Array 1 18443-16092 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWFG01000086.1 Brachybacterium nesterenkovii strain CIP104813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18442 29 100.0 32 ............................. TCCCTGGCTCCGCATGACCCGCGCCGACTGCG 18381 29 96.6 32 ............................G AAGGCGTATGCCAAGGCGTACGGCTACAGCGA 18320 29 96.6 32 ............................G GGATAGGTGCCGTATCGGTCGGGCTTCGTCCA 18259 29 96.6 32 ............................G CACGGAGTCCGCGGTGTCGGACCAGGCGAGCA 18198 29 96.6 32 ............................G GGCGGGTACGCCCTGGGCGGCATCGTCGGCCC 18137 29 96.6 32 ............................T GCGCCCACGTGGACGTGGTCGTAGTGCATCCG 18076 29 96.6 32 ............................G CTCAGGGTGGCGGTCTCGGAGAACTCCGACTG 18015 29 100.0 32 ............................. TGCTCTTCGGGCATGGCGTCAAACTCGGTTTC 17954 29 93.1 32 ...........C................G TACGCGATGCTGTTCGGTGCGTCGATGGGGCG 17893 29 96.6 33 ..................A.......... CCTCACACCAAGCACGTGCACGTCAGCATCCTG 17831 29 96.6 32 ............................G GATTCCCCGTCGATCCACCTCCATGGATCGAC 17770 29 100.0 32 ............................. CCTCTGGCCCGCTCTGGCGCAACCACACGCCC 17709 29 100.0 32 ............................. CCGCATCAGGTCTCCCACCTCCTCGTCGTGGA 17648 29 96.6 33 ..................A.......... CCTCACACCAAGCACGTGCACGTCAGCATCCTG 17586 29 96.6 32 ............................G GATTCCCCGTCGATCCACCTCCATGGATCGAC 17525 29 100.0 32 ............................. CCTCTGGCCCGCTCTGGCGCAACCACACGCCC 17464 29 100.0 32 ............................. CCGCATCAGGTCTCCAACCTCCTCGTCGTGGA 17403 29 100.0 32 ............................. CCGGTTGATCGCGTCAGCCTTACGGCCGGTGA 17342 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 17281 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 17220 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 17159 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 17098 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 17037 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 16976 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 16915 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 16854 29 100.0 32 ............................. GCCACGAGATCGATAGTGCGACGGGTCGCCTT 16793 29 96.6 32 ............................G CATCCCGACGAGTACGACTACGAGTGCCGCCA 16732 29 96.6 32 ............................G CATCCCGACGAGTACGACTACGAGTGCCGCCA 16671 29 93.1 32 .C..........................G CATCCCGACGAGTACGACTACGAGTGCCGCCA 16610 29 96.6 32 ............................G CATCCCGACGAGTACGACTACGAGTGCCGCCA 16549 29 96.6 32 ............................G CATCCCGACGAGTACGACTACGAGTGCCGCCA 16488 29 93.1 32 .C................A.......... TGGGCGACGGCCCGCACGAACGCCCACTGCAG 16427 29 96.6 32 ............................G ACCAGCGCCCGCCTCGATGGCGCGATGACCCT 16366 29 96.6 33 ............................G GTGTCGCCGACCTCGTCGACCTCCTCGTCGCTG 16304 29 100.0 33 ............................. GTCGTGATCTTCCGGACCGACGGGTGCCGCTTG 16242 29 100.0 32 ............................. TCCTCATGGAGACGCAGCGCCTCGGCCCAGCC 16181 29 93.1 32 ...........A................G GTCCAGCTCGCGGACAAGCGCGAGGTCGCCAA 16120 29 89.7 0 ....................A.C.....A | ========== ====== ====== ====== ============================= ================================= ================== 39 29 97.6 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGTTCGAGGATTCTGTGGAAGGTTGACTCGAAGGATCACACGGTGGCCGCGTCCACGTCCGGGACGATCACGGTGCCACCGCGCTACACCACTATGCGGGACTCAACTGCGGCCTACGGCCTCA # Right flank : CCCACCACATCTTCACTCGTCATGAATAGGTCGTCCCCCGGCAGGCGGAGATCCACCCGGGCACAAGCCGTCGTAGCCACCGCCCCGACTTCCTCGTGTCGGCAACCGCCTTGACCGGCGCCCCTCCGACCTCATGGTCAGTACAGGTACCCGTCCTCATCCAGGTCGTCGTCCTCGCCGAAGGGGAGGTCCTCCATCTGCATGATCTCCATCGCGTTGCCCATCGCGACCAGCACCGCGCAGGATGCGGCGACATGGCGGTCGTCGCGCGTGATCACGCCCGAGAGGGCGAGCGAACGCAGGTCCAGGTCGGTCGATGCGGCGCGCCAGAAGTCCGCCATCATGCGCTCGGACGCGAGCTCGTCGTCCGAGAACGACCGGAGGACGCCGTGGATGTCCGGCATGTCGAGTCCTCCTGCGCTGCCCGCCTTCATGAGGGCGAAGGCAGTGTCCGGCAGACCGCTGAACCCGCCGTCATACGAGGCGGAGAGCAGACGGGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9558-12030 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWFG01000047.1 Brachybacterium nesterenkovii strain CIP104813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 9558 29 96.6 32 ............................G TCGGCTGGCACGACGGCAGTGGACGACACATG 9619 29 96.6 34 ............................G GCTTCGCGTCCCAGCTTTGCGTGCCCGCGCTTCG 9682 29 96.6 32 ............................G CCCGCCGACCACAAGCCCGCGAAGCACCCCAA 9743 29 100.0 32 ............................. GGCCCCCACCGCATCACCCGGAGCGGGGCCCA 9804 29 96.6 32 ............................G AACCGAGGGAACCCCGACGAGGCCAAGATCGA 9865 29 96.6 32 ............................G CCGGACAGGCCATCCAGGTCCTGCCAGGTGAA 9926 29 100.0 32 ............................. GCCACCAGGAGAGCGAGGACTGCGGTCACCGC 9987 29 100.0 32 ............................. GTGCCGGGGGCGAAGGCCGTGGTGCGTCTGGT 10048 29 100.0 32 ............................. AGCGGCTTGACCGTGTCGCGGAACCAGTTCGC 10109 29 100.0 32 ............................. TCGCGCGCGCCTGTCGGGATGCGCCGAAACCC 10170 29 100.0 32 ............................. GAGGTACCGGCGAGTGAGGACCTCCTGGATCC 10231 29 100.0 33 ............................. AGGAGACACGATGAAGCACATCGACCTCAAGCC 10293 29 100.0 32 ............................. TCCGAGATCTCCGCGTACGAGTTCACGGTCAC 10354 29 100.0 32 ............................. TCCGAGATCTCCGCGTACGAGTTCACGGTCAC 10415 29 100.0 32 ............................. TCCGAGATCTCCGCGTACGAGTTCACGGTCAC 10476 29 100.0 32 ............................. TCCGAGATCTCCGCGTACGAGTTCACGGTCAC 10537 29 96.6 32 ............................G AACTACACGCAGGCTCAGCGTGAAGCCTACCT 10598 29 100.0 32 ............................. CACGGACTCGCGCTCGCGGCAGACATCTACTC 10659 29 100.0 32 ............................. GGGGCGTGAAGCGGACATCGGGGCCGCCGTCC 10720 29 96.6 32 ............................G GCCCCGCCGGATGGACGGGGCCGTGTGTATCT 10781 29 100.0 32 ............................. CTCGGGACCCTTGAGGATCGCGGCGAATCCGG 10842 29 100.0 32 ............................. TGGCAGCAGACGATCAACCTGCGCCAGGACCG 10903 29 100.0 32 ............................. CACGTTGCAACGGGGTTGATGGCCTTGTCTTT 10964 29 100.0 32 ............................. GGCACCGTCATCCCGGGCATTCAGGTCGAGCC 11025 29 96.6 32 ............................G TTCCCCGTCGCATCCGCAGACTGCTTCTGCAG 11086 29 96.6 32 ............................T GGCACGAGCCCCGGCGATCTGCAGATCATCCA 11147 29 100.0 32 ............................. CCCACCCCGCAGATTACGGGGGACCGACCCGC 11208 29 100.0 32 ............................. GGTGCGCTGGGGGGGACCTCCCATGTGATGCC 11269 29 96.6 32 ............................G GAGCAGTTCATCGACCTCTACACGTCGCCGGA 11330 29 96.6 32 ............................G GCGACGAGCCGACTCGGACAGCGCGTCACCTT 11391 29 96.6 32 ............................G GGTGCGACCGTGGACATTCCGCGGTTCGGGGA 11452 29 100.0 32 ............................. GGCTGTGCCCTTCACGTCGGCCACGAGCTTCT 11513 29 100.0 32 ............................. ATCTCGATCATGTGGTCCTCCCTGCGCTCCGT 11574 29 96.6 32 ............................G GTGCAGGCCCTCAAGGGTGACGCCGGAGCGAT 11635 29 100.0 32 ............................. CAGCTCGTCGACTTCGGCATCGACGTCGGCGG 11696 29 96.6 32 ............................G ACGTCCAGCGATCCCGACGCGGGGTCACCGAC 11757 29 96.6 32 .........................A... GCACGGCCGCGCTTGCGCGGCGTCTCGGGAGG 11818 29 96.6 32 .........................A... GCACGGCCGCGCTTGCGCGGCGTCTCGGGAGG 11879 29 100.0 33 ............................. GCCGATCCTGGCCCGCCTGGGACGAGCACGAGA 11941 29 100.0 32 ............................. TGTGGGATTCCTGGTGCTGGTCGCCGGGGCGG 12002 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 41 29 98.6 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : TCCCATGATGACCCTTGTGCTGACCGCTTGCCCACCGGGGCTGCGCGGCGACGTCACGAAGTGGCTCCTGGAGATCTCCCCCGGGGTGTATGTCGGCGACCCGCCTGCCCGTGTGCGCGACATGCTGTGGCTGCGTGTCGTGGACACCTGCAAGGACGGCCGAGCGATCCTCGTGTTCTCCGCACGGAACGAGCAGGGGTTCGAGTATCGAGTGCACCGCCATGACTGGGAGCCCGTCGACGTTGACGGACTGACGCTCATGCTCCGACCAGCCCAGGAGAAGACCCCGCAGCGCCGTACGGGCTGGAGCAAGGCCACTGCTCAGCGTCGGGCGCGGAAACCCCATTGGGGGTCGCGGACCTAATTGGGATTGCGGAAGGCCAGGTTGGATCAGCTGAGTCGTGACGGGCCCTCCATGTCCGTCAGTACTGTGGACGAGTGCGACGCCTAAGTCGTGTGTCATTCGTGCACAGGCCAACTGTTTATCCTGGTCAGCAAGA # Right flank : CGGTGCTAGATGTACTGACCGGGGACGTTGATCGGAGGTGGATCTTGCCAGCCCTGTAGTATGCGTGCATACTGTTTGCATGTATCTGGCACTTCGCGGTTCGTGGTGAATGACCCTGCTGTGGCGGGTGTTCACGCTACGGTTCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //