 31 .............................T CGGCCTGCGTCAAACGCCCATGCTGCGCCCA 4767263 30 100.0 31 .............................. CGCCGAGCTCCTGGAGGGTCATGGTCTTGTC 4767202 30 96.7 32 .............................A CCGCGCAGGACTCCCTCACCCACCAGCGCGCC 4767140 30 96.7 31 .............................C GTCCCGGCTTCGTGACGTCGGCCTGACGGTC 4767079 30 93.3 31 ............................TC CCGTACTTCTTGTCACCCTCCTCGAACTCCC 4767018 30 93.3 31 ............................TC TTGTTCGACTCGACATTGGGCCCGGTTGCCT 4766957 30 100.0 31 .............................. CTCGGGGATGTCGATGTCAGCCATGGCCGAG 4766896 30 93.3 31 ..................A..........T GGCCCTGTGGCACCGCGTCGTCGCCGAGGAG 4766835 30 93.3 31 A............................T CGTGGCCGGCCACGACATCCGTGTACGCGGG 4766774 30 93.3 31 .........A...................T GCTCGGCCCAGTCCGTGGCAGCCTGCTGTTC 4766713 30 96.7 31 ................T............. CCGTACGCGCCTTCCGGCGCGCACAGGGGTG 4766652 30 90.0 31 ............AT...........C.... GCGGCAGTGATCGGCGTACCTGTACGACGCT 4766591 30 83.3 0 ...........C.GG......C.....T.. | T [4766576] ========== ====== ====== ====== ============================== ================================ ================== 40 30 96.4 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCACGACGACAGAAGACCGATCACCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGTCACCCCTGCCACCACGCACACACTCACGGCGGCGAGCCAACCGCACCCACCCCAGACGAGATCGCCTCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGAGGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGACAGAACCACGCTCCTTCCACCGAAGCCGGGACAATGAGACCAGTGATGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCCCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGCAAAACCCGCCTCCCCGCCGCCTAAACCCCCAGGTCACGAAGG # Right flank : CGGGTGTTCGCGGTGCCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGCACTCGGCGCGACACCGGGCCGCCCCGCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGTCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCTTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGTGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCTCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 4773932-4773353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4773931 29 100.0 32 ............................. TCCTTGCGGAGTCCACCGAGCTTGGCATTATT 4773870 29 96.6 32 ............................T GTCGGCGTCCCGGTCCTCGCGGATGTCGTCAC 4773809 29 100.0 32 ............................. AAGTCCGAAGATTTGTTGGATACCTTCAACGA 4773748 29 100.0 32 ............................. GTCGCCGACACCCGACTTCGCGGTGTCCTGGC 4773687 29 100.0 33 ............................. CTCCAGATCCGGTACGCCACGATCGGCGGGTCC 4773625 29 100.0 32 ............................. TCATGGTCGGCATGTTCCGCGACGGGGTCGGT 4773564 29 100.0 32 ............................. GTGCCTCGGGCGTCGAGCCACCGGAGGATGGA 4773503 29 96.6 34 .........................C... CCAGCCCGTCGCGGGTGATGGCCCGCGAGGTCGG 4773440 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 4773379 27 82.8 0 ............--.A.....T...C... | ========== ====== ====== ====== ============================= ================================== ================== 10 29 97.6 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTTCGACGCGAAGGGCACGAGCGACGGCCGCGATCAGGTGCGGGCTGGCCGGCAGGACGCCCTGCTCGGTCTTCGTGAGGGTGGAGTACGGGACTTGAGAGAGATCGGAGAGGGCCCTCTGCGTAAGATGCCTCTCCAGACGGAGACGCTTGATGCGTGCGCCGGCGCGGTCATGGGGCAGAGCGTGCATACCGAACTCCGTTCTGACTCGACACCAGAACGGTACCCGTCGGGGGAATGGGCGGGACCTCGATGGGCCCGCCTCCGCACCGCCAGCGAGATCGTCGCCGACCCGTGGAAAGCACCGACTTACGGTCCGGCGTCGCGGCTGCACCTCTTCGCAGAAACCGCGAGAAGCCCTCCCCTGCGATGAGGTACGTGCAGAATGACTTCTGTCGAGCATCAAGCAGGCTGATTCACCCCGAAGGTCCCGCATGACCGTTTCTCAAGAAGTTAGTAAAACCGAGCCTACGGCCACCTAAACCCGCTGGTCACGAACA # Right flank : TCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCCATAGCAATGCGTACACCCACGGCCCCCATCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGTCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTACCGGCGGGACGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 4777025-4776019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4777024 29 100.0 32 ............................. CGGGCCAGGACGCCGCGCTCCACACTTTCCAT 4776963 29 100.0 32 ............................. GAGCGCACCGGACACGCCGAGCGCGGTGACGA 4776902 29 100.0 32 ............................. GCCGATGGCGAGATGCAGCTCGGGTACCTCCG 4776841 29 100.0 32 ............................. GCCGCCGAGAAGGGCGTCAAGGCCGTCCAGAA 4776780 29 100.0 32 ............................. TGGACCGCCTCTGGGTCGTGCACGCGGACCGC 4776719 29 100.0 32 ............................. TGGAGCGCGCGACCGCCGGATACAACGTCGGC 4776658 29 100.0 32 ............................. ACGGCCCGCCTGCTGCGCTACCCGGAAGGACT 4776597 29 100.0 32 ............................. ATGTTCGGTTCCGGATGGGACACCCTCAAGGG 4776536 29 96.6 32 ..........A.................. TCCCGGCGCAGGGCTTCGACGACCAGGGCAGT 4776475 29 100.0 33 ............................. GAGCTCGCGCGTATCCAGCATCAGCGCGCAAGC 4776413 29 100.0 32 ............................. CCGCGTGGACAGGGCCGGGTCGCGGTCTACTG 4776352 29 96.6 32 ............................G GGAGATTGGGCCCCGCCATGTCAGTCCCAGTT 4776291 29 100.0 32 ............................. CTCGGCCGCCCGGTCCGGGCCGGGTACGCCAT 4776230 29 100.0 32 ............................. TGCTGTGGAGCGAACTCCCGCAGGACTCGGGT 4776169 29 100.0 32 ............................. TGCTGTGGAGCGAACTCCCGCAGGACTCGGGT 4776108 29 96.6 32 .........................C... CCGGCCGGTGGCGGCGCGACCCTCACCTACGG 4776047 29 82.8 0 ...C....T............A.T..T.. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : AACATCGCCGCCGGTGAACAGGTACGGTGGCTGCCCCGCCGTCAGGCATCCGACATCCCTCTGCCCGGTAACGACTTCTGGCTGTTCGATGACCGTCTCGTCCGGTGGAACCACTTCGGCGGCGACGGCTCCTCGCAAGGGCCGGAGCACACTACCGACTCGACGGCCGTGAAGCTGTGCGGGAAAGCATTCGAAGCCGTGTGGGATCGCGGCATACCGCACGACCAGTACGACATCCGCTGACAACCGCCCCCGGACGCCCCCCTTCTCAGCGCCAACGAGAGCGCCGCCGACGCCTGGAAGGCTCCGACCTAGGATCCGGTCGCGGCTGCACCTCTTCACAGAAGCCGCAAGAAGCCCTCCCCCGCAATGAGGGACGTGCAGAATAGCTTCTGTCGAGCATCAAGCAGGCCGATTCACCCCGAAGGTCCCGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGGGCCTACGGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GAGGTCGGTGATGGTTGGAGCGCCACCGAACGAGGTGAAGCGGCCGTGGCAGCGGTCCCCGCGCGAGCGGGGAAAAGTGCAACACACGGCGGAGGGGCGGCCGAGGTCACTCTGTCGGGTGTTCACCGAGGCGCGGCGCAAGCTTCGTGCCTCGATCACCTCGTGCGGGTCACACAACCAGGTTCGCTGCTCGCAGTTGGTCACCGTCAGTCTGAACTACGCAGGCGCGGGCTCGGGGACGGGCCACGGCTTGCTGGCGGGCGGGCCGCCGTGCTTGCCGCCACTGGACTGCCGGGAAGTGGTCATCGCGGTACTCCTTCTCGCGCGGTGGACCATCGACGTACCAGCCGCCACGTCGCACCGAGCCGACTGGCGGTGGGGCAGGCGACCCCAGCCCGGCAAGTGGCACAGAACAGCGTGTGACCGAGGAATGCCCGGTAAGCGGTCTCTGCTGGATCGAACGACGGCAACTCGGACACAGGCGCGGTCATGGTCAGCTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 4806077-4807346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058556.1 Streptomyces sp. CB04723 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 4806077 30 96.7 31 .............................A CCCGGTTCACCAGGAACATCACAGAAAAGGA 4806138 30 96.7 31 .............................G GACGCCGTGCAGCTCGCCGTACTTTTCCAGC 4806199 21 70.0 0 .....................--------- - Deletion [4806212] 4806220 30 76.7 9 .............C.A.A.A.C...G...G GCTCGGCCA A [4806232] Deletion [4806259] 4806260 30 96.7 31 .............................T CGGTGATCTGGTCTTCGAGGTCTTCGATCTG 4806321 30 96.7 31 .............................T CGGACAAGCGTAAAGAGTGGTTGAAGAAGAA 4806382 30 96.7 31 .............................G ACGTCATCCTCTGGGTGGCGGCGACCGTGCC 4806443 30 100.0 31 .............................. CTGCAACGCACCCTTGGTGCCCCCGACGCAC 4806504 30 96.7 31 .............................A GGCGAGGTTCGGTGCGGCAGGCCAAGGGCTG 4806565 30 100.0 32 .............................. ACGACCGCGATCACAGGGCCCGGACAGATCGG 4806627 30 96.7 31 .............................A CCCTCAATCGTGAATTCCTTGAAAGCGTCCG 4806688 30 96.7 31 .............................T CCTCGGCCAGGTCCAGCGGCTCGGTCTCGGG 4806749 30 96.7 31 ............................T. CTCGACACCTCGCCGAACGCCGCCCAGAACG 4806810 30 96.7 31 .............................G GCCGCCCTGTCCGGGGGGTAAGTGCTGTGAC 4806871 30 96.7 31 ............................A. GCCCGCTCACGCAGCAGGCGTTCGGTCTCCT 4806932 30 96.7 31 .............................A GTAGGCCCACTGGGCCTACGCATGCAACCCT 4806993 30 100.0 31 .............................. CTTCGCTGCGATGGATAAGCCATCACGCGAT 4807054 30 100.0 32 .............................. AGCTCTGGCCCCACATCCGAAAGACAATCGCC 4807116 30 100.0 49 .............................. AGTACGCCCGGAAGCCGCGGTGGCCGCGCAGCGACCGAGGGCTGCCCTG 4807195 30 93.3 31 ................T............T TCGAGCGTGGTGTCCTGACGTTCCGGGCCGA 4807256 30 86.7 31 ...........TGG...............A GCAGGGGCAGGAAGTCCAGGACGGCGTCGCC 4807317 30 66.7 0 ............T.GC.T....CT..GAAT | ========== ====== ====== ====== ============================== ================================================= ================== 22 30 93.4 29 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CGACAAGATCCCGCCCCGCCTCCCCGTGGCGGTGGAAGTCCGTTCGCCGGGCGCCACGGAACCGATCTACGAAGCCCTCGTCGAGTGCACCAACTGTCGCCGTCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCAGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACCGGCGCACCCACCCCGGACGAGGTCGCGGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACAACCCTCGTCGGACAGGTCGGGCCTACCGCACCCCCGGGGCCCACGCCTGCGAAAGGCCGGACCACAGCTCTTCCATCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACTCTGCGGCAGAAGGTGAGATATGTCGGCTTTTCAAGAAGTAAGTAAAAACCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCCGCTCCTGAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGATGCCAACCTGGTGTGGTTGCCCGCCGGGGCCGAGGTCGGGGAGCACCAGGAGGACGTTCTCGACGTGTTCCTCGTCGTTCTGGCGGGCGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGTCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCCTGCTGGACCGGGTCTGCCCCGGATGCGGGCGGCTGTCGCAGGATCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGTCGTGAGCCG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //