Array 1 1-1966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYQ010000151.1 Eggerthella lenta strain 1001713B170221_170320_D6 NODE_532_length_16415_cov_38.0043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1 33 100.0 33 ................................. GTCAACGCCGGTGGCACGTGGCCTGCGTCCCTG 67 33 100.0 32 ................................. ACGCGGCTGCCGTCCTCCATGCGCGCGTCCAT 132 33 100.0 33 ................................. GAGACCGAAAGCCGCGATTCGTCGAGCATCGTC 198 33 100.0 35 ................................. GCTTTCGTCTGCTACCTGCTCGTCAGGGATGCGCG 266 33 100.0 33 ................................. CGCCTGCTTTGCAGGGTCTTGCAGATCGGCGGT 332 33 100.0 35 ................................. TCCTTGACGTAGAGATAGCGAAACTTGCCGTAACG 400 33 100.0 33 ................................. AACTTTATCACACTGTCTCGGCTCGATAGCTCC 466 33 100.0 34 ................................. AAGCGCGGGATGCTCGTTGATCTTGTCTACTACA 533 33 100.0 34 ................................. CGGCATGGACGGCGATGATCTTGTTGAGGGCGTG 600 33 100.0 33 ................................. GGATGCGAACCAGAAGAGCTCTACGGTCTCAAG 666 33 100.0 34 ................................. CATACTGTGAAAGGGGTATAGCCAGGTTCGACGG 733 33 100.0 34 ................................. CGTCTGGTGATCTCGTCCATTCGATCTGCTCCCT 800 33 100.0 33 ................................. CGTATCCCAGTACTACCCTGCGGTCGCTGGCGG 866 33 100.0 33 ................................. TGCCATGCCCTGACCCCTTCAACGGTGGACATC 932 33 100.0 33 ................................. CGACCTTGCGCGAGACGATGCCCGAACCGTCGG 998 33 100.0 35 ................................. TCTCCGCTTTCGTCTCGCGGCCATTCCATCCCCGG 1066 33 100.0 34 ................................. CACGCACCCACCATGTGATAGCTGGTCGATCTGT 1133 33 100.0 35 ................................. ACGTTGACCTACGCTGAGAACATGCAGGACAATTC 1201 33 100.0 34 ................................. GTCTCTGCTGGAAGCCAATCGGTCTACATCGAAA 1268 33 100.0 35 ................................. GGGCATATCGGCATAGCATGGTACGAGGAAGCCGA 1336 33 100.0 33 ................................. AACAGAATGTCCTCGTCGTGGGCGCTGAAGCCG 1402 33 97.0 33 .....................A........... TGACGAGTATCGCCTATGGCTTGAAAGCGAGGT 1468 33 100.0 33 ................................. AAGCACACCACCAAGCAGACGCGCAGCCTCATA 1534 33 100.0 34 ................................. GTCATCTAGGACGTTGCCGGAAACGACATCCTGC 1601 33 100.0 34 ................................. GTGCCTCACCGGCCGGCACGTACGCTCGCGCACG 1668 33 100.0 34 ................................. CAGAACTTCGCGATGGCGAAGCAGAGCGGCTACG 1735 33 100.0 35 ................................. GTCCCCGTCGGCGGCTTGGTGTCCATGCTGATGAT 1803 33 100.0 33 ................................. TCGTCCTCGCTGAGGAAGTAGGGGTCGAGCGAG 1869 33 100.0 32 ................................. AAACGGTTGAACGATTTGCGGACGCTGGCGAG 1934 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 30 33 99.8 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : | # Right flank : CTGTTCGGGTTGGCTGGCAAGCTGAACGCTGACACGTCATCGTTCAGCTTGCGGGCGCGCGGGTTGAAGTCGCGAGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCTCAAACGAGGGGGTAACCGATCCTTGCCGTCGCTTCCTATCGAGACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGCCTGCGCCGAGTTGTGAAAGGCGCAGGCGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAGCTCAAACGTCGTGCAGTCCACCAGCCCGCGATTCGTCAGCCGCAGCTCGGGCAGGCATGCCAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAGGCATGCACCTTCTCGCTCATCGTCACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1081-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYQ010000150.1 Eggerthella lenta strain 1001713B170221_170320_D6 NODE_531_length_1124_cov_25.5224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1080 33 100.0 34 ................................. ATGCCCGGTGACGCATCTCCCATCATCTCCGGCA 1013 33 100.0 33 ................................. AGGAACGTGAAGCCGCGCGTGAGCTTCGTCATG 947 33 100.0 33 ................................. GAGACGGTCGCCCGATCGTCCGATGACGGGGAG 881 33 100.0 33 ................................. ATCACTCGCAGCATCTTGGGAAACCTCCTTTTC 815 33 100.0 34 ................................. CGTCGCGTGGTGCAGGGCGCGCAAACGCTGTCCA 748 33 100.0 35 ................................. AGCTCCAATACCATTTTAAATTTTACTTCCAACGG 680 33 100.0 38 ................................. AACGAACGCTCCGACATTGACGGCATCTCCCGTAGGGA 609 33 100.0 35 ................................. TCCAGCGCGCTCATGATGGTGGCCCAGTCCATGGC 541 33 100.0 33 ................................. TTCGCAGCCGCGCCTTTCGTGGCCATGTCTCGC 475 33 97.0 34 ......T.......................... ACTCCGAGCGACTCGCCCGTGCGGGCGCTGCCGA 408 33 100.0 34 ................................. TTGGCCGCTCATCGGTACAGACCAATCGCAGGAA 341 33 100.0 33 ................................. GTTGTCAAGCTCTGCTTCGCCTCCCAGTCAATG 275 33 100.0 33 ................................. GGCCAGCAGCGCGACGCAGCGCCTCATGGCGAC 209 33 100.0 33 ................................. CTGTAATGCCTGATCTGTTTGCCGATGTACTCA 143 33 100.0 33 ................................. GAGAGCGCGGAGCATATGACGCAGTGCGTCTGC 77 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 16 33 99.8 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : CACTATATGTTGATCGAAGCAGTAAATTTGCACATAATATTGC # Right flank : TGTCAACGCCGGTGGCACGTGGCCTGCGTCCCTGGTCACTCCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //