Array 1 1142280-1141740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNI010000004.1 Listeria monocytogenes strain 2014L-6088 NODE_1_length_1409536_cov_59.0812_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1142279 29 100.0 36 ............................. AAGCAGCTAGCATGTGAGACGCCATGTTTTTCCCGT 1142214 29 100.0 35 ............................. TACCATAAACGATTCTCAATTTTGTACTTATGAGT 1142150 29 100.0 34 ............................. TTCGTATCCGCAATAAAGAAGCTCGCTCGATCTT 1142087 29 100.0 35 ............................. TTACACTGTAATTGTGAAACCCAAGCGCTCCGCCG 1142023 29 100.0 34 ............................. CAGGTACAGGTTCTTCTTTCTCTTCTTTATCAGA 1141960 29 100.0 35 ............................. ACGATAAGCGTTAGGTGTCCAATGACTGATTTTAT 1141896 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG 1141833 29 100.0 36 ............................. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 1141768 29 79.3 0 A.....A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 97.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCAATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTGTTTTTCAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 482609-484161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNI010000005.1 Listeria monocytogenes strain 2014L-6088 NODE_3_length_487812_cov_64.7958_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 482609 36 100.0 30 .................................... TATGATTTTTGTCCCGGCATCAATTAAACC 482675 36 100.0 29 .................................... TGTACCAACGCTCTCTACTGTTGCATATT 482740 36 100.0 30 .................................... GCTGTTCTCTACGGTGAAGGCGTTTCGAAA 482806 36 100.0 30 .................................... ATATGCTGAATACGATAGACTTTTCCTCTG 482872 36 100.0 30 .................................... AATTATCACCTCCTAGTAACTGTAACTTCG 482938 36 100.0 30 .................................... ACGAGCAATAAAATCCACCATCTGACGAGC 483004 36 100.0 30 .................................... AATATCTGGAGATGGTAAATCGGGAGATAA 483070 36 100.0 30 .................................... TAGTGCAAGTGGTTTTAGAACACTGGCCCA 483136 36 100.0 30 .................................... GCGTTTAACGCTTTCATGAACGGACCACCG 483202 36 100.0 30 .................................... AAACCCTGGTCCGTCCCCCATAAGGCCACC 483268 36 100.0 30 .................................... CTTTATCCAATAAGTATTTAACACCAGAGT 483334 36 100.0 30 .................................... TACCCGAAAAAAATCCAAATCGCCATGACG 483400 36 100.0 30 .................................... TGGAGAAAGAAATGTGTTACTTTTTTCCAT 483466 36 100.0 30 .................................... TCGAGATGACATCATAAAACGATTTCGAGA 483532 36 100.0 30 .................................... GCGTGATGATACAACAATTAAAACGATAAT 483598 36 100.0 30 .................................... GCGTGATGATACAACAATTAAAACGATAAT 483664 36 100.0 30 .................................... GCGTGATGATACAACAATTAAAACGATAAT 483730 36 100.0 30 .................................... GCGTGATGATACAACAATTAAAACGATAAT 483796 36 100.0 30 .................................... GTGCGCGAATGTCTCCATGGTGAATTTAAT 483862 36 100.0 30 .................................... TCCACTGTAACGCTGGACGGGCTTGTTTCA 483928 36 100.0 30 .................................... TCGTCCCCCTCTTCAATGAGGGGCGGTTCA 483994 36 100.0 30 .................................... TGTTAATGGATGATATTTAACTTGAACAAC 484060 36 100.0 30 .................................... TTCTGTTCGGGGTATTGTAGCAAGAGTTCT 484126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGCACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCGCATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCAACCATGAAAAAAAACTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCAAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //