Array 1 214907-216320 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLQ01000001.1 Neisseria lactamica strain M37136 M37136_HUY4067A183_cleaned_ctg_8721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 214907 32 100.0 35 ................................ TTTTCCTTTAAGTGAGTTAAAAAAATGTTGTGGCC 214974 32 100.0 35 ................................ TGTGTCAATGCAGTTGTTACTATTTAGACAAGGAA 215041 32 100.0 33 ................................ TGCTGCGGCTTGCCGCCCATTACGGCAACTTTG 215106 32 96.9 33 C............................... CCTTAAAACATCCTTATCCACCCTTGTGTCCGT 215171 32 100.0 34 ................................ TTCTCTTTTTGCCCTAATACCTCCGCCAACATTG 215237 32 100.0 34 ................................ CAAATATGCCAGGCGAGCATGATATGGAACATCA 215303 32 100.0 33 ................................ TTTAGCCTGTCTTACCTTCTCCCAAAGAGCTAT 215368 32 100.0 34 ................................ TCTTGTTCTTATTGGAGAATTTTCAAAAAATCAG 215434 32 100.0 34 ................................ AGTACCTTTAGGGATTTGTTTTTATTTCGCTCCC 215500 32 100.0 34 ................................ AAATCGGGGGCGGGGTCGGTGTTGGGGCGCGTGC 215566 32 100.0 33 ................................ AGCGGCAAACCGAAAGTTTCATACTCTTTCGCG 215631 32 100.0 33 ................................ AGATTATAGGGGGCATAAATTCAAGTCGGTTAA 215696 32 100.0 33 ................................ TTGACATATCGGATTTAAATTTAAAAGACCCTG 215761 32 100.0 35 ................................ AAGCATTGGGAAATGCGGCTGACGGATTTTTTTCA 215828 32 100.0 33 ................................ CTGGGCATTAACCTCCACTATCTACCAATCAAG 215893 32 100.0 35 ................................ TGTACCCCCCCTGTTAGATAAGGGGGGAAGATTTG 215960 32 100.0 33 ................................ AGAACAACAAAGGAGGATTTGAACAATTAATAA 216025 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 216091 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 216158 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 216224 32 100.0 33 ................................ ATTAAAAAACTTTTTTCGCGGTATGCTTCGGGT 216289 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ =================================== ================== 22 32 99.6 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCTGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCCTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATATTGCTTTTTATAACAAAGACGGTACAGAAATTCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4238-3674 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLQ01000004.1 Neisseria lactamica strain M37136 M37136_HUY4067A183_cleaned_ctg_8727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4237 36 100.0 30 .................................... AACAAATCTTTATTTCACAAGCAGTTCGAT 4171 36 100.0 30 .................................... TCTTTTTTTTCTTCTTCGGGCATCTCTCCG 4105 36 100.0 30 .................................... CATCGCCGGCGGAAAAATCAAATTAAGCCT 4039 36 100.0 30 .................................... CGCAGCCGTAGGCAGGCTGTTTCAGCGGTA 3973 36 100.0 30 .................................... TACAAATCTTTCTGGACGTCCTCCCCCTGC 3907 36 100.0 30 .................................... ATTTGCAAGCTAACCTGACCACAATCAAAA 3841 36 100.0 30 .................................... GCGAATTAACATCATAAAGTCATTGACAAG 3775 36 100.0 30 .................................... AAATTCAATCTGACGCAATTCTAGACGCAC 3709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGATGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAAGTACCTACGCTAATAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //