Array 1 2483985-2483791 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP047820.1 Staphylococcus aureus strain UP_1395 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	===========================	=============================	==================
   2483984	    27	 100.0	    29	...........................	CATTATTGTATGCTGACTTTTCGTCACCT	
   2483928	    27	  96.3	    28	...G.......................	TTGTCTGTAGAATTTCTTTTTGAAATTC 	
   2483873	    27	 100.0	    29	...........................	CATTATTGTAAGCTGACTTTCTGTCAGCT	
   2483817	    27	  92.6	     0	...G.....................T.	|                            	
==========	======	======	======	===========================	=============================	==================
         4	    27	  97.2	    29	TCTATGTTGGGGCCCCGCCAACTTGCA	                             	       

# Left flank :   AATTCTTTACCGCTAATCTTTTCAGCTTCATACACTTTAAAAAGGACTACAAATTCTTCAATTGAAATCTTATGTGTTGTTTTTAACCAGTGCTTTAACTGACTTAACTCCCTTTCTGCTTCTATAAAACGTTGAACTTTATTACTCATAATATGATGCCTCCTATGTTTCTTCTTAGATGTTTGTAATTCATATTATTATACAATTACTTAAATTTATTATATATCAAACTTAGTATTTTATCTATTACAAATATTAAATTGCTGGCTATATCTTGTTTAGATTTATATCTTTTGGACAACTTGTTGTTTATTCGACAACATTTATACCTAAAAAAGATATATTACAACTCAATGGCATGGAGTGTGACATCAATGTTAAAGAACCACTAAAGATTTATTATGTAGTGATTCTTAAGAGTGGGATAGAAATGATATTCTCATAAAATTTATTTCGTTGATCCCCAACTTGCATTGTCTGTAGAATTTCTTTTGAAATTC
# Right flank :  AAAACTTTAAAAACGATCATTTCTATTAAATCTGGCATAGATATGACCGTTTTTACTTTAATAAATAATATTGTATTTTAGGGAGTAAGACAGAAATATTAAAACATCTCTAATGATTTAATATGTAGTGGTCCCTACACATTAACCACCAATATAATTCATGTTTATCTTTTTACGTTGACGATTGGCAACTGTTTGAGCAGTTCTCTCATCTGAATATCGATCATCTCTTATTTGCCATAAAGCTTTAAATTGTTCTTTTAATTCTTCGTCGGTCACGCCAGAACGAATAAACGCTTTAACGTTAAATCCATCGACAGTTGCAAATAAACATCCGTAAAACTTCCCATCTGATGACAGCCTTGCGCGTGTACATGTAGAACAAAATGATTGTGAAACACTTGTAATCAAACCAAATTGAACACCATTATCCTTATGGCGATAATATTTTGCTACTTCCCCAAAATATTTTGGTTCTACAGGATCGATTTCAAAGTGCT

# Questionable array : NO	 Score: 2.52
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCTATGTTGGGGCCCCGCCAACTTGCA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.00,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,0.78   Confidence: MEDIUM] 

# Array family : NA
//