Array 1 2675-2037 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRN01000017.1 Lactobacillus crispatus strain UMNLC24 SNF2W1B4M3S33124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2674 29 100.0 32 ............................. GTCAATGCAATTACTTATAAAGAAGTATTTCC 2613 29 96.6 32 ............................C GACCGACATTTCTTTTTTAACGCCTTCAAGTG 2552 29 96.6 32 ............................C TCCTCGTTAGCTCTTTGATCCTTTCGGGATCA 2491 29 100.0 32 ............................. CATTCAAAAATTTATGATGAAGCTAAATTCAA 2430 29 96.6 32 ............................C CAAAACGTCCAAACCAACTTGCAAATGTTTAG 2369 29 96.6 32 ............................C CAAGCTGAACATTTTGTTGATTATAAGTGTCA 2308 29 100.0 32 ............................. AAAAGTGGGCGATTGGCTTACTCGCTATTGAG 2247 29 100.0 32 ............................. CAATCACTGGTGAAACTTATGTCACTGATCAA 2186 29 100.0 32 ............................. GTTGGTGCATTAATGGAAGATGCATATTTAGA 2125 29 96.6 32 ............................C AAGGCTGTCAATATCACCGTTCCAACGTGGCT 2064 28 86.2 0 ..............C.......C-...T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AAAGCACTATTGAGTGATAAGAAGTTTGATCAAGCTGTTTTTTATCTGATGGATAATTTGAATTTATTAAAACAATCATTAAGCGCTGATATGGATTATAGTCAATTATTTGAAAAACTGCGAAAGTTAAATAAAAAATTAAAGGTATTTCTAAGCCTTTTCATTATATGCCTAAAAAAACACGTACTATCAATCAGGGAAGGAGAGCAATTAATGCCATAATTAGCAATATTATTGGTGCTGATTGTAAAAAATTACAAAATTTGCAAGATGAACAAATCTTTCAGATGTATCTTGAAGCTAAGCTGCTAAATCAAAATTGGATGAAGCTTAACGATGATCGGGGAGTTAGTCAACGAATCAGAAAAAGAGAATCTTATTTTATTCAATTAACTTTGAATATCTAATTACATAAATTTTGAAAAGTGAGTCTTCTTAAAAGTGATTGAAAATGTTATGATTTGAATTAAGGATCATTGATATAGCGGGATTTGTTTAGT # Right flank : ACTCTTGTATCAAGGGATTTCTCTAAAAATAAAAAAATAGATAATCGATTAACTTAATCATTCTAAAAATCGTGCTTGATCTAACTTCCAAACATCGTTATACTAAAGAAAGTGTTGCATCGAGAATCCTTATTCACGATGCCCGATCAACAGAAATTTTAGCAAACCTCTTAAAGGCGACTCGCTTTTAGGAGGTTTTGTTTTTTTATTGCCAAACAAAAAAGATGACAAAAATGCTGTAATCATTCACAATAGGGAACAACAAATTGTTGAATTAGAGGATTTAATTATGAAAACAGTAAAGAATATTATTATCGGCTTTGGTAAAGGCGGCAAAACGCTAGCTAAATTTTTAGCGAAAAAGGGCGAAGAAGTCCTAGTCATTGAAAAATCTAATCAAATGTATGGTGGTACTTGCATTAATATTGCTTGTCTGCCATCTAAACGCTTAATTATCGAAGCGGGTAATGGCGTGGATTTCGTAGATGCAGTTAATGGTA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17151-17425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRN01000020.1 Lactobacillus crispatus strain UMNLC24 SNF2W1B4M3S33127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 17151 28 100.0 34 ............................ TCGCACAGGCTGTTAAGACTTTGCAAACCGATCA 17213 28 100.0 33 ............................ CAAGAAACGTGCCGAGCTTAAGTCCAAACAGGC 17274 28 100.0 34 ............................ TGTAATTGTTGTATCGTCGTGTGTATAACTAGTG 17336 28 100.0 33 ............................ CTCAGCACCGTGAGTGATTCCGCCATTTCCGTA 17397 28 85.7 0 .......................A.ATA | C [17419] ========== ====== ====== ====== ============================ ================================== ================== 5 28 97.1 34 GTATTCTCCACACATGTGGAGGTGATCC # Left flank : CAAGACATAAATTACCAACGATCAATACTCTTAGATACATTAAATATTTGGACCGTATTGATTTTACTTTATTTGATTTAAAAAATTATTTTGAAGGTAATAAAAACACGCCGCTTGCTAGAGCTTATAAAAATGAAGTGACTAATCTATGGTTATCTCAATTTTATGATTTTCCATCCTTTGTAAAAAAGATGCAATTAGGACGTTTTGTTGATAAAAAATATAACGTTTTGAACATTGCTAGTCGGCAAAATGAAATCATTAAAAAATTTCCTGCAAAATCAGAATTATCTAATTCTATGCCTATATATGCTGACTCCCTGATTTCTTTAGTAAAAGACAATATAATTTAATGAATGACCAGGCTGAAATAATTTGCAAGCACTTTGTGTAGGTTCTTTTTTATATCGATAGATATTAAAGAAACACTTTGTGTTAAAAGCAATAAAAAATGCTATGATTTTAGGTAGGGATTGTTGCTGTAGCGGGATTCATTTAGT # Right flank : AGCTGCTCTGAAAAATATTTTCTATAGAGTGACTGCTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACACATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 20153-22441 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRN01000020.1 Lactobacillus crispatus strain UMNLC24 SNF2W1B4M3S33127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20153 29 100.0 32 ............................. ACTTTGTAAATTAATATCTCTATTAAGTCTAG 20214 29 100.0 32 ............................. CCAATTTACGATTGGATCAATAAGAAATGGTA 20275 29 96.6 32 ............................C TATTTTAGGCGCTTATACAGCGCAAAATTATG 20336 29 100.0 32 ............................. ATTATAAGAAGTATTTTTATTAAAATCATCGG 20397 29 100.0 32 ............................. GTCAATGATTTTATTCTCAAAATCAATATCAG 20458 29 100.0 32 ............................. ATAATGGTTTACCAGATACTCTAAAAAGTTCT 20519 29 96.6 32 ............................C TAAGTTTGTCAAATTCACTATTTTTACCAATT 20580 29 96.6 32 ............................C AAAATATTTAGCAGCATGTCCAGAAAATGCTT 20641 29 100.0 32 ............................. AATTTCATTAGCAAGCGGTCTTCCGTTTCTAT 20702 29 100.0 32 ............................. ATTGTTGTGAGTTTGCATGCCATCTGGTACTA 20763 29 100.0 32 ............................. ATCCTTGTTATACTGTTCAATGTAAGTTAAAT 20824 29 100.0 32 ............................. ATATCTACTCGGCTGGAAACAATCCAAACCGG 20885 29 96.6 32 ............................C AATTCTTCCAGTAACCGGCGCAGCAACATAAG 20946 29 100.0 32 ............................. AACTCAATTAATAATGGTTTGTTAACTCCTTA 21007 29 100.0 32 ............................. ACCACTAAATGTTGGTTAGCAAGTGGTGTAAA 21068 29 100.0 32 ............................. CAGAAACAAGGTTCAATAGATGTATACACCTA 21129 29 100.0 32 ............................. GCCGTTCTTTATTGCAGTAAGGATTTAATTTG 21190 29 96.6 32 ............................C CAAATCGTTGACGGCAATTTAAGTGTGATTGG 21251 29 100.0 32 ............................. AAGTTAACTTAACATCACTATCAAAAACATCT 21312 29 100.0 32 ............................. GACGCCCAGTGGAGAGCCCTCAATTTTAGTCG 21373 29 100.0 32 ............................. ACTGCAATCTTGTTGTCTTGATCTTTGTTAGC 21434 29 100.0 33 ............................. GATGTAAGAGTTCTAGTGGCCTACATTGACGAA 21496 29 100.0 32 ............................. ACTCGGCTTATTAAAATCATTCAGATACGTCA 21557 29 100.0 32 ............................. GTGTAAGGAGGTTGTTTACTAATGACTTTGGC 21618 29 100.0 32 ............................. CACGGTTGAAATGGCTAAGCAACTAGCGATGA 21679 29 100.0 32 ............................. GTATGAAGTAGTGCCCTGCAGATATGTAATAG 21740 29 100.0 32 ............................. GAGTAAGGCAGAGAGAGCACAGTACTTAGCCC 21801 29 100.0 32 ............................. CAAATACGCTATTTTTAGAAAATGGTGTGACA 21862 29 96.6 32 ............................C ATGTGTGAGCCACCTTTGCAATAGAACTTACC 21923 29 100.0 33 ............................. AACCATTTTTGTTGTGAAGGGGAATCCCGAACA 21985 29 100.0 32 ............................. AAGTTAACTGGTGGTACTTCATATTTTTGGAA 22046 29 96.6 32 ............................C TAATCCACAGCCTGCTGGTGGTGGTCAAGATT 22107 29 100.0 32 ............................. CACTTGCTCTTAATGCCAGACAGATTCTCTAA 22168 29 96.6 32 ............................C ACCAATATTAGCTGTTTTACCGTTTAAACCAG 22229 29 96.6 32 ............................C TAGCAGCCGCAATCAACCAGCACTGTAGTAAA 22290 29 100.0 32 ............................. AGCTTGCTTTGTAGCTTGTAACGTTTTTTCGC 22351 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 22412 29 82.8 0 ...........AC....T......T.A.. | A [22433] ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATGTTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43917-44617 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRN01000020.1 Lactobacillus crispatus strain UMNLC24 SNF2W1B4M3S33127, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43917 29 100.0 32 ............................. ACTTGATCGCAATTTATTTTTATATCCGTCTG 43978 29 100.0 32 ............................. AATTGCGTTTGGTTCCGCTCCGAACTTACCTT 44039 29 100.0 32 ............................. ATAACCACCTAAAGTACCAGTACCTTCAACAC 44100 29 100.0 32 ............................. AGATTAAATCCTTATCAGGTCGTTGTATTGGG 44161 29 100.0 32 ............................. TTCTTTCATTTAAATACCTCCTGTTTTGCATA 44222 29 100.0 32 ............................. TTAATCCTGATTGGGTAGCGGATATTCATCCA 44283 29 100.0 32 ............................. ATCCTGCTTGCTTGGGCGCTTAATTCTCTTGA 44344 29 100.0 33 ............................. AATATCCGCCTATTCCAAACTGCCAAACATACA 44406 29 96.6 32 ............................C TATTCATTTAAAGCAAGGTGCTAACTTATTGC 44467 29 100.0 32 ............................. ACTCAAAAAGATGTTATATACACAATGGAATA 44528 29 100.0 32 ............................. GGTAGGGGTGGTCATATACTTTATGTGTGAGT 44589 29 86.2 0 ....................T..AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TTTGCGGATGTTTAGAAAAAGCGGTTAATTCATGAAGCAATTGAATAAAACCAGACAGTAGAATTCGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATATAACCCCCTAAGCTCAAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAAGTGTCCACATTCTTCGAAGATACTATTGAAAACTTAAGTAAAACTGCCAGTTTTGTATACGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATATTTAGGGAGACAAGAAAATTCTGTTGTTGTGTGACTAATGGGATTAAAATAGATACAATAGTAATGACAAAGTGATGAAATTTTGGGATCTATCGTTTTGTGATTGTTGTTATATCAGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGAAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGTACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGTGCAAAGAAAACACGGAAAAGATTAATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTGCTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //