Array 1 11511-12332 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQQ01000004.1 Ligilactobacillus agilis strain UMNLA8 agilis8I7S4LR1contig101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11511 28 100.0 33 ............................ TTAGTAATATATTGGCAATCGGTCCGGGGATAG 11572 28 100.0 33 ............................ AAATCAAAGACACGAAGTATATTGAAGATCCGG 11633 28 100.0 33 ............................ TTGACCGGGCTAATGAAACTTCACAGAAAACAA 11694 28 100.0 33 ............................ TTGTAATCCATTGGATCAGGATCCTCATCAGCT 11755 28 100.0 33 ............................ CACATTCCAATTCTGTTTTTGAAAGGCTGTCGG 11816 28 100.0 33 ............................ TAGTTCTTCAAGCAACTTCACACCGTTGTTTCC 11877 28 100.0 33 ............................ TATAGTTATGAACTTCTTCCGCCTGTTCTGGTT 11938 28 100.0 33 ............................ TAGTGGTGAGAGGACTCTTACTACAAGTGATTG 11999 28 100.0 33 ............................ TCGTACAAGTCATCGTTATGCTGACCGAACCTA 12060 28 100.0 33 ............................ TAATTTGTTGAGCATTAGATACTTCAGTTACCG 12121 28 100.0 34 ............................ TAATTTTTTGATTGTTTCTTAATGATCTTGGTTA 12183 28 89.3 33 ........T.................TA ACTTCACTTTCCTAGAGTCGAAGAAGAGCCATA 12244 28 100.0 33 ............................ CATATGTGCAAGTGTTTGTAAACACTTTTTACT 12305 28 85.7 0 ..............G.......C...AT | ========== ====== ====== ====== ============================ ================================== ================== 14 28 98.2 33 CTTCTCCCCACACTAGTGGGGGTAATCC # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTAAAGAGTATAAAACTTTTAATCGGTATATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTGCAAGCAAGTAGGCTTAGACTTACCTGCTAATCGAGTGGTTGACTTGGCAATGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAGCCTCATAATTCTCTGTCCGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGGTTGCTTACGGATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : TGAATTAAGCCAATAATTCATTGGTAAACATACCATAATGAAATGTATGTAATTATTTTCCTAATTCCTTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCCGTTACCAATACATAAGTTCTATTTCTAGGACCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCGTGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTTGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAGTATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCAGGTTTTGCTTATTGTGATGGGTTAGATGTAATTGAGGAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTAGTGGGGGTAATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.50,-11.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 65652-65026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQQ01000038.1 Ligilactobacillus agilis strain UMNLA8 agilis8I7S4LR1contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 65651 30 100.0 35 .............................. TATTATCTTCATTCTCTGATTCTAAGTGAACAATT 65586 30 100.0 36 .............................. ATTTTTGACCCCGTGAATCCATCCCAACCACCATTT 65520 30 100.0 37 .............................. TGCGCCAACACCCGTTGTTAGCTTCAAAAAATTATAA 65453 30 100.0 36 .............................. ATAGCTTTGAAGAACTGTGTTAGTTTCCATTGGAAC 65387 30 100.0 38 .............................. GAACCTTGCTTGATGGATTAACATTACTTGACGAAAAA 65319 30 100.0 35 .............................. CATGCACAGATTATGTATATTGCTAATGATGTATT 65254 30 100.0 38 .............................. GAGAATGCCCGTTTACTCTTCAAATCTTTAAAGTCAAG 65186 30 100.0 36 .............................. CCGGCTTGCTTTTGTTTGAATTTCATCTCACTATAA 65120 30 100.0 35 .............................. GTTGCTGAAATTACTTTAAATGCAATGAATTTTGC 65055 30 86.7 0 .................A......A...TG | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.7 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCGGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGGTAAAGTTTCATAGTGTTTTAGGGTGTTATAATCGTTGATATATCAAGCTTTATGTTTTATAAACGTTTTGTAATGTAATGCTTTTTTAGGAAAAAGTATCCTAACAATTATAATAACTTGCCCTGGTGAGTATCGTATATTTTATATACGGTATTTTTTTATACTCTCTTTTTGTTTTTAAAAATATGCAAGTGAGATAGGTATAACTTGTAATGTTAAAAAAACTTCAAGTATACATCTGTCGACCGTAGATAGAGCAAAATGAAGGGGACATCGACAGATGATGAAAAAGTTGAAATCACTGGGCTTGAAAGAGTTCACAGAAAAAAGTATTATGTAGATATGGGGACAAAAGTAGTGATAGACAGAATGCATGTGGAAACTAGTTGATAGTACAGAGATTTTAAAGGGTAGT # Right flank : ATTGAAGAAGTTGAGTATTATATATGGAGAATTAAAAAAAGACATGGGTAGTTGATGGTTATACATGGCTACATTGTCCTGTATGTGGTGAAGAGGTTATGGATTATGATATTTGTGATAATTGTGGATGGCAAAATACAAGAATTATAAATCATGATGGTGGACCTAATCATATGATACTCGAAGAAGTCAAAAAAGCTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 68076-68234 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQQ01000038.1 Ligilactobacillus agilis strain UMNLA8 agilis8I7S4LR1contig20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 68076 29 100.0 36 ............................. CTTACAGGAGGTCAAACTTAACTCTGAAACGGTTTA 68141 29 100.0 36 ............................. GAAAGACCCGTTACGCAACCTACTCATCTTCAACAT 68206 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 CTTTACATTCCTCTTAAGTTAAATAGATC # Left flank : CTTATTATTTGGCTGATAGAGTCGGATTGGACCCAGCAGATGAAAACCTGCTTCCCGCCCTTAACTACTCATTTGATTACCAGCTAAATTCAACGCACGACCGCTTCACCCAGCTATTAGCACATATCCACTTGAATCACCAGGATTTCACCTTGGACTTATTAAAAATGCCTGAACTGTGCTTCATTACTAAGCACCGCTGCAAGGAAGTTAAGGTGACAGACGAGAATAGTGAATATTTTGGCCAAGTGATGCAAGAAGCTTTACCTGACCCCGAAGCCGTCTACCTAGATCCAAATGAAATTGCCTATAAGCTGACCCCCGAGGATATGCCCTTAGTTGAGTGGACCCTCAATTTCGAGCCCCTCGACACCTATGAAGAATTGATTAATTACTACCACAACGATAACTAACTAAACCAGCCTATGATTGAAACGAGAGCATTCAATCATAGGCTGGTTATATTTATAGCAGCATTCTCAAGTAGAGGCACCTAATAT # Right flank : CTCTACACTACCAAAACCCTGTACCACCAACTAGTTTTCACATACATTCTGTCTATCACCAAATTCCACCCTCAGTTATATATTACTTTTTTCCCTAAATCCTTTCAAGGCCTATAATATCAACCTTTTTATAGTCTGTCGATACCAGTACTATTTCACCTTATCTTAGGTCGACAGATGCCAGCACTCTATAACAAAATGTAACTAGTAAAAAATGTACTTCACCACAACACTCCATATGCAAACAATTTTGCAGCTAAAATTTCTTACGAGAAAAAGTTCAGTAAACTAAGAAGCATGATGACGCTTATCCTAAAAGCATTCAGTACAAACCATTGAATCCAAGCATTTGTATCGGCATAAATCCCCACTCCATGGGGTTTTAAAGTCCGGCTAATATATGGAGCTGTAATAAATGGAATTATTAGTGCTAACATCTGATATCCTGCATTATACAAATAATTCCGGATAAGTTTCATAAATTTTTATCCCTCAAATTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTCCTCTTAAGTTAAATAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 28820-27597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQQ01000066.1 Ligilactobacillus agilis strain UMNLA8 agilis8I7S4LR1contig51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 28819 30 100.0 35 .............................. GCTTGTAGGCTAGCCTTTTCTGCGTCTGATAATGT 28754 30 100.0 36 .............................. TGACTTTTTTGCTGATATGTCAAACAGGGAGCAATG 28688 30 100.0 36 .............................. CATTTTTCACGCGCTGATGTGGCATGTGATATTATC 28622 30 100.0 38 .............................. TTGAATGGTTGACCTGGAAACCCCGCACATTTGTTCAG 28554 30 100.0 36 .............................. TTCTTTACGTATGTAAAGTATAATGGGTTATACTTG 28488 30 100.0 35 .............................. TGTAGTAGCCCAATTCTGATACTTTCTTTCTAAGT 28423 30 100.0 37 .............................. AACGATTTTAATAAAATTCAAGAAAACATGGCTCAAA 28356 30 100.0 36 .............................. CATGATTTTGGCTACGCCTGGATATTTAACATAGCC 28290 30 100.0 36 .............................. AAAATTAAGGTGGTCAATTGATAGAATTACAATCGT 28224 30 100.0 35 .............................. GTAAATAGGCAACCTCTCCATTTTGCCGTTTTCTT 28159 30 100.0 39 .............................. CTGTTGCCCCATCGGAAATGGTCTACCGCTCTTAGACTT 28090 30 100.0 37 .............................. TATTTTAACGTCTGACAGCTCAAAAAAGACAAAACGC 28023 30 100.0 37 .............................. CCGGATAACCAGGTGGCTGAGTTAATGCGAGCTGTCG 27956 30 100.0 37 .............................. TTTTTAAAACCTCCTGTTACAATAGAAGGGCAGAATT 27889 30 100.0 35 .............................. AGCCTTTGGCTTTCGTGCGATATAGCTACGATACT 27824 30 100.0 35 .............................. GCAGCAACCAGAGCGCTGACCAACTCTGACTTACC 27759 30 100.0 35 .............................. TACGACATGGATGGGACGTTTGGCATGTACTGGTC 27694 30 100.0 38 .............................. CCATAACCAAACTGACGCGTATGTCTTAAAGCACTCTC 27626 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : GATGCAAGCTGACGGTGAAAAGTATTCGCTTCGGTACGGGAAGTCACAAAAAGAAATTGCCGATGCTTACTTGGAACTAGTTAAGCGTGATTACTCTGGCAAACAAGCCCTTGGAGCAATGAATACAGAGCTACAAGGTTCGATTGCGTCAGGTGATGACTTTAAAGATGTAGTTGAAGTAGCTTTCCAAACTCTGGAAGGCTTTGGGATGACTGTTGATAAGAACGGTAAGCAGTTATCATCAACTAAAGAAATGACCGTTCAGACTAAAAAAGCAGTTAATACCCTAGCATAATCGGCTAATGTAACATCAACTTCGTTTCAGTCCTTAGGGGTTGGGATGTCCTATGTATCATCAACAGCCCACCAGGCAAAATTCAGTCTAGCGGAAACGGCGAGTGCAATGGGTGTGCTATCGAATGCAGGTTTAGAAGCAGACAAGGCTTTGGTAAAACTGGCCGCTTAGCGAGTAATCGCTTTGAACAAGCATTTTGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //