Array 1 274044-277499 **** Predicted by CRISPRDetect 2.4 *** >NC_015387.1 Marinithermus hydrothermalis DSM 14884, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 274044 37 100.0 39 ..................................... CAGGCGCCTACCACGGGCCGGTCCTCGTGGTCTGGGGCA 274120 37 100.0 35 ..................................... ACGAGGCCGCGAGCCGCCTCCGCATGCAGCTCGAG 274192 37 100.0 35 ..................................... GGCAAAACCGGGATGGTAGCTACACCCTACCCACC 274264 37 100.0 36 ..................................... TCATGAGGGAGGGGGAGAGTAGATGCGGTACGCGCT 274337 37 100.0 35 ..................................... GCGGGGGTCGCGCACCGGGCGGACGCGGGGGACCT 274409 37 100.0 36 ..................................... ATCGAGGGCACCGCGTACACGACCCGACCCATCCGG 274482 37 100.0 36 ..................................... TCGACCCGCAACGGCAACGCCCCGTCGTACGTGATG 274555 37 100.0 34 ..................................... ACCAGGACCTGCACCTCCCCCCGTGCGTACGCTT 274626 37 100.0 34 ..................................... GGTAACGCTGTAATGAACTTGGATCTTTACGCGA 274697 37 100.0 34 ..................................... GCGTTAGGTTTGGTTTTGGCGGGGGTCCTCACGG 274768 37 100.0 35 ..................................... CGCTCTAGAATCGATACTGTAAACCTCGTCAATTG 274840 37 100.0 35 ..................................... CTGGATGACCGCGCGGCGCTCACCGCGTTGTGCGG 274912 37 100.0 36 ..................................... AGGCGTGGGGGGGTGGGGCTTGCGCTGGTGTATCGC 274985 37 100.0 35 ..................................... TTGAGGGCTTCCCACACGCTCATGCCTGGCCTCCC 275057 37 100.0 37 ..................................... ATCATGCAGCACCCCGACTGGCGTAAGTACCTGGCGT 275131 37 100.0 34 ..................................... GTGCGGGATCGCCTCATGGCCCTCTCCGGGGAGC 275202 37 100.0 35 ..................................... ATACCCAGTCTAAACTCACGTGACTTGACATACAG 275274 37 100.0 37 ..................................... GTGTGTTTGTGGGGGAATTCAATCTCCAAGGAGACGG 275348 37 100.0 37 ..................................... CCCGCCGCGTTTGCCACGCGGCCAAACGTCCTGGCGA 275422 37 100.0 36 ..................................... GCGCTTGGACGGGCGGGGGCCTTGACGGGCAGGGGC 275495 37 100.0 34 ..................................... ACGGGGTGCCCGCGCACGTGCCCAGCCTGAGCGA 275566 37 100.0 35 ..................................... CTTGTACCGAGTCCAAGCGTTGATGCTCATGGCAT 275638 37 100.0 36 ..................................... CTGCCGGCTCAGCTGGGGGGCGGCGAAAAGAATTAC 275711 37 100.0 35 ..................................... AAAGCGCACGCCCGCACGCGCGGGTTTCGGAACCG 275783 37 100.0 36 ..................................... TTGTACCGAGTCCAAGCGTTGATGCTCATGGCATAC 275856 37 100.0 36 ..................................... GGGAGCCTTGGCACCCGACCTCCTCCCCCACGAAGA 275929 37 100.0 35 ..................................... AGGGCCTGCGCGTCGTACGCCTCCAGCTTGGGTTT 276001 37 100.0 39 ..................................... GCGCTCAGTCCTTTGCATGCTATACCTCACCTCCACCCT 276077 37 100.0 36 ..................................... CCGGGGCCTTGACGGGCACGGGCGAGCCCCGAGCCC 276150 37 100.0 37 ..................................... ACGGAGATCGCCCAACAGTACGGTTTGGAGTACGAGT 276224 37 100.0 37 ..................................... GTCCGCCAGGTGCGGCGCGACGCGGTCCAGGACCCAC 276298 37 100.0 35 ..................................... TCGTGTTTGCACCGAGTATAACGTTTTGGGTCCTT 276370 37 100.0 36 ..................................... CTCAGGCGCGAGCACGGCAGGCCTCCAGCAGCTCGA 276443 37 100.0 36 ..................................... GGTGAGTCCGCTACCGAGCGGGATGTGCTTGCCTAC 276516 37 100.0 37 ..................................... ACGGCGCTGCTCGAGGTGCAGGACCGGTTGAACCAGT 276590 37 100.0 36 ..................................... ATCGAGCGGGGGTACCTGTCCCCCATCACGTACTAC 276663 37 100.0 36 ..................................... TGCCCCTCGAGCACCATGCGCTGGTAGGCGCGCCAC 276736 37 100.0 34 ..................................... TCCTTGCGGGGGCGCCGGTACCTCGAGGCGCTCT 276807 37 100.0 34 ..................................... TGCCATTGCCCGCTGGGGTGGCGTAGGTGCCGGT 276878 37 100.0 36 ..................................... CGGGGTGTCAACGAGCAGGCGAAGCGGCTTTTTAAG 276951 37 100.0 38 ..................................... CCTTCCCGTACCTCGTCGGGTACGCCCGCTTGCCCCAC 277026 37 100.0 36 ..................................... TTCACGCCGTGCGCGTCCTGCACGAGAAGCACGCGG 277099 37 100.0 37 ..................................... GCCCAGCGGCGCAGCGTGGGCTCGCTCACCCCGAGGG 277173 37 100.0 36 ..................................... TTCACGCCGTGCGCGTCCTGCACGAGAAGCACGCGG 277246 37 100.0 35 ..................................... CCCTAGGTTGCGGTCGGTAAAAAAGACGCTCAAGC 277318 37 100.0 36 ..................................... AGGGTTGGTGATCGTTTTGAGGTACGCACGTAAGCG 277391 37 100.0 35 ..................................... TCGAGCCGCGCGAGCTCCCCCTCCACCACGTTCAC 277463 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 48 37 100.0 36 GTTGCACCGGCCCTTCGGGGCCGGTGAGGATTGAAAC # Left flank : CATTCACGCCGAGGTGAGTCTTGAAACGACTGGATGTACTGGTAACCTACGATGTGGAAACCACGACCCTCGAGGGGAGGTCGCGACTGCGGCGGGTAGCTCAGGTTTGTAAGAACTTCGGTCAACGGGTGCAGTTTTCCGTGTTTGAGCTTAGGGTAACGGAGGCCCAGCTTGAGGAGTTTGAGGCGAAACTGCTTGACATCATAGATCCCGAGAACGACAGCCTCAGGATCTATGTGTTACACGGGGGGCGTGAGCGGAGTTTACGTCAGTATGGCGTAGACCGCTACATCGACTTCGATGACCCTTTGGTTGTGTAGCGCGAACCCTTAGTGGGAGTGAAAATCCTGGGAGGTTCGCGATTCGGGGTTTGAGCCCGTGGGGACATTGAAAACTGGGTCCCGGGAATTATTGCTCGGGGTTATAGTGAAGGTGCACGAAGTAGGTTCGCGATTTTGCGATCAACGACCCTGATGTTTACGCTGTATATAGCGTATGCC # Right flank : CACATAGCGCCTGAGTTTCTTGCGTGCGAGTACGCCTTCCAGCTCAGCAAAGAGGGGCGGCGAGATCAGCAAGTTGTAAAACCCAGCCCGCCATGCCGTGAGCAGCCGCCCCGGGTTGCTTTCTCTTTTGATCAGCGCGCTGACGTAGACGTTGGTGTCAAGAACCAGCCTCAACGCTTGCGCCCTTTAGAGCGTGAAGCACGCCGCACCTCTTGGACAGCTTCGAGGGCGATCCGCATAGCCTCTTCTTCGGACAAGTCGGCGTTTCGCTCTGATTGCTCTTGCCACAGCCGATCGAGTTCGCGGAAGGCCAACTCCCGACGAATAAGCCAGCGGAGCGCTTCAATGCGCGAGGTGCGCATGCTCCGCCTCAGCTTCTCCAAGCCCTCGAAGACGTCGTCCGGCACGGTTAGTTGCTTCACCGCCCCCATTATACGGGCTCCCCCCCTTCCGCTACGTTCCCAGCCTTACGCACCAAGCCGCCTCACCCCCTCGTGTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCTTCGGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 2 959694-963140 **** Predicted by CRISPRDetect 2.4 *** >NC_015387.1 Marinithermus hydrothermalis DSM 14884, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 959694 29 100.0 32 ............................. AGTAACGTTTGGGGCGTGGCTACGTGGTCTAA 959755 29 100.0 32 ............................. CCTGGGCCGCACCGATCCAGGCCGCCCAAGCG 959816 29 100.0 32 ............................. AGAAGGCGCAAACGCAAGAAAACCCCGTATAA 959877 29 100.0 32 ............................. TACCTGGACCCACCCCAAACACCCGAAACGAA 959938 29 100.0 32 ............................. GGGGGGTCTTTCATGAATGGCGCTATGGGTTT 959999 29 100.0 32 ............................. CCTTCACTAACCAGAAAAACGAAGAAAAAAGC 960060 29 100.0 33 ............................. TGGCTGCGGCGCGTGGCTCACGCGTGCGGGGTG 960122 29 100.0 32 ............................. GCGCGGCTCGAGCCCGTCCAGCACGCAAAACC 960183 29 100.0 32 ............................. CCCCGCTCGAGCTGCCGGACCTCCTCCTCACT 960244 29 100.0 32 ............................. AGATTGGGGAAACCGCTAACGTCCAGGAAACC 960305 29 100.0 32 ............................. TCCACGGTCTCCTCCAGGACCGCGCCCCGGTC 960366 29 100.0 32 ............................. TCTTCGTGGAGGCGGGTTGGGCTGAACCCATT 960427 29 100.0 31 ............................. GCCAAGTGGGAACGCAAACCCTAATATTTAT 960487 29 96.6 32 ............................T CGGCCTTATCCGTGTTGGACGTGGGGGTAATC 960548 29 100.0 32 ............................. ATCAGCACCTAAGAGTGAGGTGATTAGTAATG 960609 29 96.6 32 ............................A GAGGGACTACGCGAGGCGCAAAACCTGCTCTC 960670 29 100.0 32 ............................. CTAGAGGTCAAGCCCATCGCGGGGTGGCTAGA 960731 29 100.0 32 ............................. TGCCGGCTCGCTCGGGGTGGACTCGTACCTCG 960792 29 100.0 32 ............................. TATACCCTAGTGGATATCGCGCAACTGGACAC 960853 29 96.6 32 ............................C TCTAGCCCCTGCAACACAAAGCCCCGCCCCCA 960914 29 96.6 32 ............................A GCTCACGCCCCTGGAGCGCGTGACGTACTACA 960975 29 96.6 33 ............................A GGACCTCCTCGCCCGTCTCCGCGTCCACGGTTC 961037 29 100.0 32 ............................. AACGAGCACCGCGCCGCGATCATCCTGAACGC 961098 29 96.6 32 ............................T CACGCCGAACCTCAGCAAGAACCGGGACTTCC 961159 29 100.0 32 ............................. CTTGCCCGCGCGCGTGAGGTTGAGGCTATCGA 961220 29 100.0 32 ............................. AACCCAGTTCCGCTCATCAAGCGCACTGAGGT 961281 29 96.6 32 ............................T TGCTCCACAGGCCGAGCAGCGTGCGGGATTGC 961342 29 100.0 32 ............................. AGGGTGCCGCTTACCTACAAGAGCGTCAAGGT 961403 29 100.0 32 ............................. TTTAGTCTCGAGCTCGCTGCTCCGCGCCTCAG 961464 29 100.0 32 ............................. CACAACGTAACGCCCGGAATGTGCCTGAGGGG 961525 29 100.0 32 ............................. CTGGAGCGCCATTGCCTCGCCGATGCGGGGGC 961586 29 100.0 32 ............................. GGACATAACCCTAACCTCACGCCCGAGAGCCC 961647 29 100.0 32 ............................. GGTAGCCCGGTACTCATGCCATGCTTTTTGAA 961708 29 100.0 32 ............................. ATCTTCCCCAAGTAACGCGGATGAGGTACCCC 961769 29 100.0 32 ............................. TAACGCGTGAAGTACTTGACGCGCTTTAGTCC 961830 29 100.0 32 ............................. CATACAATAAATCCGCATACGCACTTATTCCG 961891 29 96.6 32 ............................A GAGTATCCGCAAGCACGTCAAAAGCAAAAGAG 961952 29 100.0 32 ............................. ACCTCACCCCGCTAGAGATTCAGTCCTGGGCC 962013 29 96.6 32 ............................A AGTGGGAGGAAGCCAAAGCCACCAGGGCCGTT 962074 29 100.0 32 ............................. CCCTCCTGGACTGGTTACGGCAGGACCCGCCC 962135 29 100.0 32 ............................. TCTGCGGAGTCAGAGCCGATGGCCCGGGCCAT 962196 29 100.0 33 ............................. AACGCCTTGAGCACCACGCCGAACGCGTCCGTA 962258 29 100.0 32 ............................. ACGTGAACGATCTGCTCAGCGCGTGGGCGCTC 962319 29 100.0 32 ............................. GGATCGAAATGGACAAGGCCGGATGGGCGATA 962380 29 100.0 32 ............................. GTCCAGATAGGCGAGGTACCTGTGTTCCCCGT 962441 29 100.0 32 ............................. GAATACCATACACGGGCGATGAAATAAACCGC 962502 29 100.0 32 ............................. TCTACGAATTATTATGCGAAGAACTTCCGCCC 962563 29 100.0 32 ............................. TTGAGGGGTTGTAGGCCCAGGTTGCGTATTGA 962624 29 100.0 32 ............................. CTGGGAGCCGTCAGCGGGCTCTCCATCGGTTA 962685 29 100.0 32 ............................. CCCCTGCGGGAGGTCACGGTACGTGTGCGCTC 962746 29 96.6 32 ............................A GCCGTCCGTGCGTTCCTCATCCGCGAACTCCA 962807 29 100.0 32 ............................. TACCGGAATGGCCGCTTAATGTCCGGGTTTTC 962868 29 100.0 32 ............................. AAAAAAGTCGTGAGCACGCCCGTCACGGGCAG 962929 29 100.0 32 ............................. TTCGCCACGCCGCGCACCATGCGCCGCGGGGC 962990 29 100.0 32 ............................. GATAATCTGCTACAATTCTACGCCATGAATAC 963051 29 100.0 32 ............................. ATGCTGAATGGGCATATACACGCGGTTTTGAC 963112 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.4 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GAGGAGAAAGATCTGGTAGAGGGCGACCCCACCTACCCCGGAGGGCTCTGGGATCTAGAGGGCGAGGTAGAGGGGGGCGTAGCTTATGGTGGTGATGATTCTAGAGAAAGTGCCGAGGAGCCTTAGGGGAGAGCTCACCCGTTGGCTTGTGGAGGTGGACACAGGTGTTTTCGTAGGACGGGTGAGTGCTATGGTGCGAGACCTCCTCTGGGAGAAGGTAGTGGAGAAAGCAGGGGAGGGTCGTTGCGCCATGGCGTACCGGACCAATAACGAGCAGGGATTCGCGCTTAAGTTGCACGGTTATCAAGACCGGTCCCTACGAGACTTTGATGGTATAGTGCTGGTGGCAGTGCAGAACGCGAAAGCTTTGCGCAAAGCAAGGAAGCTAAAGCGTCTTCAGGAGCGGATGCGCGAGGATCTTGACAACACGACCCTAGAGTAGTGCCCCTGGTAAACACATAGAGGGGGAGGAGTAAGGGTTTGTGCTGTCCAGGACATCT # Right flank : GTCCGCCAGGCGCGCCTCGATCGACTCCGCTTCGTAGGCGCGCTTGCGGGACCTTCCTTGGGGAAGGCGAACCTCTGGGCACGCGGAGTTAAAGGATGCCCAGGATGAGCGAACCTATTCCCCGCGCGATGGCGTCGCTGGTGTTTTGGAAGGGGATCCCGGTCGTGCCAAGCGAGCGGCCAGCTCTGGGGATGCCCCTCCGGTTCGTGCGGCTGGGCTAGGGGTGTAGAATTCGGTCCGTATGGAGGCGCTGGGCCTGTACCGTCGCGCGCGAGCGCTGGGTTTACGCCCCGCTCTGTTGGAGTCCCTAGGGCCGCGCACCGCGTTCGGTCGCCGCACCCTGCTCGGCCTCCGGCCCACGCGCCGCCTCGAGGTGTGGGGCGGGGTTCTGTACGAGGACGGCCGGCTCGTGGGAACGGCCCTGGACCTTCTCGAGCGCCTCGAGGAGGGGCTGGGGGAGGGGCACTTCCCGGCCTGGATTGGGTTTTTCGCGTACGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1467824-1465975 **** Predicted by CRISPRDetect 2.4 *** >NC_015387.1 Marinithermus hydrothermalis DSM 14884, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1467823 30 100.0 38 .............................. TTCCAGCTGCCGCCCCTGCGGATCTCGATGACGTCCCC 1467755 30 100.0 36 .............................. CTTTTCCACGTGCACCACTCCCGTCGTCTGGGTTTG 1467689 30 100.0 38 .............................. TAGAGTTTCTCCAGATCCTGGGCCACCTCAAACCTCCT 1467621 30 100.0 36 .............................. TTCAGGCGGCCGAGCCGCTCCATCAGGTCTTCTGCA 1467555 30 100.0 37 .............................. TCGTCCTGGCCCCCACGGATGAATAAATAGACCAAGC 1467488 30 100.0 37 .............................. GCGCTCCTCGGGGCTCAGGCGTCGCGCGCGCGTTCCG 1467421 30 100.0 37 .............................. GCGAAAAAGCCGGTGAACTCCTGGGGCGCATCGCGTC 1467354 30 100.0 37 .............................. CCTCATCATTTTTCCGGGGGGTATACAAACTGAAACA 1467287 30 100.0 40 .............................. CTCGACGAGATCATTGAGGAGGCCTACCCTCAGGCGGCCC 1467217 30 100.0 37 .............................. GTAAACCTCAAGAACGCCGTAGGGGGGACAAGATGAA 1467150 30 100.0 37 .............................. CCGCTACCCCGTAGGCTTTGGCTAGGTTGTCGAGCAC 1467083 30 100.0 37 .............................. TCCCGAGTGCAGTTTCGTGATCCGGATTGGGCGGGGG 1467016 30 100.0 36 .............................. CAGGGGAGGGGAGGCCAAAAACAGAGATAGCACGGA 1466950 30 100.0 35 .............................. CGAATCATTCCGTGGTATGTGATCCTGGAGTTACT 1466885 30 96.7 36 A............................. CATCCAAACACAGGAACAACCCCTAACCGGAAAACC 1466819 30 100.0 36 .............................. TATCGCTCCCGGAGTTCCGGGAGCGGGAGTTCTTTC 1466753 30 100.0 37 .............................. CGTCAATGAAGCGCTGGAACGGGCTCGGGCTCTCGGG 1466686 30 100.0 37 .............................. CCCGCTCCCACGTAGCCCACACCGATCACGATCCGCA 1466619 30 100.0 37 .............................. CCTCCCTGGCCCACATATCCGCCTCACGCCGCGCCCG 1466552 30 100.0 40 .............................. CATGAAGCGGCGGCGCGGAGGTTGGAACCCGTTGCGGGCA 1466482 30 100.0 38 .............................. CTCCTGGACATGCTCGGCGTCGGCGAGGCGCTGGCCGC 1466414 30 100.0 38 .............................. CGCCAATACGTCCGCCCCCCCTGCCATGCCCTTGTGCA 1466346 30 100.0 39 .............................. CGTGACGGGGTGCCGCCTGCTCGTGATCAGCATTTCCGG 1466277 30 100.0 39 .............................. CTTCGCGCGGGGGGCGCTCACCGCTCACCGCGCTAAGGA 1466208 30 100.0 39 .............................. CTTCGCGCGGGGGGCGCTCACCGCTCACCGCGCTAAGGA 1466139 30 100.0 36 .............................. CTCCTCGAGCTCTTCAAGGACCGCTTTCGCGAACTC 1466073 30 96.7 39 T............................. CGGGACACCTCGAGTATAGAACAAACACCCCGCGTGTCT 1466004 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 99.6 37 GGTTTTCACCGTTCCTTCTGGGATTTGAAA # Left flank : CCTCGAGCGCGGCACCGAGGTGCACTTGATCATCACCGACCTCGCCATGCCGGAACTGGACGGGTTTGGTTTGCTAGAGGCGCTGCGTGGAAAAAGCGTTCCCCCGGTCCTCGTGCTGACCGCCCGCGGGCACGTGGAAGACGAACGGCGGGCCCTAGACCTCGGCGCGGCCGGATTGATCACTAAACCCTTTTCGCGGGAGGGGTTGCTTGCCGCGGTGCGCATGCATCTTGAAGGCTCGAGCTGATTTTTCTTCCGGGGTTCGCTGCTTGATGTGTGGGGTTTGGATCAGGAGTAGGGGAGACGCTACGCGGATATTTTGACTTGGTATAAAATTTTTCTACCTCCGGTCGTGCTATAATCCCGGTAGGTTGATGCAAGCAACGCGCTCTCAACACAGCCCTTTCTTATCGCGCATTCTTTCCCAGATTGTATTCTGGGTTGCTCTTTGACAACAAAGACGCAAATCCACGAGAGCCCTTCTGTAGGGGATGTTATGG # Right flank : TCCCTTCCTTCAACAACACTTAAAACCCCACCGCGGTTTTCGCTGCGGTGGGGCCTAAAAAGGAGCAGTAGCTTAGTTTCCGCGTTTAGGAGGGTAATCGCCGTCGCCGTAGCGGATAAAAGCGGGGATCTCGTAATTGGTAGGATCGATCGTTCCCTGGGGGGCGAAGTCCATGATGCGAGAGGTGTCCGAGGGGTAGACTGAAACCTGAGGCTCGTTGAAGCCCGCAGCGATCAAGATGACGCGCAGTTCGTCCGCCGCGCGCTCGTCATAGGTCACTCCATACAGGATATCCACGTCTTCGAAACCCGTAGCTTCCCGGACGTGCTCGACCACCTCCGAAGCTTCCATCAGGCTAAGTTCCTCGGAACCCACGACGTTCACCAGCAACCGGCGCGCCCCCTCGATCGTGCGGTCCAGGAGCGGGCTCGAGATCGCGGATTGCGCGGCCTGCGCGACGCGGTTCTCGCCGCGTCCCGCGCCGATCCCCATCAGGACCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTCACCGTTCCTTCTGGGATTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 2083555-2085389 **** Predicted by CRISPRDetect 2.4 *** >NC_015387.1 Marinithermus hydrothermalis DSM 14884, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2083555 30 100.0 37 .............................. ACGCGCTCCGCCAACTCTCCCTGATGCTCCGTGAGGG 2083622 30 100.0 40 .............................. TACAACACGCAACCCCTGATTTGCAACCCCCACCACAATA 2083692 30 100.0 35 .............................. CCCCAAACCCCTGGTTTTGCGCTACGAAAAACGCC 2083757 30 100.0 38 .............................. AGGATATCCACAATCGCGTCCTCAGCGCGTTCGGGGTG 2083825 30 100.0 39 .............................. AAAGAATCAAAAGCGCGAAACCCGGAACCCGCAACAACA 2083894 30 100.0 36 .............................. CGCCGTCAACGTAGCGGATGACTGCCCACGCGGGGA 2083960 30 100.0 37 .............................. GCGTGGGAATTAGCGTGGGAAAACCAGGACGGGTTCA 2084027 30 100.0 36 .............................. AAATGAGGTCCCCCCACTGTCGGATCAAAGGGCGGG 2084093 30 100.0 38 .............................. TCTCGTGGGCTTTGCCAAGGAGAAAAAGGCCGCCTTGG 2084161 30 100.0 34 .............................. CCTCGAGGCTTACAGTAACCTAGACGGTGTACAA 2084225 30 100.0 36 .............................. TAGTAACAACCTCAAACGCCTTGTTAGCGATGCCTT 2084291 30 100.0 37 .............................. CCCCAACGCAACATTATACACCGTCACTGAAACGCAG 2084358 30 100.0 36 .............................. GCCTCATCCACAATGAATAATAGGTTAGCTCCAGAA 2084424 30 100.0 37 .............................. CTCGATCCGGCGATCCCCTCGGGGCGGCATGGGCGCC 2084491 30 100.0 35 .............................. GGCGTGGCTGGCCGAGCGCGGCATGGACATAGAGA 2084556 30 100.0 36 .............................. TCAAATGGTCCATATTGCGCCGTTCCCGTCCTGGAC 2084622 30 100.0 36 .............................. CTTTCTAGCCGGACGCAGGCGCGGCGGGTCCTGGAA 2084688 30 100.0 37 .............................. CTGGAGGGACGCATGGAGCGCATGGAGGAACGAGTGG 2084755 30 100.0 36 .............................. CACTCTAGCCCCCGCTTACCTGAGGAACACCCCCCA 2084821 30 100.0 37 .............................. AAAGAATCAAAAGCGCGAAACCCGGAACCCGCAACAA 2084888 30 100.0 37 .............................. CATGGAGTGGGTAGAACAAAACGACAACCTATCCAAA 2084955 30 100.0 39 .............................. TGGCTTCCGTGGTCATCTTCACTACCTCCCTTACACCTG 2085024 30 100.0 38 .............................. TATACCCCCACCCGGTAGGGTGGGGGGTGGGTTAGCGT 2085092 30 100.0 37 .............................. CCCAGTCCTCTAATTCACGGTAACTAATGACGTGTTC 2085159 30 100.0 38 .............................. AAGCGGCTCCTCAGTTACGAAACCACTCTAGCCCCCGC 2085227 30 100.0 38 .............................. ACAGGTTCTCCTTCCCTCTGGTACTCACGGATCTTCTC 2085295 30 100.0 35 .............................. CCTCACCGCGAAACTCATCATCCAGGAACTAAAAA 2085360 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 28 30 100.0 37 GTTTTCACCGTTCCTTCTGGGATTTGAAAC # Left flank : TGGAGAAGCACCTGCTCGGCGACCGGCCCTACGAGCCTTTCAAGCACAGGGGGTGAGTCATGTACGTCATCATGGCTTATGACGTGAACGTGGAACGCGTAGTGAAGGTCTTGCACACGGGAAGGCGCTACCTGACCTGGGTGCAGAACTCGGTGCTCGAAGGGGAACTCACGCCCGCTCTTTTTGAGCGCTTGAAGGCGGATATCGCTAAGATCATCGATCCTAACCAGGATGCGGTGCGTTTTTACGTCATTAAGCGCACCGCGTGCTTTGAGAAGGAGTTCTTGGGGCACAGCAAGAACGAACCCGGACAAATACTTTGACTAAGTACAATATTCCTCGACCTCCGGTCGTGCTATAATCCCAGTAGGTTGATGCAAGCAACGCGCTATCAACACTTCCCTTCCTTATCGCGCATCCTTTCCCAGATTGTGTGCTGGGTTGGTCTTTGACAACTAAGGCACCAATCCGTAAGAGCCCTTCCTTAGGGGATGTTATGG # Right flank : CGAAGACTCAAAGCAAACTCCGCCTCCCGGAGCATCCTCTTCGCACGTACCCGCAACCCAAAAGCAAGGCGGGCCGTATGCCCGCCTTAACGCGAGGAATGCACACTACCTTGCTCCGCTCAAGCCCCCGGGTGCTCCTCGAGCGCCTGGCGCACGCGCGGGTTCACGGCAAGGAGGAAAAGCGCCAGGCCTAGGAGGCTCGCGCTGAAAACGTACGGGTACTCGGGCCGGAACTCGTACAGTCCCGTTCCCGCGACCGGGCCCAGCATCCGCCCGAGGGCCTGAGCGGCGCTGCCGAGGCCCGCGACGCTCCCTTGCTCGCCCTCCCCGACCGCCAGGGAAAGCGCCGCGGTCACACCGGGCATGGCGAGACCCTGCCCGAACCCCTGCAGCACCAAAGCCAGCGTCAGCACAGCGAACCCATGCGCAAAGATGAAAAGCACGAACCCCGCGAGGGCCGCCGGCACCCCCACCCAAAGCAGCACCCGGGGCGGCCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCACCGTTCCTTCTGGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //