Array 1 76696-76547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZG010000005.1 Cronobacter sakazakii strain Crono02-YL Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76695 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76635 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76574 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 351598-350531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZG010000002.1 Cronobacter sakazakii strain Crono02-YL Scaffold1_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 351597 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 351536 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 351475 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 351414 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 351353 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 351292 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 351231 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 351170 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 351109 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 351048 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 350987 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 350926 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 350865 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 350804 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 350743 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 350681 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 350620 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 350559 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 380746-378033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZG010000002.1 Cronobacter sakazakii strain Crono02-YL Scaffold1_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 380745 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 380684 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 380623 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 380562 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 380501 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 380440 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 380379 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 380318 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 380257 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 380196 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 380135 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 380074 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 380013 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 379952 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 379891 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 379830 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 379769 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 379708 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 379647 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 379586 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 379525 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 379464 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 379403 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 379342 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 379281 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 379220 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 379159 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 379098 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 379037 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 378976 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 378915 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 378854 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 378793 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 378732 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 378671 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 378610 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 378549 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 378488 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 378427 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 378366 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 378305 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 378244 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 378183 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 378122 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 378061 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //