Array 1 162802-160759 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162801 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162740 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162679 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162618 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162557 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162496 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162435 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162374 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162313 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162252 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162191 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162130 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162069 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162008 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161947 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161886 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161825 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161764 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161703 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161642 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161581 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161520 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161459 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161398 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161337 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161276 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161215 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161154 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161093 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161032 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160971 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160910 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160849 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160788 29 93.1 0 A...........T................ | A [160761] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181413-179309 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181412 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181351 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181290 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181229 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181168 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181107 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181046 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180985 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180924 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180863 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180802 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180741 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180680 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180619 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180558 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180497 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180436 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180375 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180314 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180253 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180192 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180131 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180069 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180008 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179947 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179886 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179825 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179763 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179702 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179641 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179580 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179519 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179458 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179397 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179336 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //