Array 1 8829-10793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKY01000014.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8829 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8890 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 8951 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 9012 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 9073 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9134 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9195 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9257 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9318 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9379 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9440 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9501 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9562 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9623 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9684 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9745 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9806 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 9867 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 9928 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 9989 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 10050 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10112 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10215 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10276 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10337 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10398 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10459 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10520 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10581 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10642 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10703 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10764 29 96.6 0 A............................ | A [10790] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5327-6636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKY01000146.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5327 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5388 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5449 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5510 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5571 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5632 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5693 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5754 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5815 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5876 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 5937 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 5998 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6059 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6121 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6182 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6243 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6304 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6365 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6426 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6487 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6548 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6609 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //