Array 1 35055-26376 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRR01000007.1 Chromatium weissei strain DSM 5161 scaffold0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 35054 37 100.0 37 ..................................... TATTGTTTGGATCGTCAGACGGCGGTGTGACTTATAG 34980 37 100.0 37 ..................................... GTAAGTTAGTGATGGTGTGCTCTAAGCCATACACGCG 34906 37 100.0 33 ..................................... GGCGCACTAAGTTAGGTGTGCCTAACTTTTTGT 34836 37 100.0 36 ..................................... ACCAGCAAAGTTTTTTATGATGAGTCATCAGGAGAC 34763 37 100.0 37 ..................................... TTCTATTCCGCCTGTATCACCGATACGAGTCTGTCCA 34689 37 100.0 33 ..................................... GGCGCACTAAGTTAGGTGTGCCTAACTTTTTGT 34619 37 100.0 36 ..................................... ACCAGCAAAGTTTTTTATGATGAGTCATCAGGAGAC 34546 37 100.0 36 ..................................... AGCCGTATAAGCATTGTCCTATCTCTACGCCGCCAA 34473 37 100.0 36 ..................................... CGAAATTGATCGGAGCTAATTCGTCAAGCCTGACAC 34400 37 100.0 37 ..................................... ATAAGTGTTAAGGTGAAGCGCATCCTATGTTTATCTG 34326 37 100.0 37 ..................................... CAGAATATGCCAACGTGCGGATAGAGCTTGATCGACT 34252 37 100.0 37 ..................................... ACAAAGATTGAACATTACAATTTCAATCCTAAAGAAG 34178 37 100.0 37 ..................................... TTTGCGACAATGCGAATTAACAGCCGGAAATGAGGAC 34104 37 100.0 35 ..................................... AATTTGGCGTGACCGCCGACATGTTGACCAAACGC 34032 37 100.0 36 ..................................... CTTTTACCAAAACCAACTAACGACATATCATAAAGT 33959 37 100.0 36 ..................................... ATAATCAGATCGTCAGAACCTACCTGCACATGCAGG 33886 37 100.0 36 ..................................... CCCCTGTGAAACCACGAGGCGCTGGGTTGCGGTGAT 33813 37 100.0 37 ..................................... ATAGTCCGCGTTCAGGATATTGATTGGCGTATTGCGC 33739 37 100.0 36 ..................................... ATCATATCTCGCCCCAATTGTCATCTGTTGATAGTG 33666 37 100.0 36 ..................................... AAAAATCGTAGAAGTTAGTCATGTGGTTCTCTCTGG 33593 37 100.0 34 ..................................... CGGCCACCGTCAATTGGCATATTGAAGGAAAAGA 33522 37 100.0 38 ..................................... CTACGCCGGGGATATTCTCCCCTGTGAACTCAATAATC 33447 37 100.0 38 ..................................... CACGCCGCAGCAAGCAACTACGGCGCGGTACAACGCAG 33372 37 100.0 36 ..................................... CGTCCACACGCCACGATCATGCGCGTCTCATCTTGA 33299 37 100.0 35 ..................................... CAAAAACCGATGACACTGCATTAGCGACATTTATT 33227 37 100.0 37 ..................................... CGGCAGCAGCTTCGAGTTCCTGCCAGCGTTTGATGAT 33153 37 100.0 35 ..................................... CCGGATAATCCGCCATATTTGAATCACATTGGAAC 33081 37 100.0 36 ..................................... ATAACGGAGTGCATATAAAAATTGGACGATCAAGCA 33008 37 100.0 41 ..................................... TTGCGCGACCCGGCACAGCAACCCATCCGCTAGGCATTAAG 32930 37 100.0 37 ..................................... GCGCAATAGCAGTGACGTATAGCGAAATAGATGCGTG 32856 37 100.0 37 ..................................... GCAATGAAATGAATCTTAACAACTGCGTAAACCTACA 32782 37 100.0 36 ..................................... AGGCGCGCTCACGCTCTAAATCGACAGTATCAGCTT 32709 37 100.0 36 ..................................... AGTCTATGAATTCTGATATTTCTCTTTCTCAGATTG 32636 37 100.0 36 ..................................... CTTGCCGTGCATCACTCAACTCAGCAAACCGTTTTT 32563 37 100.0 37 ..................................... ATACGAACAGAAAGCATCACCGCGCCCCACGACTAGG 32489 37 100.0 38 ..................................... TTAGTGTCGGAAGACGGCGAACCGATGTGGATTGAAGT 32414 37 100.0 37 ..................................... CTCCCGAGCAATCTGAAGCCGTCATTGCATTAGGCAT 32340 37 100.0 36 ..................................... AAAAATGGAACCTCACCTGCGTCTGGCGTGAGGCGT 32267 37 100.0 35 ..................................... GAAAGCTGACGATATTGACACCGCAGGATTTAATC 32195 37 100.0 36 ..................................... CCCGTTAAAACGCCATCAATAATTGGTAGCACCGCA 32122 37 100.0 36 ..................................... AAAAACGCGGCAACATCTGGCACATCGACATCACGG 32049 37 100.0 36 ..................................... CCGGTTCCGGTCGCATCGAATGCCGCGCCGGTGCTG 31976 37 100.0 35 ..................................... AGAGAAACGAAGTGAACAGCAAATTTACTGAATTA 31904 37 100.0 37 ..................................... CTAAATCAACCAGATAGCCGTGTTCACTTTCAAGCCA 31830 37 100.0 36 ..................................... CGCTCGGATGGCGAAACTCAGATTTCAATTCAATCT 31757 37 100.0 37 ..................................... CGCCGAGATTAAATAGCGCCACCGCATTCCAATGCGT 31683 37 100.0 36 ..................................... CATCAATGCCATTCACTACCACGCGCCCCACAGCGC 31610 37 100.0 37 ..................................... CGGGATTACGGACTCACAGAAAGACGAGTTTATAAAA 31536 37 100.0 36 ..................................... AAATCAAATGCAGCGGATGCGACGCGCCGTGAATGG 31463 37 100.0 36 ..................................... AAAGTGAGGCTATCTTAGGCGTGAGTAGTAACGCTG 31390 37 100.0 35 ..................................... GAATCCGCACTTGGTGGACTGCCGTATAGCGGGTT 31318 37 100.0 37 ..................................... CCAAAGTAATATCCGGCAGCGTGATCGACATAAGTGG 31244 37 100.0 36 ..................................... TTAGAGCGTGATTCTGCGGACATTAAAAAGACCCTT 31171 37 100.0 35 ..................................... TTGGCGAATTAAATGAGATTCAACGACTATTGAAT 31099 37 100.0 36 ..................................... ACGCCTTAGCGATTTGTTCAATTGAAACGACACCTA 31026 37 100.0 36 ..................................... GAGTTTTAATGTGACGAAAGAAGAGCAATACAGATT 30953 37 100.0 36 ..................................... ACGCCTTTGTGGGTGCGCTGTATGAGAGCGGTGCAT 30880 37 100.0 35 ..................................... GAAATAATAGAAGACCTGAGATTACTTTGTGATTT 30808 37 100.0 35 ..................................... CAACGATTCCTTAAACTTTTGTGTTTGATCGGATA 30736 37 100.0 38 ..................................... AACCATTCGCGCTCGGTGCGGCCAGAGATGCCGCGATG 30661 37 100.0 36 ..................................... TATGAATATATGATTACAACGACGCAATTTGCGTGG 30588 37 100.0 38 ..................................... TTGCGGGAACTGCACTAGCAATTGCGTTCTCAGCACTA 30513 37 100.0 36 ..................................... CTGATCACGAATGTCTCATTCGGCGACTCGCTGCCA 30440 37 100.0 36 ..................................... ATTGGCGGCGAGCGCAGCCAGTTTCGCGTTGACCCC 30367 37 100.0 36 ..................................... ATACACCCATGCCGCGCCTTGCCGCACCAATTCTGC 30294 37 100.0 34 ..................................... AAAAAGGTCTGATCGTAATAAACCGGAAAATGAC 30223 37 100.0 38 ..................................... GTCAAAAATCGGAGTTAAGTGATGGATTCAAAAGCAGA 30148 37 100.0 35 ..................................... CTCACACTGCTTAGGCGCTTGCGGGCCGCTGCATA 30076 37 100.0 35 ..................................... TCGTGTACAAGGCATTTTTCAATTGCGTTCACCGC 30004 37 100.0 38 ..................................... TAATTGCTGTTGCTCTTCCCGCGCTTTTTCAATTGCAT 29929 37 100.0 35 ..................................... CTAGGTCGGCAGCCTGTTTCTGTTTGGCTTCGAGA 29857 37 100.0 36 ..................................... TCAATACCACGTTATCACACCAGCGGTACAGCGCGG 29784 37 100.0 38 ..................................... AGTGGAAAATACGCTCGCGTAGCTCTCCAATGACATCC 29709 37 100.0 36 ..................................... CGTCCTCTAGCTGCACTTTCACAGCTGGATCAGTGA 29636 37 100.0 37 ..................................... CCGGAAAACATCATGTTGTGCATGATGCCTGAATAAC 29562 37 100.0 36 ..................................... AGTACGACGGTGAGGAAATGTGTATCGGCTACAACG 29489 37 100.0 36 ..................................... GTACAGGTGAATGTGTGGGTTCCTGAAGAAAAACGT 29416 37 100.0 36 ..................................... AAAAGCTGAATGGGAAAGCTATTTAGCTTCATTGCC 29343 37 100.0 38 ..................................... TTCCAATTGCGCCCATGACCTTTTTTAATTCAGGCAAT 29268 37 100.0 33 ..................................... ATGACGGTGGTGGTGATGCTGTCGTCATCGCAA 29198 37 100.0 37 ..................................... TCCACGCCGTAAAGCGTGATGCGTAGCGGGCGCTGTT 29124 37 100.0 37 ..................................... TTAAAAATCTCATTCGGTAAAGTGGTTAAAAACGCCT 29050 37 100.0 38 ..................................... ACCAGCGCGAATCAGGGTTGCAGCGTATCTACCAGCAG 28975 37 100.0 36 ..................................... ATAAATAACAGTGTGTTATACGAAGTGCATCAGCGG 28902 37 100.0 36 ..................................... ATAAAGAAGTCTTTAGCGGATATGAAAATCAGCATT 28829 37 100.0 37 ..................................... TTGTTGGTTGCGTTGTTGTTGGTTGCGTTGGTCATGG 28755 37 100.0 36 ..................................... TGATCGTTGGGATTTGCCTTGACCCGCACCGGGCGC 28682 37 100.0 38 ..................................... ATGAAGTCGAATAAGACCGAGCTCGTTTTCTGTGACGG 28607 37 100.0 36 ..................................... GGCATGGTGTTGGTTGCGTTGGTCATGAGAAATACT 28534 37 100.0 38 ..................................... CTCGGTGCACCCGCACCGAGTATGCACTGCACCCGCAG 28459 37 100.0 37 ..................................... ACATGTAAAATGCGGTTAGGAAGACTTTTTCCGACAG 28385 37 100.0 35 ..................................... GAGCGAAATGGCTGGTACTGCGAAAGCACACACGT 28313 37 100.0 36 ..................................... GAGATGATGTCGCACGATGTGAGAACGTGTAGAGCG 28240 37 100.0 37 ..................................... GCCGTGTATTGAGAATAGGACGGGCAGCAATGGCAAC 28166 37 100.0 36 ..................................... TACACTTCCAACCGACCTGTGAGGGTCGGGCGGACA 28093 37 100.0 37 ..................................... AATTTGAACGCGATCAAGTGAGTGAACGCACATCAGG AAC [28064] 28016 37 100.0 36 ..................................... ATAGGTATATCGACGGACTAAAGGCGCATCGGCATG 27943 37 100.0 37 ..................................... AGGTTTTCTTCGTCTCCATCGTCTCCATCGTCTTCAT 27869 37 100.0 37 ..................................... TAACACACATGGTATGTACTCCTAAATAAACGAATAA 27795 37 100.0 36 ..................................... ACCATACTGATAATTTTGTTAATGCCCTTTTTTTAG 27722 37 100.0 35 ..................................... GATACCCTTTGTTTGTCCGCCCGACCTGTGAGGGT 27650 37 100.0 37 ..................................... CGTCCTCTAGCTGCACCTTCACAGCTGGATCAGTGAT 27576 37 100.0 36 ..................................... CGGCGCGAACGCTACGCTGAAGTGCCTGAGGAGCTG 27503 37 100.0 35 ..................................... TAAATGGTTAGATTCGTAAAACCGTTTTAATTCGA 27431 37 100.0 36 ..................................... ATAAAGCTAGCATTTTCCGACGCGGAAAGAAACTGA 27358 37 100.0 36 ..................................... GCATTTTCCGACGCAGAAAGAAACTGAAATATCCGC 27285 37 100.0 37 ..................................... CGGTAACACCGAGAACCAGTGCTGAATCAAAATGCGG 27211 37 100.0 34 ..................................... TATGGATTCCGTAATCACGCGAGTCCGCATCCGG 27140 37 100.0 36 ..................................... TAGGGATTCCGCGTCGCCATACCGCGTGGTTGCGGT 27067 37 100.0 35 ..................................... TTGATCTTGACCGAGCTAAACGTGCTTTAGCAGCA 26995 37 100.0 36 ..................................... CAGAGAATGAGGTGGAGAAAGAGAGAGACATCGACT 26922 37 100.0 37 ..................................... CACATGAAAAAGTTTTAAGCGAACTGTCCGATTTAGC 26848 37 100.0 36 ..................................... AAACAGAAAAAGCGCCTTTTGGGTTACAAGATGATG 26775 37 100.0 37 ..................................... AAATCCCATAGTTCCCCATGCCCTTCGTGCCAATCCA 26701 37 100.0 34 ..................................... CCTAAATGCGTCCAAATGCGGTGCTGTACCTCTG 26630 37 100.0 37 ..................................... TTCCGGCAATGTGAGTGGGGGCGCGATGATCTCGCGT 26556 37 100.0 36 ..................................... ATCAAGGATGTCCAGCCAGCCTTCTATACTCTCAGG 26483 37 100.0 34 ..................................... TCTCAGCAGTTGGTTCGTCGTCGTTTAATTGCTG 26412 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 119 37 100.0 36 GTTGCAACTCAATATCCAATACAACAAGGATTGAAAC # Left flank : GTATGTGCGCGATGGAAGTCAATTAACAGAAATGGTTATTAATGAGCAGTTGGTGATAAAGGCAAAGAGGTTAATAGACGAAATTTTTTCAATACTAAAAACTGGACGGTTGCCAGTGAGAACGACATCAAAGTTACGTTGTGAAGATTGCTGTTATCGTAACATTTGCATTTGAATATCGTCGTTAAAAGTGTTGTCGTTATCTGTAAAAAACACTACAATTGAAACTGTCATGTTTTGGTCTGTTGCATCGATATTGATGGTTAGTCAAATGCTGGTTGCCCTTGCAAAGTGTAAAATTTGCTGACAAAAAATTATTTTGGCGGCAAGAGTCAGTCGATATAACAGGTTGTTTTTAGTGAAGAAAAAGTACTTTTTGTTAACCGAATTTTTGGCCAAAATAGTCATTTTTCGGGAAAAACTGAGGTAAAAAATGCAAAAAATTGGGTCAGTAAATTTTTGTTACTGTTTGATTTTACTGATTTTTTGATGAAAATGCG # Right flank : GCGCAGAATGAGATATAGCTAATTCAGTTTCGCTAAGGCCAGTAAACTCAGCAAAATCACCGGATGTGCCGTGATAAACCACCTGCGGATCACCATTGCCGTCAATGATTTTTGACGCCTTGCTCTTTGCTAAAAAGTCAACTATGTTTTGATACAGACTCGGCGTGGCGGCAGATTCGGACGTATTGGCGGGGGCAGTTTCTGACTGAGCATCGCCTCCTTCTGCGCTGAGTCGCTTCCACATTGTTTTATTGAGCAGCTTGTTCTCAGCAGTAGCAATCACTTCAACAGCAGTAATAACGCCATTAACGCGTTTTTCAAAAATAACCGATTGCCGACCGCCTTTTTCAGTTCCTGCCCGAATACGATCTGGGTTTTTAAGAATATATGGCAACGCCTTCAAATCAGCCTCAGTGATCGCTTCATTAGACGGCTTGCGCTTCATCTCTTTCTTAGTGTCGCCATGCGCTCCAATCGCGTGACGGATGTCGTTTTCAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTCAATATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 560409-574248 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRR01000001.1 Chromatium weissei strain DSM 5161 scaffold0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 560409 37 100.0 36 ..................................... ATAACAGCGGGGATGGTACTCAAAAAGGAGCGCGAT 560482 37 100.0 38 ..................................... ACCACGAGATAGAACTGCCAGAGTTCCGGCGGTTGGTT 560557 37 100.0 37 ..................................... TTTGAATGTACCGAATCCACAATTCCCACAGCCGTCG 560631 37 100.0 36 ..................................... GTGTATGGCATGTCTACCTTTGTTTCGAAGCTGCAC 560704 37 100.0 37 ..................................... GGGCATAAAGGCGCACCGTTTTCTGTGCGGTCATCAT 560778 37 100.0 35 ..................................... ATTGTTCGATTCACTTCTCTATCTCCTGTCCGAAT 560850 37 100.0 36 ..................................... ATTAAAGTGACTTCACGAATGTCGTCATGGCCGATG 560923 37 100.0 37 ..................................... TGTCAATTTGATCAGCAACGGAAAGCAGTTGTGAATC 560997 37 100.0 37 ..................................... CGAATTAGGTGCATCATCGCCATTCAGAATTAACCGG 561071 37 100.0 36 ..................................... ATTGACCAGCTTGAATTAAATCATAGAGCGCGGATT 561144 37 100.0 37 ..................................... ATTTGATCCGATGTCAATTGTCCGGCTTGAATCAATT 561218 37 100.0 35 ..................................... GCATAATATGCCCGCCTACAATTCGGTATTTAGCG 561290 37 100.0 35 ..................................... CGGCTCGCGTCCTCGAGCAGCACTGCTACCGCTGG 561362 37 100.0 37 ..................................... ACAACTGCCAAATCTTCAAATAGTGGTCATGGGTGAA 561436 37 100.0 37 ..................................... TTGAGTCCGCCGGTCATAGTGGTTCCGTCATAGCTAC 561510 37 100.0 35 ..................................... AATATGGGAAGGCACTCAACCGCGCAACGTGCGAG 561582 37 100.0 37 ..................................... TGACGGATTGGTGGCGACCTTTCAAAAAATCACCGCC 561656 37 100.0 34 ..................................... CTAGATTCATGCTTATCAGGTAAATCTTGGCTCT 561727 37 100.0 36 ..................................... ATCAATACGTTTTCGAGAATAGGTATAGTGGCTCTT 561800 37 100.0 38 ..................................... GCCAATCACTTCACATTCTAAGCGGTCGTCCTGTACGT 561875 37 100.0 35 ..................................... GCGAATTCAACTTGAGTGTGAATGTAGGTCGGCGT 561947 37 100.0 36 ..................................... AATCATATTCGCCAGTTTCGTCATCTAGCCATGCCG 562020 37 100.0 36 ..................................... AGCTAGCAGGATCGGTCTTTTCGCTCGGGTCTTCCC 562093 37 100.0 35 ..................................... CCGCTAGAAAAGGTCGAGTTTAATGGGTATTGGTG 562165 37 100.0 37 ..................................... ATAGATACTCCAAACGCACTGTATACGCTTTCGCACA 562239 37 100.0 37 ..................................... CTTGCCTTGACTCCAATACCGTATGTCAAGCCTGCGC 562313 37 100.0 37 ..................................... GCCTTCTAATGATGTACCCTTAGTTGCTGCGCGTAGC 562387 37 100.0 43 ..................................... CGCGGACATCGCAACGTCAACGCAACGTGCAATCGTTCGGTTT 562467 37 100.0 36 ..................................... CAGTCATAGCGTTAAAGTTTGCTTCACGAGTCGCTT 562540 37 100.0 34 ..................................... AAGCGAGTCAAGATGCGACTTCAGGCAGTATCGG 562611 37 100.0 36 ..................................... ATACAGGCGGCGCTAATGTTTAGTTGCCGTCCATTG 562684 37 100.0 34 ..................................... TTAAATCCGCCAAAGTATCAATTGGTAGTGGCGA 562755 37 100.0 34 ..................................... CAGCATCAATGACCAATCCCTTAAAGCGACGTTG 562826 37 100.0 36 ..................................... GTGATGATGTCGATGTCGCTGGCGGTTAATTGCGGC 562899 37 100.0 37 ..................................... CCCTACTGCCTGCGGGTCGTATTGCGATTTACCGCCG 562973 37 100.0 36 ..................................... TCAATCAAGTGGAATCTATTAGAACGCATCATTAAA 563046 37 100.0 37 ..................................... TGCACCGCCTCAATCCACGGGCAGCCACGCGAATCAA 563120 37 100.0 35 ..................................... CCGCTTCCGGCTTGACTATTTCTGGTGCTGCCAAC 563192 37 100.0 37 ..................................... AACGACTCTTGTGAGTTTGAGCGTTATCTGCACAGTT 563266 37 100.0 38 ..................................... CGTATGCGAACGTGCAAGATATTTACCTACTTGCGCGT 563341 37 100.0 37 ..................................... AAAAACAATCTTATCGTTCAGATGTTCGATTGAAATA 563415 37 100.0 36 ..................................... CTACTTCAGTGATCCTGCTGACTGCTGCGGAAAATG 563488 37 100.0 35 ..................................... AAATCAAATGCAGCGGATGCGACGCGCCGTGAATG 563560 37 100.0 36 ..................................... GATTTTTCAAGCATTTCATCGGCAGCTTTGGCGCTT 563633 37 100.0 37 ..................................... AACACAGTATCACTGATGTAAGCGCGTTGAATGACAG 563707 37 100.0 38 ..................................... AATACGACGAGCGCCAGCGCCAAACGCACCAATGATGC 563782 37 100.0 36 ..................................... AGCGTCAACACTGAACCATGCCAACCCGGATCGCAC 563855 37 100.0 36 ..................................... ACGAAATCTTTTCGTTTTGGCAGTGCGATTGCCGCA 563928 37 100.0 33 ..................................... ACGCGATACATTCCGCCGTCGCTCTTGATGCTC 563998 37 100.0 36 ..................................... TTGATTTCCGCCATCCGACGGTCACTTTTGAGACCG 564071 37 100.0 37 ..................................... GAGCCGGTGTATTTGAAGGTTGATGAATGCAATGATG 564145 37 100.0 36 ..................................... AGTAATCGGCAACCATGCCGGTGGATACGGATTCGC 564218 37 100.0 36 ..................................... ATTCTCCGCGCTTCGTGATGCCATTGTTCCGGTAAT 564291 37 100.0 38 ..................................... CTGAAGACATCGCGTGGGGCTATCGCCTATGGTTGACG 564366 37 100.0 37 ..................................... CACTGCCTTTGCGAATTTCCGGTGGTATCCACCACGT 564440 37 100.0 37 ..................................... GTCAAGTTGCGCACTCAACCAGTCTGAAACGATTCCG 564514 37 100.0 37 ..................................... GTTGCGGCGATTAGATGGTAAAAACCATTCGCGTATC 564588 37 100.0 37 ..................................... AGACATTGCGACCTTGCGGCGCGTGGTATTGGATCGG 564662 37 100.0 35 ..................................... ACGCGGTAGTGAATGCGAATCCTAGCGATCATACA 564734 37 100.0 46 ..................................... TCGCATCAATAAGCTGATGAAATGCTGTCGCAATAGACGCAGAAAC 564817 37 100.0 36 ..................................... GCCACTTGTGGCCGCGCATACGGCGAGATAAACCGC 564890 37 100.0 35 ..................................... CGCAGTATCCGTATCCGTGTGATGCCACGCGGCCG 564962 37 100.0 37 ..................................... GTGACATCGCCGCCGGTGTCGGTGCGGATAACGATTG 565036 37 100.0 37 ..................................... CTACGATGCTGAAATCAATTCGGAATAAAGAAGCAAT 565110 37 100.0 37 ..................................... CAAACGAATACAACTGGGCAATTGCGCAATGCAGAAA 565184 37 100.0 42 ..................................... TTGGCTGCAATTGATGCGTTAATGACGATTTTTCCACCAACG 565263 37 100.0 36 ..................................... ACGCGAACCAAACGCTCTCAATACAGCATGGACTGG 565336 37 100.0 36 ..................................... TCTGGTTCAAGCCGCGCTGATTCGACTACGCCGATT 565409 37 100.0 35 ..................................... TGTTCACTGGGCCGATCTATACCAAGCCGGTCGCT 565481 37 100.0 36 ..................................... TTTTAGATATGAGTTCGGATCGTTTTGATTCTGAGT 565554 37 100.0 37 ..................................... CATCGTCACGCGCAGCACATTCAGCAATTACAGCGTT 565628 37 100.0 35 ..................................... ATTCAAATGGGATTTCTTTGGCGATGATAACAATC 565700 37 100.0 34 ..................................... CCGGAAGTGATGCCACTTCAGCGGCTTTATATCG 565771 37 100.0 36 ..................................... AATCAGCAACTTGATCTGCGTGTAATTGCCGCTGTA 565844 37 100.0 37 ..................................... GCCATTGGTGGCGTAGCCGAATCCGTGCGATCCTACT 565918 37 100.0 37 ..................................... GCAATTACTGCGCACCTGTATTCAGGTTTTGCAGCAT 565992 37 100.0 37 ..................................... ATACGGAAGCTGAACTGCGCGGCTCTAAGCTGTTGTT 566066 37 100.0 35 ..................................... AAACACCTAACAGCGCGGCGACTTGTTCGATGGTG 566138 37 100.0 35 ..................................... AGTAATCTGCCAACATTTCAGTCGATACTGCAATT 566210 37 100.0 36 ..................................... TGCAGAATAATCCACGTCCGGCAATACCTTATGCCG 566283 37 100.0 36 ..................................... CCTCCACTGCTGACATGCCCGCAGGATAGATTTTAG 566356 37 100.0 36 ..................................... ATTTTGTGCGTTGGTGGTATGACCGGAAAACGCTTG 566429 37 100.0 38 ..................................... GTGAAGATAAAATCGACGAATGGGACGATGAAACTCTG 566504 37 100.0 35 ..................................... ATCTGTTCCTGCGTCACTGAGCCGGTTTCAGCAAG 566576 37 100.0 37 ..................................... AATACCAATACGTCATCGATGTGAAGGGGACAGATTT 566650 37 100.0 37 ..................................... AATGGTCAGCAACCCATTTCAGTAGCGCACCTAACGC 566724 37 100.0 37 ..................................... CCAAATGCGATGCTGCGTTTCCGGTTCCATATACCGG 566798 37 100.0 37 ..................................... CTTAAAACTATAGTACCCACGCATCTGTCCGTTGCGT 566872 37 100.0 35 ..................................... TCATACGCTTCCAGTTGTCCTCCCAACGACGGGCG 566944 37 100.0 35 ..................................... TCGACCTGTTTCAACAGCGCGTCCACTCACTGCAC 567016 37 100.0 36 ..................................... AATCAATACGCGAAGTTAATCGCCGAGAAAAATGGC 567089 37 100.0 36 ..................................... GCCAACAGGAAGGTCGATTCGTGACATGCAGCCGCA 567162 37 100.0 37 ..................................... TTCTGGAGTGTTTTCCATTCTAACTACTTGTAAACCT 567236 37 100.0 37 ..................................... CAATGGACGCAGGCGGTTGGCGGTGCTCTCGAAGTCA 567310 37 100.0 37 ..................................... TGACCGTGATGAAACCTTCACGATCGAGTAAAACAAA 567384 37 100.0 37 ..................................... CAATTGAATCGTTGCCGGATAATAGCGTGAGTGAATC 567458 37 100.0 37 ..................................... GCGTGGGAGTGAGTCGCCGAATGAGACATTCGTGATT 567532 37 100.0 36 ..................................... GAAAACGTATTGATCGAAGCCGAGCAAGATCAGGTG 567605 37 100.0 37 ..................................... TGAATCAGGCACTTACACGGACGCGCAAGGTAAGGAG 567679 37 100.0 35 ..................................... CAATTACATTGACGAATACGATCACAACCAATAGC 567751 37 100.0 35 ..................................... ATAGCTCACGCCCGACTGTTCCTGCAGTTGGGCGT 567823 37 100.0 36 ..................................... ACAACCCGCGCCCTTCCGAACAGCACAATCCACATC 567896 37 100.0 37 ..................................... ATTGAAGCGCCTCGAACAGTTCGTGGTGCTCGCTCGC 567970 37 100.0 36 ..................................... AATACACCTGCGCTTCAGTCTCTAATGGCGGCATTG 568043 37 100.0 34 ..................................... CCATCAGTAGCGACGGCGGTTTTGCCGGTTTTCA 568114 37 97.3 37 ...................C................. CCCAGTGCAATTCTGACGGCGGTTCCGGCTGACGGCG 568188 37 100.0 37 ..................................... TTAAAAGTGGCAATGAGAAATTTCGATGACCACGATG 568262 37 100.0 35 ..................................... TTGAAATGCGATCCAGTAGATTCCGTTCCGGCTCG 568334 37 100.0 36 ..................................... CAAAGAGTTGAAAATTCGTCAGGATTGGTTGCTTTG 568407 37 100.0 36 ..................................... CGCATAAGCAATTAGAACAGCGCCAGCAAGCAACAG 568480 37 100.0 35 ..................................... TCGGGAATTCCTGAGGTGGCACGGATTGCCAACAA 568552 37 100.0 38 ..................................... CTTGACCGGTGCGCCGCTGCTGTGCCGTTTACCGGTGT 568627 37 100.0 36 ..................................... TTTCGTTGTCAACGATTCTCTTAAAACAATCGCTTT 568700 37 100.0 38 ..................................... GCGTAGCGATACCAGCCGATGATCGTGAAATGGTCACT 568775 37 100.0 36 ..................................... ATCGGATAACTGCTTGATTGCGGCATTGGTGCGGTG 568848 37 100.0 38 ..................................... TGCCGCCAATAGCCTTAATAGCTTTGTGAATTGGTGTG 568923 37 100.0 39 ..................................... ACTGGAGAATGAAATGAATGAAATGACCGTATTGAATGT 568999 37 100.0 37 ..................................... GCCACCCGCGCAGGTCGCGGGCGCTCATTCCGAGCAA 569073 37 100.0 38 ..................................... TGCCGCCAATAGCCTTAATAGCTTTGTGAATTGGTGTG 569148 37 100.0 39 ..................................... ACTGGAGAATGAAATGAATGAAATGACCGTATTGAATGT 569224 37 100.0 35 ..................................... ATTCAGTACCTGAGAAGCCTAATGACATGATAATT 569296 37 100.0 36 ..................................... GCAGGAAGCGCCATGCTGGGCGCGACTGTCGCCCAG 569369 37 100.0 36 ..................................... ATCATCAGCGGCTTTGTGATCGGTTTTCTCAGGTGT 569442 37 100.0 36 ..................................... CAATGACACGCCACGATCACGCAACTCTTTAATTAC 569515 37 100.0 36 ..................................... AGAAATATGCGCGACAGGCTTTCGCCGTCGCTGCTG 569588 37 100.0 37 ..................................... ATGCTTGAAAAACGCAACGTCAAAACCTTCACAGCAT 569662 37 100.0 37 ..................................... CGTCTGCTACAGCCATGAGGATTGTTTGCGGCGAATG 569736 37 100.0 36 ..................................... ACTAACGAACGTGAGTTGACGGTTTGTTACACGCGG 569809 37 100.0 37 ..................................... ATTGCAATGGCAAGGAAACGACTGTGCGGCAATGCGC 569883 37 100.0 37 ..................................... GCGTATTGCGCCCATGCGGCGGAACTGAGAATTGCAG 569957 37 100.0 35 ..................................... ATGTCAGTGACAAATCGATCGAAGTCCAAACGTCC 570029 37 100.0 39 ..................................... TCGTTGGTGTGGAAATACCACACCGTGACGGTTCCGCCG 570105 37 100.0 36 ..................................... CTGGGTTGCTCGCCACAATTGGCGGCCTATCGGTGC 570178 37 100.0 37 ..................................... TTTCAGAGAATGAAATTGAATTGCGTTGGCAGATTGG 570252 37 100.0 35 ..................................... CAGTAGCGGAAATAATCCCACCAAGGGACGCATTC 570324 37 100.0 36 ..................................... GACAGTATTTTGAATGGCACAGCATTGAACGCGGAT 570397 37 100.0 36 ..................................... TCCTTTCTGTCTATGGGAACGTAGACCGTCACGGCT 570470 37 100.0 37 ..................................... TTTTTTCGTGGGCAGGCAGAGGACGGTTTCTACTGGC 570544 37 100.0 41 ..................................... ACCAGCGCCAGCCACTTTTCGTATTGCGCGGCGGTCAACGA 570622 37 100.0 38 ..................................... CCGCAGCAGAAACCGTCGCAGCAGTAGAAGCGCCAGTA 570697 37 100.0 35 ..................................... AAGCCCACTACGAAGCAGCGAAAACAACCCGCCGC 570769 37 100.0 34 ..................................... TGTGCCTTGGGCAGCATTAGCATTAGCGGCTGGA 570840 37 100.0 38 ..................................... ACAATCACAAACACCATTTGACACCCAGTGCCCATCCG 570915 37 100.0 36 ..................................... ATAGAGTTAAGGCGTTTTTAATCCACGTTTCACCTT 570988 37 100.0 36 ..................................... CGCTTCGATCACTGCCCGTGCCATGCGGTTGCAGGT 571061 37 100.0 36 ..................................... ATTAGCTCGCGGCGATGCGCAAGGAACAGCACTTTT 571134 37 100.0 35 ..................................... ACAATGCGTGTCTTTTCCGTATTGATTGCGCGGTG 571206 37 100.0 36 ..................................... ACGCATCGCGCAAACTCACTGCTCATGCGGTCGTTG 571279 37 100.0 35 ..................................... ATGGTGGTATGTGTTTCGTCGTGCGCACGCACCTC 571351 37 100.0 36 ..................................... ACTTCTCTGGAAGAGATTACATCTCGTCCGTGCGAC 571424 37 100.0 37 ..................................... CAGACAGGAGAACTCAAATTACATCGTTGATGTGGAA 571498 37 100.0 36 ..................................... CTTCCGAATCACGCGCATATGTTTCCCGTGAGGGAA 571571 37 97.3 35 ..............C...................... AGTATAGCGCGGCGACGGCACTCGTTTGACGGTTA 571643 37 100.0 37 ..................................... ATGGTGGTATGTGTTTCGTCGTAGTGGCGGACTTCCA 571717 37 100.0 36 ..................................... TATTGATGGAATTCAGGTGCAACGATCATCATGCGG 571790 37 100.0 38 ..................................... GTCCCACCATGCAGCCGACGGACCGTCAAGACCGTCAG 571865 37 100.0 37 ..................................... CGCAACAACTACGAAGGTGTCGCGCTTGTGTGCGTGA 571939 37 100.0 37 ..................................... TATTTCTCCACGATGTCCTCATTTCCGGCCGTTAATT 572013 37 100.0 36 ..................................... CCCAGTAATTCGATTCGGAGCCTGCGAAACCTAATG 572086 37 100.0 36 ..................................... AATACGACGGCGAGGAAATGTGTATAGGATACAACG 572159 37 100.0 38 ..................................... GAAACAATCGTTTTCTCTTAATTTTAAGAGCTGGTCTT 572234 37 100.0 34 ..................................... GTGGTACGGGTATTGGCACAACAGCGGCGCAAGG 572305 37 100.0 37 ..................................... AGTCGCACCGCCATTCTATTGAATGATAAATACAAGG 572379 37 100.0 37 ..................................... AGTCGCACCGCCATTCTATTGAATGATAAATACAAGG 572453 37 100.0 38 ..................................... ATTGTGAACGGCTTTCAAGACGTGATGCACTTCATCAA 572528 37 100.0 37 ..................................... AAAGCAGGCGGATTCACTGAACAGCAAGCGGAAACTT 572602 37 100.0 37 ..................................... CAGAAAGAACCATTTTCGATCCATTACGTCGATTGGC 572676 37 100.0 37 ..................................... CATGTCAATCAGGGTAGCTACGATCTTAGTGTTGATA 572750 37 100.0 36 ..................................... AGCGCCTCCTTCTCGGCGCGAATCCATGCCTTTAGG 572823 37 100.0 38 ..................................... GCCATTCTCATTCCTCCATTCCGTCGTCAACACCGCTA 572898 37 100.0 36 ..................................... TCAGTTTACCGCAAGCCATTCGGCAGCAGGGTTATG 572971 37 100.0 37 ..................................... TAAATCCGTTTGGCGAGGCGGGCGGCTTTAGCAGCCT 573045 37 100.0 33 ..................................... GATATCAGGGATGATGAAGAAGACTAACCAATC 573115 37 100.0 37 ..................................... ATGCGCTTGCCTAGCGTGTCCATGCCGCAAGCATACC 573189 37 100.0 36 ..................................... CGTGATGCCGGTATGACCTTGCGCGGAATAGCACAG 573262 37 100.0 37 ..................................... AAAAACAGAGAAAACGGCTGTACGAGCGTTGTAGCGC 573336 37 100.0 35 ..................................... GCAGAACAGGAATGGACACCTATCAAATGCGAGGA 573408 37 100.0 35 ..................................... CTCAGTGAGCTCGTACCCTTCGCATTCACACCTGT 573480 37 100.0 36 ..................................... CCTAGTGCGTCATCAGCAAGCTCGCGTAGACCATCA 573553 37 100.0 39 ..................................... TCCCTACCCTGTCCCACTGTCCCTACCCTGTTCCACCTC 573629 37 100.0 37 ..................................... AACCACTCGAACGGCTCATCCAGCGACGGTTTCTCAT 573703 37 100.0 36 ..................................... CCCAAGATTCTCTACGAGAGTTCCGCCCCACAGTGA 573776 37 100.0 36 ..................................... GCGAGCCGTGCCTGATTCACCAATGGCAAGCATCAA 573849 37 100.0 37 ..................................... CGCGGTGCGGTGGAATGCCCTGACCGCCGCACAACAA 573923 37 100.0 36 ..................................... ATGATCCGCATCCGTGCGCTCGCGTCATAACCAGAG 573996 37 100.0 36 ..................................... CAAACCCAAACGGATTCCTCTCCGCCAATCCAATAG 574069 37 100.0 36 ..................................... ATGTAACGGGCGACATTCAGGGCTTTTTGTTCCCAA 574142 37 97.3 31 ...........................A......... ATGTAATAAAAAACCCGCCGTTTGGCGGGTT 574210 37 73.0 0 A..A...T.......GT....G.....A..AAC.... | AC [574235] ========== ====== ====== ====== ===================================== ============================================== ================== 189 37 99.8 36 GTTGCAACTCAATATCCAATACAACAAGGATTGAAAC # Left flank : ACGCCGCCGGTAATAAAAATGAATTTGGTCATGGGTGGGAATTTCAGAAAGGACTAAAGCGCAAACAAACTACCAAAATCGCTGCAATGCCTCAACATCGAAATGGAACGGAAATTAAAATAAACTGATATTTCTACCATAATTGATCAATAAAAAACCAGTGATTTGCGATAAAAACTTTTATCAAAAAAGTGCGCATTGCTGTTGTAATAACGCGGCTATTTTGTTTAAATCTTCCCATGCTAGTTCGAGCATCTTCATTCGGAAATACGCGGTCAGCGATTAGCAAAGTGTAAAATTTGCTGACAAAAAATTATTTTGGTGAGCGCGTTTGGTCGATATAACAGGTTGTTTCTCGTGAAGAAAAAGCTCTTTTCGTGAACTGAATTTTTGGTCAAAACAGCCATTTTTTCGGCAAAAGTTGAGGTAAAAGATGCAAAAAACGGGGTCAGTAAATTTGGGCTACAGCTTGATTTTGTTGGCTTTTTGATGAAAATGCG # Right flank : CTCACGATAACAATGCCAACGCCTGTTCTCGACACGCAACGGCAGTGTCCTTCTCCAACGCCGTCACCCAGCGTTTTGGAATGGCTTCTAAACCGTAAAACGCGCCAGCAATCATGCCCAAAATCGCGCCGGTCGTATCGGCATCACCGCCACGATTGACCACATCAATTAACGCCGCTTCAAAACTGTCGGTCGCAAACAGCGCCTGAAACACTGCTCGCAACGTTTCGACGATGTAACCGCCGGGATTTTCCATGCGTCGCCGATCAAAACGATACCGCTCATCACTCGCTACCAACGCCTCGGCAATTTTGTGTAAATCGTCACGAGTGCCGCCGCGCAGCCCCGTTTGTACCATTTGAATCACCGCCAGCGTTCCGGCATCTGAAACCAAATTGTGATGTGTGACATGCGCTTGGGCACGATGCGCCGCAGCGATGGTTTCCATCTCCGCGCCCAACGTGTACAGCGCAATCGGCAGCGTGCGCATACACGCACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTCAATATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //