Array 1 1757-2029 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVKL01000004.1 Acidibacillus ferrooxidans strain SLC66 contig101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1757 29 100.0 32 ............................. TCCACTTGCATCAGTCTCCCATCAGTTTTTCT 1818 29 100.0 32 ............................. TTGGTCGATCTGAAATATCTGTGCCTGAATCA 1879 29 100.0 32 ............................. AGGTGTCAAACTCGCGGCCAATGTTCGTGTCG 1940 29 96.6 32 .....................A....... GCTCGGAACAGGTAGCGTCGGGGGTAAGTTTG 2001 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGTATGCGGGGGTGATCCC # Left flank : GTATACGCTCGCTTAATTGGGGACTGCTGATGGTTTCATAATCACAATAAATGCAAGGATTTATGAGGTTTTATGTCGAATCTGTATGCATGGGGTTTCTAAGGAGTAGCTGGTTAAATCCTTGCATATGGAGGGCGACGTGTACAAATATACAGAGCTTCAATTCGTGATGCCAGACGATTTTTTCCTACCCTTTGGCGGAAAATTGAATAAGGAGAATCGGTGGGTTCAACTCGCCTTCCTCATTCCCTGGTGGAAAGTTGAAGCTCACTACGCCTCTCAGTTCAAACCCTCCCACACAGGGGAACAGGCGATGTCTGTACGTGTTGCGCTTGGTGCGCTCATCATCCAGCAGCGACTCCATCTGAGCGACCGTGAAACGGTTCGTCAGATCACGGAAAACCCTTACCTCCAGTATTTTTGTGTACTGTAGGCTGAAAATGTACCAAGTTGTCATCGTGCCTTCCCGGAAGTCGTCCAGGCCGCCGCAAAGTCGGAAA # Right flank : CCAGTGATATGTTGTATGCGTTAAGCACTGAAGAGTCCGCCGTGACTTCCGTTCGTAGCTTCTCAATGATCTAACATTCGGGCGGAGTAACCATGGGTCTGCCCATGTCGCTTAGTCCGTGTTTGCCAAGTCGTGTCTGCGTTTTTAGCTCTCGTTCAGGGGCTATCTTAGCGGAAGCCTGCGTGGTTCTCGGGATTGTTCATGATGGAAAAAGTTTGATGATGATACTGCAAATGATTTAGATTTATCGTAAACTATAATTGAACCCTAAGAACTTTCATACTGTGATTGTGTAATAAATTCACTGATTCTTTCGATGAAACTAAACCGAAATTGTAGATATTGTTTAAAAGGTATTTTTTTTACAATTATTACAACCCCATGTTTGTTCCATTGTTAATTAACTGTGAATGATAAGGAGAGTTTTAGTAATGAAAGCATCCACGACCACGGTTCAGAACATACTTGAAGGAACAAAACAGTACGTTATTCCTTTATTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53362-50296 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVKL01000035.1 Acidibacillus ferrooxidans strain SLC66 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53361 36 100.0 30 .................................... ACACGCCCGTGGCGGTGTTGGACGGTGTTT 53295 36 100.0 30 .................................... TCTACGAACGGTTGGATGATCTCGAGGTTT 53229 36 100.0 30 .................................... TCTCGAGCTCTTGAAGATAGGATAGTTCTA 53163 36 100.0 30 .................................... ATTGCAATCAGTAGTGTTGGGAGCATTACG 53097 36 100.0 30 .................................... ACTATGTTGAGGCTGTTAACCCTGCTTATG 53031 36 100.0 30 .................................... AGTGTTGCTTCTGGCAATTCAAGATCATAA 52965 36 100.0 29 .................................... TCCAGAAAACAGCTTGCAAGCATTGCAAA 52900 36 100.0 30 .................................... ACGACTACTACGATCCTGAGTCGGAGAAGA 52834 36 100.0 30 .................................... CCAGATTGCGTGATCGCAAGTGACTGGAAT 52768 36 100.0 30 .................................... CCATTGATTCGGCCTTGTTTTATCGCTTCG 52702 36 100.0 30 .................................... ATAGGAGCCGGAACTGTAACAAACTCTTCT 52636 36 100.0 30 .................................... CATGGGGTTTCCTTCTTTCGGGTGGTTTGT 52570 36 100.0 30 .................................... TAACGGTTCCAAGACTGTCCACGATCTCCG 52504 36 100.0 29 .................................... ACACTGACCGATATCCACACAGGCGATAC 52439 36 100.0 30 .................................... TTGAGACTCTCATGATCGGTTGGTCAATGA 52373 36 100.0 30 .................................... AAGATCTTTTGGGTTGTCATAGGACAAATG 52307 36 100.0 30 .................................... GTCACGCAAACAATAGGGCTTGCGGATAAC 52241 36 100.0 29 .................................... GGAACTGCAACAACGGCGAGTGCTACTGT 52176 36 100.0 30 .................................... ATAGGAGCCGGAACTGTAACAAACTCTTCT 52110 36 100.0 30 .................................... TGCATCAACCCTTTGACCGTTTGCGCTACG 52044 36 100.0 30 .................................... AATAACGTGGTGGCGGCGATTAACGGCGCG 51978 36 100.0 29 .................................... TCGCTAGCACATCCGCACTGCTGTCTGAT 51913 36 100.0 30 .................................... AGCGCACGTCGAATTTGTTGCCGCGATGAA 51847 36 100.0 30 .................................... CTGCATTTGTCACGCTAGGATACGCTTTGT 51781 36 100.0 30 .................................... CCCCGGCTGCACGCCTTTTGCAACCCCACT 51715 36 100.0 30 .................................... TACACGTTTGCGATACAAAATGCAGAAGGG 51649 36 100.0 30 .................................... ACCCGGCTGGATCAAGTCAAGTCCCGGCAG 51583 36 100.0 30 .................................... TACAAGTAGAAAGGGGCGTGAAGTATTTGA 51517 36 100.0 30 .................................... CATCTCTGTCGCTTTGTTCGCGCCAGACGC 51451 36 100.0 29 .................................... TCTTCTTCGTCGACATCCAACTCTTGGAG 51386 36 100.0 30 .................................... CGTGGAGGCTGTCTAGGATCGCGCGATGGC 51320 36 100.0 30 .................................... CGCATCGGCGTCAAACCCGCGGACCTTGAA 51254 36 100.0 30 .................................... AGTAGGCGATCCGATGTTAAACCCCGTGCC 51188 36 100.0 30 .................................... TCTATAAAGGCGGTAACTTTTTAGTACAAA 51122 36 100.0 29 .................................... CTGAGCTCGTGGAACGTTTGCGCGTGCCC 51057 36 100.0 30 .................................... CATCAAAGCGATGGGTGTTAATTTTTCGAT 50991 36 100.0 30 .................................... TTGCGGTCACATCAGGAATTTACAAAGGAC 50925 36 100.0 30 .................................... ACCAGTCTTGAAGAAGAGATGAAACGAGCA 50859 36 100.0 30 .................................... TGCGGTCTCCGTGTATTGTGTACATTGACG 50793 36 100.0 30 .................................... CGGAGAAGACAAGATAACAAATTGATCGCC 50727 36 100.0 30 .................................... ATGGACAAGCAGAGTCTTTTAAGAGGTCGC 50661 36 100.0 30 .................................... CGGGGCTCATCCCTCGATCAGGCAACACAA 50595 36 100.0 30 .................................... TTCATCACCGCGTCATCGACAACAATCGGC 50529 36 97.2 30 .............................T...... AAGTAACTTATTCTCGTCAGGATACAAGTT 50463 36 100.0 30 .................................... AGATGAGGCGGGCGACCGAGTGGGTGGAGC 50397 36 100.0 30 .................................... TCTCCGCGTTCGATGTTCGCGACGGACTGC 50331 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 47 36 99.9 30 ATTATACCACATCGAGAACTACGAGGGAGCGATAAC # Left flank : CAAGCTTTACTCATTCAATTTCAACCCTAGACCCAGGAGACCTGCTTCTGCCATCCATCACAGCGATTAGGACGGAGGTCTATGAGTAATTACATGAGACTTCTCGTATTGTTCGATTTACCTGTCGGCACGGGGCTCGAGCGCAAGGCAGCGTCTCGATTCCGTACTTTTCTACTCACAGACGGCTACTACATGATTCAATTTTCATGTTACTGTCGAATTTGCGGGAGTTTCGAGATAGCCGATAAGCACGAACGTCGTTTAGAAGCAAACCTACCAGTAAAGGGGTCGGTCCGAAGTCTAGTTGTGACGGAGAAGCAATTTTCAAGAATGAAAATTCTTGTGGGAGAACACGTCTCCAATGAGGTGAAAATTCACAGTGAGCAACTTGTGCTTTTTTGAAAAACGACTGAGCATAACCTTGTGGATAGTTCCCAAGTTGCTTTTTAACTCAAAAAAACTGCCAAAATACCCTTCAAAAGCGGGATTTTAGCAGAGGT # Right flank : CTGGTTGGACAGCAGGAAATTGTCTTTGATATTATACCACATCGAGAATGGAACAGTATCATTTTAGTTGAGTCGACAAACTCGTAATTCTGGACAGAATGATAAAAAAAGGAAGAAGGAATCCAGATGCGAGTGTACGATAAAGAATTCAAAGAAGAAGCATTAAAATTATCTTATGAAATCGGGCCCACAGCGGCCTCCGAACAACTGGGGGTTCCACCCACAACGCTGTACACATGGAGGGGTCAAAGCAAGAAGCATGGATCCTTGGCATTTGTAGGGAGTGGCCACCAGCGCATAGATCCGAAAACTGCCGAAATGAAAGGGTTGGAGAAAAAGATCAGGGAACTGGAATCCGCCAATGATATCCTGAAAAAGGCGTTAGCTTTTTTCGCAGAGAGCCAAAAGAGGTAGCTGCACGAGACTTGTTTCGTTTTATAGGGATTCAAAAGAAAAAAGACGAAGCCAAGCACAGTGTAAAGGAAATGTGTAAGGTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACATCGAGAACTACGAGGGAGCGATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //