Array 1 1223473-1224747 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1223473 28 72.4 38 ACAGGA..-G................... TATACAAAAAAGCGGAGGCGTTGCTGCGTTAGATTCAA 1223539 29 100.0 34 ............................. AGCATAACAAAAGAAAAAATTCTTGATAAAAACT C [1223567] 1223603 29 96.6 36 ...................T......... TGTTCCTTATCCTAACACATTATTAAATATTTCACC 1223668 29 100.0 36 ............................. AGGCAATGGATTTATTTCTCAATTTAAACCAGAGCC 1223733 29 100.0 37 ............................. CTTTCTTGCTCATTAAATCTGCTTTCAGCTCTTTCAT 1223799 29 100.0 36 ............................. CCTGTTGTGTTTGCTTGAACGCCTATCTTAATCCCG 1223864 29 100.0 36 ............................. CTCAAAACAGGTATTGCCTGCCTTATTCTTCTTGCC 1223929 29 100.0 36 ............................. TTGAAGCTGATTTTTGCTATAATCCATTTTTGAATT 1223994 29 100.0 36 ............................. CAAGGTTGTAAATATTTTGATACATGTCTTGTGAAG 1224059 29 100.0 36 ............................. GAGCTCTTCTTTTCATTTCTCTTTGTACAGCTTCAA 1224124 29 100.0 37 ............................. AAGATGTGAATCTAAAAAAGCGTATGCAAGATATGTT 1224190 29 100.0 36 ............................. CTGCTGAGCAACAGTTAAGTTTTCAAGCCCTTTAAG 1224255 29 100.0 37 ............................. ATGATAAAAATTCTTATTGATTGTATAGTATGTTTTT 1224321 29 100.0 37 ............................. CAAACTTGCTTTAGCAACTTTTCTCGCATAATCCTCA 1224387 29 100.0 38 ............................. TTGCGAACGCTGTCTACCACAGTTTTAACAAAGATGTC 1224454 29 100.0 36 ............................. ATCTACTATGCCTTAGCATATCATAATGATTTTAAA C [1224482] 1224520 29 100.0 35 ............................. CTATACCAACTTACAATATAACAAAAGATTGGGAC 1224584 29 100.0 38 ............................. GTCACAAAAAACGTTCAATGTTTGAAATGAAAGATGAC 1224651 29 100.0 38 ............................. GTCACAAAAAACGTTCAATGTTTGAAATGAAAGATGAC 1224718 29 79.3 0 ..................GT.A..TC..T | G [1224742] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.4 37 GTTTACATCCCTCATAGTTCAGATAAAAC # Left flank : CAAAGTCTTAGAAATTAATATTTACTTAACAAGAAGAGAACTTACGCCGTACAAAATGGAAAAATGGAGTTCCCAGCATTAGAAAATGCATTAACAACATAACCCAACTCTACAATTTGCGTTATAAATTGGAAACACAAAATTCTTGACAAGTCTCATCACGTTCTCTTTGCCATTTGCTTTCATTATCTTATTTGCCCAATCCAAAAATTTTTCCATACCTTCTTTTCTATTCTCAAACTCTATTCTCTTGCCAAGCTCCACTCCTCTAAAATCAAATGCTCTGCCAACATGCCTTTCCTTTGCTATATCTACTCCTACAACTAATGTTTTCTCTGTGACTTGTAATATCTTCTCATTTTGTGTATACTTCAAGGTAGGTACCTCCTTTTGTGATGATTTCTCGTAAGTTCTAGAACTTACTTAACTATATTTTATCAGGAGGTACCTTTTCTTTTTCAAATCTCATTTCACTTCATTTTCACTCATTTTCGTTCATT # Right flank : TATCAAAATGAACAAAAAATCGAAAATAAAAATGTACAAAAAATAAACTTAACTTTGCTGGTTTGTATTGCTAAAATATGCTGTTTTTGACTGCAATCTGTATGAAGGACCTTTTATGAAAATCACGTAAGAATGATGCAGTAGCCTATCTAAAATTGCATTTGCTATTGTCGCTCCACCAAATATCTCTCCCCATTCTGAGAATACAACATTAGTTGTTATTATTGTACTGCTCTTCTCATATCTGCTCGATATTAGCTGGAAAAATAAATTTGCTCCATCATTGTCTATTGGCAAATAACCTATCTCATCTATTATTAAAACTTTGTATTTCGAAAAATGCTTAAGTCTGTACTCTAATCTGTTCTCCAATAATACTTTCTTTAGCTGGGCTATTAACTCTTGAAAATGTATAAAATATGTTGAATACCTTCGTTTTGCACACTCTATACCTATTGCTGTGGCTAGATGCGTTTTCCCTACCCCTGGTGTTCCGACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCTCATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1237403-1228590 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1237402 29 100.0 36 ............................. TAAAGAAAGAGGGAAAGTAAATGGCTTTGATAGATT 1237337 29 100.0 36 ............................. CGCATTAAGCCACTGCAAGGTAGAATTTGACCAATT 1237272 29 100.0 36 ............................. TGTATTTGGACTTTAAAATTGTCATTTGCAATATCA 1237207 29 100.0 36 ............................. GTATGATACAAATGGTAATGAGATTAGATTGTATCT 1237142 29 100.0 35 ............................. CAATATCCATATTTGCGAGGTGTAGATGGTGTCGA 1237078 29 100.0 36 ............................. ACACTTAAAAAACTTAATGTAGCATTCATTGGTGGA 1237013 29 100.0 37 ............................. TTTTATTTTCCTTGTTCGTGTATTAAAATCATATTCA 1236947 29 100.0 37 ............................. ATTGAAAGCAAACCACAGATTGTGAATGCTGACCAAT 1236881 29 100.0 36 ............................. TAAAATTTCTATATCGCTAAATATAACAAGCATATA 1236816 29 100.0 37 ............................. ACGCTTCTAACGCAACTGTTTATGACGTTCATAGGTG 1236750 29 100.0 37 ............................. TCAGTTAATCATTTTAAGCGCTTGGAGCCTTTTTGAT 1236684 29 100.0 37 ............................. TTGAGAACTTTTATATTAACTCTATCAACTAACCCAG 1236618 29 100.0 37 ............................. TTAAACCAACTAAGTATGCTAAATCAAAAGGCAGCGA 1236552 29 100.0 35 ............................. ACAATCTTGTTGGAATATTTTCAAACAGAGCAACT 1236488 29 100.0 37 ............................. AAGATGATGTAGCACCATATGTCGCACTTGGCTTTAG 1236422 29 100.0 37 ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCACTGGAC 1236356 29 100.0 36 ............................. TCAACAATTTTATAGCCAAGTGGTGGAATTCCACCA 1236291 29 100.0 36 ............................. CTATGATTATTATAACAAAATGTTCTGTTCCTTAAA 1236226 29 100.0 37 ............................. CGTGTATCCCAAGTTTAACGCACATCTCATTCACCTT 1236160 29 100.0 36 ............................. TTGATAATATATTTGACTTTGCTCATCACTTTACAG 1236095 29 100.0 37 ............................. GCACCAAACAAGCTCAAAATAGGTATTGCCTGCCTTA 1236029 29 100.0 36 ............................. AGTGATTTCTTTATTGAGTTCCTTTTCTATTTCTGC 1235964 29 100.0 37 ............................. ACAAAAATGGTAGAAAACAACAGAAAGTATAAATTGT 1235898 29 100.0 36 ............................. CTTTGCAAAGATAAAAAATGCTGGTTGTGTGGAGGT 1235833 29 100.0 37 ............................. CCTTTCTTTTTTTTTCTAACAGACCAGCCCTACTCGG 1235767 29 100.0 38 ............................. GTTGTCAATGAAAATTGGTGCTGAGAAGTTGTAATATT 1235700 29 100.0 36 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGTA 1235635 29 100.0 36 ............................. TGTCTGTTTCAAGGCGTCTTATAAGCTTATCTTCTG 1235570 29 100.0 37 ............................. CTTTTTCTGTGCAGCATTGTAAGCCTGCATTACAATT 1235504 29 100.0 37 ............................. GCTAAACCACCAGCTAATAATGTTGCTGTTGCCACAT 1235438 29 100.0 38 ............................. GTGCATGTGCATGAGCCGATTCAGAAGGGTTAATCCCT 1235371 29 100.0 36 ............................. TGAATTTCATGTATCATCAAATAATGTCTCAAATAA 1235306 29 100.0 39 ............................. CTGGAAGCACAAGGGATTATAAAATACGAAATTGATAAT 1235238 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 1235172 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 1235106 29 100.0 37 ............................. ATTCGCATTGATGAGATTAACAGAACAATGATAGCAG 1235040 29 100.0 37 ............................. GTCGAATACTCTAAATCTTCAACTGTATTATAAAACC 1234974 29 100.0 33 ............................. CAATTATATGCTTGTTATATTTAGCGATATAGA 1234912 29 100.0 37 ............................. GCTTGAACTATAAACTGTTTTGTCGCTGGTGAAAGTG 1234846 29 100.0 35 ............................. AATAATCAGTAGGGCCCATTATTTTTTCGCCAAAA 1234782 29 100.0 37 ............................. CTCTATTTTTTTATTTTTAGAAGGGGGAGTAGTGATG 1234716 29 100.0 37 ............................. CTTGCTAAAACTGTAGTTTTTTTGCTTGTAGGTGACT 1234650 29 100.0 37 ............................. CAGGTAGGATATTTCCCTTTGTATGCTGCAGGTTATA 1234584 29 100.0 36 ............................. TTAATTCAAGCAGTTTTTTAGAATTCTGTTCAAGCG 1234519 29 100.0 36 ............................. TTTATAGAAAGCGCTATCATATCGATTGCGTGCAAA 1234454 29 100.0 36 ............................. GCAGTCTTTGTCAAAAACTTTTATAAACATCTTCAT 1234389 29 100.0 36 ............................. ACGGCAACTGAAGCAAAAGCAAGATATGATGAGTAT 1234324 29 100.0 37 ............................. TTTTACTGTTTGATAATGTGCAAATATTCTGTATATG 1234258 29 100.0 36 ............................. CGGAAAACAAATTTGTACTTCCAATCATTCTGCGGA 1234193 29 100.0 36 ............................. CACAGATATTGTTGAACTTCTGGGAATTCTTTTGCT 1234128 29 100.0 36 ............................. TCAGGTAAATTCGGAATTGTACCCATATCATAATCC 1234063 29 100.0 36 ............................. GAAATATCCCTAAAACCATGTCAGAACTCTTCATTG 1233998 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 1233933 29 100.0 36 ............................. CAAGAATCTTTATCTGCTCTAGTAGGAAGCTTTGCT 1233868 29 100.0 37 ............................. GCTTTATCCGGGCAACTGGGATACTCAAACGATTGAA 1233802 29 100.0 36 ............................. GCGAAAGTTTTGATTGATAAAGAAGGTACTTTATGG 1233737 29 100.0 37 ............................. TGTTTCAATAATATTCGTTCCTGTCGTATCATAGTAA 1233671 29 100.0 36 ............................. TCTATACCTTCTATTGAAATTAACATATTGTGACCT 1233606 29 100.0 38 ............................. TGGTGGGTGGCATAATGATACTATAGTTACTGTTGAAG 1233539 29 100.0 37 ............................. ATTGCAAAGTGTAACGTTAGTTTAAAAATATGTGAAT 1233473 29 100.0 37 ............................. GGAGGTAAGACAGTTCAAGCTAGAAGACATTCAGGTA 1233407 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 1233340 29 100.0 38 ............................. CTTTTTTCTTGCAATCTTCATATGTTGAGCTTTGGTAA 1233273 29 100.0 36 ............................. TTCGGACCAGTTGCCGAGCTGGAACGACATAGCAGA 1233208 29 100.0 37 ............................. TAAGTTTTCTTGAATTCATTGCTTCACCACCTTTCTT 1233142 29 100.0 36 ............................. AAACAAAGGAGATTCAGCAACAGATTGAAGTAGTAA 1233077 29 100.0 37 ............................. GTGAAAGGCCGAAACAAACGTCAACGAATTGACCCTG 1233011 29 100.0 36 ............................. CACTTTTGCTAAAACACCGTCAATGGTCAGGTAGCC 1232946 29 100.0 36 ............................. GGTTTTCCCCAGAACAACAAACCGACATTCTTTTCT 1232881 29 100.0 36 ............................. AATATGGGAAGAGGTAGGTACAGAGAAAATAATTAA 1232816 29 100.0 37 ............................. AAAGGTTGGGTATTTACTTGGCTTGCCTTTAACGATA 1232750 29 100.0 36 ............................. TGTGCTTATTCGTCGTCAACCTGATGTGCCTTCTAA 1232685 29 100.0 36 ............................. TTTCTTTTTAGAAATATTAAAAATATGGATTGACTT 1232620 29 100.0 37 ............................. TCAACCCATGGCTGAACCAATCGCTTACCAATAGCAG 1232554 29 100.0 37 ............................. TAGACGCCCAAACATAATAAAGTGCTTCAGGTATTTC 1232488 29 100.0 36 ............................. TATTCTGCCGAGTTCATGTTGTATCACCATCTGCTG 1232423 29 100.0 37 ............................. TTCTTGTTCAGTTGCTACTATTCTTACTACATTACCT 1232357 29 100.0 36 ............................. AAAAAGTTTGCAAGTTTAATTTTAATGTCATCAGGT 1232292 29 100.0 36 ............................. AATATGGAATGGTCAGAGGGTATCAAGAGTATATTA 1232227 29 100.0 36 ............................. TTTTTATACTAAAATTTTGCACAGAAATAGGGCAAA 1232162 29 100.0 37 ............................. GAAATACAGCGCAATAATAACTATATCCTCTGCTTTT 1232096 29 100.0 37 ............................. GATTTCTGATGGAAATCAGGATATTAGCCTCTGGCAG 1232030 29 100.0 37 ............................. TTGAACTTGTATTTTAGATAATAAGTGTCTGTTGCAT 1231964 29 100.0 37 ............................. GCAGGATTCATACTTGGCCGACCTCGCTCAGGTAAAA 1231898 29 100.0 36 ............................. AAAGATATAAAAAAATTTAAAGACAAAGCATACTTC 1231833 29 100.0 37 ............................. TGTTCAACCTACTTTCTTTTGTGAGTATATCTCTATT 1231767 29 100.0 36 ............................. CAGAGCCTGCGGGGGAGGTCTGGAGGGGGAAAGCCT 1231702 29 100.0 35 ............................. TCTTGAGTAGGTCCCATTATCTTTTCCCCAAAATC 1231638 29 100.0 36 ............................. ACCAAAAGTAATTCCTCATATTAATGTGTTTCACTT 1231573 29 100.0 37 ............................. CGAAATCATGAACAGGATAAAAATAATTAATATAGCT 1231507 29 100.0 36 ............................. TTTTTCAATTAATTTATCTTGGTCACCTAATTTATC 1231442 29 100.0 37 ............................. GTCATTTACATTGAACTTTTTCAACCAGTCATTGGTG 1231376 29 100.0 36 ............................. AGGAAAGTAGTTTTGTATGTGCTTCCTGCAGATGCA 1231311 29 100.0 36 ............................. GATCTTATACGATTATAATTGAAAAAAAGTATAATA 1231246 29 100.0 37 ............................. GTACTCTAAATATTCAGCTAATGACATTTCTGTATCA 1231180 29 100.0 36 ............................. AAATGCAGCAAAGCAAGCTGACCTTGACGCCCACAT 1231115 29 100.0 37 ............................. TCTTCATGGAATCATATAAAAAAACAATATGTTGCAA 1231049 29 100.0 36 ............................. GAAATCAAGAAAAAGCCAGCTTCTTTAATACAGCAG 1230984 29 100.0 36 ............................. GCCGACCCAGATGGATATGGGCATCTGAATATGGCA 1230919 29 100.0 36 ............................. TCTTTGTCTTTGTCTTGAATCAAAAGTTTTTTGATA 1230854 29 100.0 37 ............................. GCAAAAACGCGAGCGGGTAATGTATTTGATACAGATT 1230788 29 100.0 37 ............................. TACAGACCCAGTTAGTTACTTTAAAAAATTTGGCAAG 1230722 29 100.0 36 ............................. AAGATTAGTTTCTATGTTCTGTTTGTTCAGCTTTCA 1230657 29 96.6 37 .....................T....... CACACTGAAAAAGAAATCAATACATAAAGATATAAAT 1230591 29 100.0 36 ............................. GTTGATGGTGTAACGTCAGTGACAAATTTGCAAGCG 1230526 29 100.0 36 ............................. AAAGTGAAGGCGGTTCAAAAAGTATAACACAATTCA 1230461 29 100.0 37 ............................. ATTGAACGCAGAGGTGAAGGTGATGACTGGTATTATG 1230395 29 100.0 37 ............................. AAGATTCAACTTCTACTAACACAAAATGCTCATAAAA 1230329 29 100.0 36 ............................. ACTACCGCCCGCTGACACTGGAGACTGGGGTGATAA 1230264 29 100.0 37 ............................. TCTAAACCACCCGAACTAATTTGCTCTGAATAGCTAA 1230198 29 100.0 36 ............................. ATATACTGCTAAATAATAAAACCTTACGTACAACAG 1230133 29 100.0 36 ............................. GTTGACGACAAAGGAAATATCAAAGTTGGTACAACT 1230068 29 100.0 38 ............................. GATATTTTTGTTTGTTCTAGTTCATAACTATACCCATC 1230001 29 100.0 36 ............................. TTTGAAAAGGAAGAAGGTGATAAAGGAGAAAAAACA 1229936 29 100.0 37 ............................. AAAAGTTGTTGTTACACAAGAATTAGGCAGACAATAC 1229870 29 100.0 36 ............................. TCGAGTTTGTTGTTGACGACGACGGCACAGGGGAAA 1229805 29 100.0 39 ............................. CTGGTAAGTATTAAAAGGGTAAGTCGTCATCGTTGCTTG 1229737 29 100.0 36 ............................. CAGGATGGTATGGTCGATTTGGAAAAGATTAAAGAC 1229672 29 100.0 37 ............................. TTGTTTTGTTGCTTGTAAAGGCGTTGTAGAAATTCTG 1229606 29 100.0 36 ............................. GCGGTTTTTTTACTATAAACTCTTGAAAAATTTTTA 1229541 29 100.0 38 ............................. TTTTTAGTTGTTCGTTGGTGGTTTTATTTACACACACA 1229474 29 100.0 36 ............................. ACGTTGCCTGATGGGTCATACAAACTAATTGTGACT 1229409 29 100.0 38 ............................. TTCTCTTTGCTACCCCATTGATAGTGCGGGCATTTCTC 1229342 29 100.0 37 ............................. TTCTTTCATTACTTCATCAAGAGAAGAATGCATTGAA 1229276 29 100.0 36 ............................. TATTCTTTCAAGCTCCGCCTGTACGTCCGTTACCCA 1229211 29 100.0 37 ............................. TCAAGTTTTAAAAGCTGAGATTTAACAGAATCATTCA 1229145 29 100.0 37 ............................. ACAATGGTATATACAATATAAATCCGAATGCTTGCAT 1229079 29 100.0 37 ............................. AGGAGTAGGGATGTTATGTTTGGATAAGGGGTGTAGA 1229013 29 100.0 37 ............................. CATAGTACCGTCTGATGCACCAGATTTGCCACATGTT 1228947 29 100.0 38 ............................. AGGAATAATCTGTATTATTTCATTCCAGTCAACAAACG 1228880 29 100.0 37 ............................. TTACATTGTCAAAAGTGGGTAAGCCACCCTTGGTAAG 1228814 29 100.0 35 ............................. GTTAGATTTTTAATTGTTACCCAATCTCCTGCTGA 1228750 29 100.0 37 ............................. GCCTTTCATTACAAGAAGGGAATTTGGTCTATGAATA 1228684 29 100.0 37 ............................. CGTAAAGGTTGCGGTCTTTGATTGCGTGAAGCTCATC 1228618 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 135 29 100.0 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TATTTGTAATAGTCACATATGATGTCAATGAAAAAAGAGTCAACAAGGTAAGAAAGATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTATTCGAAGGTGAAATCACATTGGGCAAGCTTGAAAAATGCAAACGTGAACTTTTATCGGTTATAGAGAAGAATGAAGATTCAGTGTATTTTTATGAGATGGAATATAAACTTGTGTGCAATAAAAAGGTTTTAGGACAAGAAAAGAACTATGATTCTATTATAATTTGAAGATTTTGAAATGAATCCATTGATGAATAAGTATTTCCGAAACTAACCATTTTGCAGCGAGGCTTATAACTATTTTAAAGTTTCTGTCTTCTTTTCCTACAAGGCTTTCAAGACTCTTTACCATCTCCTTACAAAACCCAACCATCCCCTCGCTGCAATTTATTTTTGTTGTGAAAAATTTGTTAATAGGTTATAATATAGATGTAGCATAGAAAAGATGATATTTATTATTAATGG # Right flank : CTTCAACTGCATTTTCAATATAACCTTTTATCACAGTTTTATCTGTTAGCACGAAAATAGATTGCATTCAAAAATGATTTTGAACATAAACAATAGAAGATTCTCAATCATTTAATAAGAAAAAAAGACAATAACAAACTAACCGATGCTAAAAAGGCATCAGCTGGAATTATTATAAATTTAATCAAGATTTAAACTGATTGGGGGCTTATAACTTCTAAACCAAACTTTTTTGCTTCGCTGATAAGTCGATTAAAACGAATTATCTCTTGTTTCTTTCGAACTTCACTAAAAACTTTTTCATCATAGTCAGTGTCATTCTTAAGCATATTATAGATTATAACCAGTAATTTTCTAGCAAGAGCTACTATTGCTTTCTTTGCCCCTCGGCGCTGCTTTACTTTCCAATACCACGTAGCAAGGTATGAATCTCTTACGCGAGTTAGACTCCATGCAACTTCACACAGTATCCTCTTGATGTAGGTATTACCCTTTGTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 1439349-1438990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1439348 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 1439282 29 100.0 37 ............................. ATTTCTTTACCGTCTTCAGAAGTGTAAACTACCTCAA 1439216 29 100.0 36 ............................. TTTGCAACCTCTCTTGTCAAAAATACCTGACCGAGA 1439151 29 100.0 37 ............................. TCCCTCTGAACAAAAACATCAATATAAAAACCATCGA 1439085 29 100.0 37 ............................. AGCAGTTGCTAAAAATAGCAAATAAGCGCAATGAAAA 1439019 29 96.6 0 ............................G | G [1438992] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GGCAATTTTTTCATTCAATCTAAATTAAACGAAACAAAGGTATATAGTGGTTTAGATTTAACCAGAGAGCAAATAAACACAGGTTTAAAAGATGTTGCTGTTAAATTAAAAGATGCTACAGCGATAAAATTTCCATTTTTAGAATTGGCAAAAAACGATGTAAAACTTCCAGATGGAATAGTACCAGACGCAACAGTAAGTATAGAGAGAATTTTAAAAGAAATAATAGAAGGTAGAGGTAATATAGAGAATAATTTTGTATACAAATTAAACTTAAATTCTTATGTATTTGACTGGCCATGGTTTAAAGTAATAGACAGCGATGGCAGATTAGTAAATGCAACAACAGCAAGAGATCATGAAAAGATGTTATATTATGCACAAGAAGCGTTTAATCCAAATTCTAGATAAAGAATGTTCATGATTTATAGATTTGATAAGAATGGAAATTTAAATTTACTTGATAGTTATGATAAGGTTGCTTCAAATGTTTTATTTAG # Right flank : GTTGGGGTCTGAGTGAAAATTTTTTGACCTTTGAAATTCCTTTAACGGAGCATTATGCTGCTTTTGAATTTTTACTCAAAGGCTAAAATAATTCTTTTAAAAGATTTTGCCAAGTGCAGTTTGGCAGACAAAAAAGACAACAAAAATATTTTTTTGGTTTTATTTTATTTCGTGAGATGATATAATCTTTTTAGAAACTATGTTGTATATTTTTTTATTTTCATGAAATCGCTTTCCTATCTAAAATATTAAAAGTTAAGGTGATTGAGTATGTCGTTAAGAATGCCTTATTTAATTAGCGACGGTATGGTGCTTCAAAGAAACAAACAAATAAATATCTGGGGCTGGGCTGAACCATGCAAGATGGTAACAGTAAATTTCCTGGGAAAGTCATACACGGCAGTAGCTGACCACTTGGGAAAATGGAAAGTTACTTTGCCACCCATGGATGCCGGCGGTCCATACTTTATGGAAATCAAATGCCAACATCATGCTGTTAC # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 1446343-1443426 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1446342 30 100.0 36 .............................. ACATAAAAAACGTGCGATTTCCTTTTTGCCTGTTTC 1446276 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 1446213 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 1446149 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 1446083 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 1446017 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 1445950 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 1445884 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 1445821 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 1445754 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 1445689 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 1445622 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 1445556 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 1445490 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 1445424 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 1445358 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 1445292 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 1445225 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 1445160 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 1445095 30 100.0 35 .............................. ATTCTTCTTTCTTTTGTTTTTCATAGTTTTCCTGA 1445030 30 100.0 35 .............................. ACAAAATTTACAGCTATGCTCAAGAAATGATGAGC 1444965 30 100.0 35 .............................. CCATTAACATGGAGATATGCTTCCTTCTGTGCAAG 1444900 30 100.0 33 .............................. TAGATAAACAGTTTTATTCACAAATGGGGTATG 1444837 30 100.0 34 .............................. TGGTTTGACACGTGTAAGGTTTTCATGGGTGCCG 1444773 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 1444707 30 100.0 36 .............................. AATCAGCTCCTTCTTGAGCATCATACATCACCAAAA 1444641 30 100.0 37 .............................. CTCTTCCTGAAAGCCCAGTTAGCTTGCTCAAGATTTG 1444574 30 100.0 36 .............................. CTCTAAATTGTCCACGCAAAACATCTATTTCCTCGC 1444508 30 100.0 33 .............................. AAATTTATATAAAAATATTTTCTGCACATTTTT 1444445 30 100.0 37 .............................. TCGACCACTACCCAGCGAGAGTTTTTTGGAACAGCCA 1444378 30 100.0 35 .............................. CCGCATGATTGGCAGTGGATAGCAGAGCTTGACGA 1444313 30 100.0 37 .............................. ACAGCTTTTGCCAAATCACGATAAGTAAGTTGTCTTG 1444246 30 100.0 36 .............................. AAACTCTCAGCCTCTTTACACAAGTTATATAGCCTT 1444180 30 100.0 36 .............................. TCATATAAATACCCCCCTATCTTATTTCTTATCTTG 1444114 30 100.0 36 .............................. AAGTATTTTTTTCTTATTACAAACGGAATAAGCGTT 1444048 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 1443982 30 100.0 36 .............................. AAGAGAGTTTAAGACTTGCAAATTCGAGGAGTGGTA 1443916 30 100.0 37 .............................. TGGAGGGAAGAGTGATGGTTTATCAAATCAAAATTGA 1443849 30 100.0 36 .............................. ATTAACGCATCGTCGCTATTCAGTTTGTCCTCTCTT 1443783 30 100.0 37 .............................. TCAGCTTCTTTTTCAACTTTTATGTTGCTTTTACTTA 1443716 30 100.0 36 .............................. AGACTTTTTAAAACTGTTAATTATTTTTTACCTATT 1443650 30 100.0 36 .............................. ATGTGATAGCAAGGAATATACGATTTAAAAGAGGTG 1443584 30 100.0 35 .............................. TTGTGTTCTGGGTCATATAATCCATATTTTGCAGC 1443519 30 100.0 34 .............................. TTGCTTTCGTTTTCTCGCTCACAGTATTCAATTG 1443455 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== ===================================== ================== 45 30 99.9 36 ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CATTGGATTTTTATACATTGAAAATCCTTCTTTTATTCTGTTTATAAACCAATCACCATAAAATGCTGGAATATCTGTTCTTCTGCTTGCACTAATAATCATCTTACTGTAAACTTCCTTCTTTGATATAGGATATTCAAAAAGATTTGAAAAACATTGCTTTTATATTTTTATTTTACCATATATTTGCTCAGGACAGTATAAAATTATTTCATCAAATATTGCTATTTATTTTGATTTTTCTATATTATGTTATTAATGTTTATACATTAATTGCCATATAATGTTTTGTGCTTTGCTAATAAAGAGAATTTTAGATTTTGTATTTACCAATTGCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTATGAGATTTCTCAAATTATCTACGT # Right flank : CCTCGATGTTTTTTCGTTTTATTTTGATCTAATTCTGTGCAAAATTCGGGTATAATTCGATTGGCTGTTGGTTTTGAGGTTTGGGTTTTGTAAGAAGTTTCCATTTGTAGATGTTTGACTTAAGTAGGAAGTTGTTTAGAGATTGGTTTAAAAATTGAGATACTTTAGAGTGTTTACTTAATTTTACCGGTATTTTGGAAATATAGTGGAAAGGTATGTTTGAAAATTTATAAGAAATTAGTGACAATGGGGTGGAAAATTATGATAAAACTTAATGAGTATGGGAATATTATTTGTTCAAGGGAAAATGGAGAAGTAGTAAGAGAAAAAATATTAAAGGAAATAAAAAATGGTAATATAGTTGTAATTAATTTTGAAGGTGTTGAAATGATTAATCATTCTTTTGCAGATGAAGCATTTGGGAAATTACTTTATGATTTATCAGAAGATGTCCTTAGAAATCAAATAAAATTTGTTAATGCTAATGATGACATAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 1455793-1454969 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1455792 30 100.0 36 .............................. CGATGAAGGATTGTAGGATTTTTGCAATATATAAAC 1455726 30 100.0 35 .............................. TATAATAGTTGCTCGCATAGGAAACTCTATACATT 1455661 30 100.0 36 .............................. AAAGTTTATCTATTTCTTCTTGCGTTTTATTTGTTT 1455595 30 100.0 37 .............................. AAATATTTAGCGCTTTGTCTTTAAATTGAGAATATAA 1455528 30 100.0 37 .............................. GTCCCTCACAACGATGAAACAATCAAAAGAATCTATT 1455461 30 100.0 36 .............................. TAAACAAATTAATGTAGCTAAATTTGTCGCCTTGTA 1455395 30 100.0 36 .............................. TCCAGTGGGATGGAAAGAGATGAAATAATGTCAAAA 1455329 30 100.0 37 .............................. AAAATAATCAAAGATTCTTTTACCCCACCTACACATC 1455262 30 96.7 36 .............................T CAATATCGAGAATAATCTTTCTTCCTTCAGTAGTTT 1455196 30 100.0 36 .............................. GATAATGAGGGATTGAAAGTTGGTGAGCTTGTGAAA 1455130 30 100.0 36 .............................. TTCCTTGTATTCGCTACAGGCAAAGTGATTTTACCA 1455064 30 100.0 36 .............................. TCATAATTTAATCTTCTGCGTGTTTGTCTGCGCAAA 1454998 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : CTTCTCTTCTATTTTTTGAGCTGGCAATTTTTTAGTTTCTGTTGTAAGTTTAATCATCTCAAAGTTTATTTTATAACTTTTTTTGGCAGTTGAAAAGTTCAAAAAATATGCGAACTTTTAATAATGATAGCAATTATTTAGTCAGTGTGCAACCTGTATAGTCATTATATTATCGTTCAAAATAAAAAGATATGTGTCAAAAATTTAATAAAACAAAATAATACTTTTACATTCATTTTGTCCTTAGATTTACTTTTATGTTTGTTTATATTCTTCTATATGGCTCCATGTGTTTAGAAAAATAAGACTTAAATTAGCTTTTGTATTTACCAATTCCTGTCGACCTGCAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGACAAATTTTGGCATGTATTGACTTGTGGGCTTTTGAGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : GTTATTATGAAGATTTTGACACTTTAGAGCAAGAACTTGATACAAATATACTTGACAATTTTGAACTTGATGAGGCGGCACCATTTTGATGGTATATGAAGTTACTTATAACAATTCAAGACTTGTGTTTGAAGGAAAAGAAATTAATTATTTCAAGATTTTAGAGGCTTTAGATAAGCTTAGAGATTTGCGTGACTATATTGAACTGTTTTACACTGAGTATTCTGGTCTTCCTCTTACCTCTCTTCCATATGATGTTTTACTTGATATTTTTACAAACTATCTTGACTTTATAGGTGTACAAATAAAGGTTATAGGTAGGTAAACTTTTTTATGGGTGACAAGGCAAAAATAATTGAGCTCATGAAAGCTATTAATAAAGCTAAAGGTGGAAATGTGATAGGTTTTTTGGTAAGATAGCACCAAAATCTATTCCGGTAATTCCAACTCAATCACTTATTCTGAACAAACAGCTAGGTATTGGTGGATTTCCAGGTTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 6 1484372-1481567 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1484371 30 100.0 37 .............................. AGGCTTTCTAAAATTTCTTCAACGTCTTTTTTGCTTG 1484304 30 100.0 35 .............................. AAAAAGCTGAGGAAAGTGATTTTCTATCAGGACGA 1484239 30 100.0 36 .............................. TTGCTAAAAATGTCGCAAAAACCGTTATACCAGCTG 1484173 30 100.0 35 .............................. TGCCTTATTGATGAATTATCTATGATAGATTTAAA 1484108 30 100.0 36 .............................. AGGGAATTGTAAAGAAGGAAAATACCAGCTGTGATG 1484042 30 100.0 35 .............................. CAATATTTTCATAGCTTTCATACACATAATTTTCA 1483977 30 100.0 36 .............................. ATAATTTTCATTTGTACATAAATGGTGTTGAAGCAA 1483911 30 100.0 35 .............................. AATCCTTTTAACCTCATGGGTCGTGTAGGGAGTAG 1483846 30 100.0 35 .............................. TCTTAAGACCACTTTTTGTTTTAACAAGTTTAACA 1483781 30 100.0 35 .............................. TTAACCTCTTGTCTCCATCAGGAACTGGAGCAAGA 1483716 30 100.0 36 .............................. CGGGGATGTTTTTACCTGCCCAATTTTCGATGACTA 1483650 30 100.0 36 .............................. ATTTCACAGATGATGCAGTTAGGCGTTCTTACAATA 1483584 30 100.0 37 .............................. GCTGGCTGGGTTCTGTTAGTTTTTTTCAGTGTCGCCC 1483517 30 100.0 36 .............................. GTCTTTTATCACTTCTCGTTTCACATCCCCTACCAA 1483451 30 100.0 36 .............................. AATACATCATCAAATCCTCAAATTCTTGATCGTATG 1483385 30 100.0 35 .............................. TTGTACACTTCAGGGTCTTTTGGGACAGTTCCTAA 1483320 30 100.0 33 .............................. GCAAAAAATCAAGTACTTTTTTTATTTTTTAAA 1483257 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 1483191 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 1483124 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 1483058 30 100.0 37 .............................. TTTGCTTTGCTTATCCCTTTAGCTTTGCTGCTTACTA 1482991 30 100.0 36 .............................. CTATTTCAGTAGTTGCTAATGGTTTGTCAACGTCTT 1482925 30 100.0 36 .............................. TTTTACAATTACTATTATACTCGAAATTTTTATTTT 1482859 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 1482793 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 1482727 30 100.0 36 .............................. AACGTTTTAAAAAGGATGGCTGAAGGTGAACGTGTT 1482661 30 100.0 38 .............................. TGGAGAAATCAGGTAAACTGTCCATAACGTCCTCAATG 1482593 30 100.0 36 .............................. GCATTAATTCTTTTTCTGTTTCAGCTAACATAGCCG 1482527 30 100.0 37 .............................. ATTTTTTGAATGAGATAATGCAGAAGACGAAAGGAGA 1482460 30 96.7 36 .............................C TAATATAGCAGAGCTATACTTTGTAGTGTTTCTTCA 1482394 30 96.7 35 .............................C TTTTCATCTATGATGTCCATCAACTTTTCAACAGT 1482329 30 96.7 36 .............................C ACAATGTACATTAATCTGTCAGGGAATATTGCTTTT 1482263 30 100.0 36 .............................. AAGAAATAGAGAGAAAAAGAAAAGAAGAACAACAAA 1482197 30 100.0 36 .............................. ATATTTGACCTTCTTACCACCTCAATCACCCTCTTA 1482131 30 100.0 36 .............................. TAACCGGCTCTCCTGTTACCCTTATAACACTTGTTC 1482065 30 100.0 36 .............................. GTGCGGTATCTGGAAAAGATTTTGTAATTCAAGATT 1481999 30 100.0 36 .............................. TGTGAAATATTCTGTTTTGTTTCTTCTTCAAATATA 1481933 30 96.7 36 .............................C CATCGAGTAATGCGGACTGCAACTTCTCATAATCAT 1481867 30 96.7 38 .............................C CACACCTCACCTTCTTTTAACTGCTTTTCAATTTCCTG 1481799 30 96.7 38 .............................C ACATAAGTAAAAACGGTAAAACTAAGTAGAACAAAAAG 1481731 30 100.0 37 .............................. AAGAGCTTGAAGATTATATAAAACAAAAAAACACAAT 1481664 30 96.7 37 .............................C TGACAATTAAAGCATATCAAAATGCCTCAGTAGCATA 1481597 30 90.0 0 ...............G.........A...G | T [1481569] ========== ====== ====== ====== ============================== ====================================== ================== 43 30 99.2 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Left flank : TTTTTATAGAATCTTTCCAGTATCCATATATCTGAGAGAGCTTGGACATGGGCAATCATACCTTTCAATTTTGATTTATCTTTAAAATAGTTTATACCCCCATTGAGTGTGATAGTTATTTACATAAAATACTTTTATATAATACCTTTCGACATATATTGACATAATCCTCTATTTTAATGCAATTTTCAGAAAAATTGATTTTTTATTAGTTTTATCTTTGATTTTTAAATAATAATTGTGATTATTTTGCATTATTGTTATTACATTTTATTCCTTTTCAGCTTCTGTATTTAGTTTTATGAAATAAATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : GAGTCTGAGTGTTGGAAGTAGAAGAGAAAAGGAGACCTTCTGTTGGGGATTTAAATTGCTACCAACAGGGTGGTAATATGGTAGTGCAAGTGCATGGTTTGTATGCTTTTACTTTGGAAATTAGGGAAATAAAAGAGTTTTTGCTTTAAGAATTGAATAAAAAGAAGTGTCTTCTTTTAGAAAACTGTGTTAAGGAAAGTTTCTCACCAATTTTATAAAAAAAGGGGCTTTTCATAGCCCCTTTAATCCTTGTCCGTGAACAAGTATAATCTTTTCAGGTTCTAAAATTCTTAATGTGCGTAAAATTTCAAAGTAGTTAGAATGAGCAGAAAGAGGAATATCAAAATAGTGAACCTCAAAATTCTTTATTACCTTTATCATCTCATGAATATACTGCTGTTCTTCTATATATCCGCTTTTGATAAACCCAAATGCACTGCCGTTCAAAAGTTGAACATACTTTACTGCAATGCTGTTTGGCTGAAGCATACCAGAGCTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 7 1508878-1505357 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1508877 30 100.0 37 .............................. TCAATCTCCAAAACCTTTATATACTTAAAATCATAAA 1508810 30 100.0 37 .............................. TCTTTACCATATGATAAGACTTTCCGCTTCCAGGTTT 1508743 30 100.0 36 .............................. TTTATGATTTGTGTTTTTATTTCGAACTATGAGGAA 1508677 30 100.0 37 .............................. ATAAAAGCAATTAGTTTGTAACTAAGGTCATCTTTGA 1508610 30 100.0 35 .............................. CAGCTTCAATCTCAAGTTTGTCTTGTTCATAATTG 1508545 30 100.0 36 .............................. CTGCTTGGTTGCTTCAAGCTCTAAAACTTTGAGCTC 1508479 30 100.0 37 .............................. TATGCATTATTTATGACAGAAATTTAGATAACGAAGG 1508412 30 100.0 36 .............................. CAATATCTCGTATCTTCTCACTTGCCTTGTCTGTTG 1508346 30 100.0 38 .............................. TATCTTGCCTTAGTAACAATTGCCTTCTTTTGGTTCGT 1508278 30 100.0 37 .............................. ACTTTATTATCGTTCACAAGGTAGATAGATTTGCTCG 1508211 30 100.0 36 .............................. GTGTACACATCTTTACCTTTTTTCAGATTATATACT 1508145 30 100.0 37 .............................. ACTTCTCGATTATTTTTGAAAATAACTTTTCCTGTAT 1508078 30 100.0 36 .............................. ATGAACCTAGCATTCTTACAACTAAAAAACATAAAT 1508012 30 100.0 36 .............................. ATTTTTCGACTTTGTTTGCATCGGTAAAGGATACAA 1507946 30 100.0 36 .............................. TTCTTTTTAGGTTTTGTTGATTGTTTTGAAATTTTA 1507880 30 100.0 38 .............................. AAATTAATAGATGTAGAAGGTGAACCTTTCAAATATGA 1507812 30 100.0 38 .............................. TTGTGTCTCATTCATTCTATCACTTCCTTATCCAACCA 1507744 30 100.0 37 .............................. ACTCTTTCTCTTCTCTTTCTCTCTCTTGCATCATCAC 1507677 30 100.0 37 .............................. CACGATAAGAAAAATGACGTAAGCAAATATTGTGCTG 1507610 30 100.0 36 .............................. TAATTTCCTCCTTTCTAAATTTTAATCCCTAAATGG 1507544 30 100.0 36 .............................. ACAACTTTGAAGAAGCTCCACAGACCACGCAGAACG 1507478 30 100.0 35 .............................. CTTAATGAGTTCGTTTTGCTTACGGATGGTTTCCA 1507413 30 100.0 36 .............................. AGTGTTTGGCTATCAGCTGTGTTAGTTTGGTATGGT 1507347 30 100.0 36 .............................. AAATTTATTGCTGATGCATTTAGTTCTTTAGGAAGT 1507281 30 100.0 36 .............................. AAATTTTGAGTGAAATCTTTAGTGAAAGTGATTTGA 1507215 30 100.0 36 .............................. TCATCTGCAACATGTTGTGCGCAGTTTCAATGAAAT 1507149 30 100.0 39 .............................. TATATATAACTTTGATATTTGTTATTTTTAGACTTTTTG 1507080 30 100.0 35 .............................. TCTTTTCCAAATCCACCGTCCCATCCTGTGGCACA 1507015 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 1506949 30 100.0 36 .............................. ATTGTATCATAGCTACATTTGTGTAAACACCTAAAG 1506883 30 100.0 35 .............................. CCCACTATCTTATCGTAGTAAGTCACAATAGCCGT 1506818 30 100.0 36 .............................. ATGTAACCACTGATTCTAAACGTACTACTTAAAACT 1506752 30 100.0 38 .............................. TTTCATAAAACCTCCTATGATTCTTAATAATAGTCTTA 1506684 30 100.0 36 .............................. TTTTTTCATTTTTCCATATCTCTGTCCAATATTCCC 1506618 30 100.0 37 .............................. AGATATAAAGATTTACTTTTGCTGTTATAAAATCATT 1506551 30 100.0 35 .............................. ATATCTCTTATCATAGACTTACAATCATCATAATT 1506486 30 100.0 36 .............................. CAAACTCTATTACTCTTTGTTCCAATTCTTCAGCCC 1506420 30 100.0 36 .............................. ATAGCTCAGGTTTGTATAATACATCACCTGATTCAG 1506354 30 100.0 38 .............................. AGATATACAAGCTTATTCTTGCCGTTATAAAATTATTC 1506286 30 96.7 35 .............................T ATGAGAGTAACGCTATTAGAATGGTAATAAAGTGG 1506221 30 96.7 36 ...........C.................. GGTACAACAGCAAAAAATCCTCTTTATATGGCAAAT 1506155 30 96.7 37 ...........C.................. AGGCTATCACAAGCCTTATCACCAGCGCCAATATAAA 1506088 30 96.7 38 ...........C.................. TTTGAATTTGACACAAGCAGTAACAGGAAGTGTAAATT 1506020 30 96.7 36 ...........C.................. AAATTATTAAAGTTCTTCAAACAAAAGAAGAAATTG 1505954 30 96.7 36 ...........C.................. ATGCCTTTAAATTGTAACCTCTCAATCCTTCTACAA 1505888 30 96.7 37 ...........C.................. GTAAAAATGGAGATACAATAAATGGAATACTTAATAT 1505821 30 96.7 35 ...........C.................. AATTATAGTGGTAGTATACCTAATACTTTTCGTGT 1505756 30 96.7 35 ...........C.................. ATAGAATATGTCTGCTTGGTGTATCGCAGGATTTA 1505691 30 100.0 38 .............................. TTTGTTCCAGCATTGTAAACTCCACTAGCTGGTGAATA 1505623 30 100.0 36 .............................. AAGAAAAGCGAGGCTGTGAGGTTTTTAATGCAGAAT 1505557 30 100.0 36 .............................. TTACATTTTCTCTACCAAACTTCTCTGTTATTCTTT 1505491 30 96.7 37 A............................. CTGGTAACCTGACTGTTGAATACTTGTCAAAAAGATT 1505424 30 86.7 8 ...........C...............GGA TGAAGTGG Deletion [1505387] 1505386 30 70.0 0 .C....TTA..G..T...T..A.......T | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 98.6 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAAAATATCACCAATCTCAACTATTTCCTCTATCAATAGCCTCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCGAATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTTTTAAGGTCAAATTTTATGCGAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGTGGCGTATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGCAGTACCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTTGCATTCTGCAAGCTATCCACGG # Right flank : AATATCTTGAAATTTGTTGATTTTCTTTTAGAACGGGTTTATTTGTAGCTCTCTTCTTGGGAACGATAAGTAAAGAATTTTCAAAAATACTAAATTAAGTTACAATTTTGGTAGCTTATATATCCTCCAAAGAAAGATTAAGATGAATTGGGTAAATATGGGATAAGAAGAATAAAATTATTGTCAACTTAGCCTGTTGAAGCAGGGGGTGCCAATGATTTTAACCATTTTGTAAGATGCATTGAGCCCCCTTAATCAATCATTCAAACAGCAGGAAGGACAAGCAGAAAAGGTAAATAATGAAAGAACAAAGTAACAGTTGTTGAAGTTGTATCTAAATATAGGGGAAGAATTTTTATAAAAAAGGTTTATGATAGTGTATCGACTGATTGATGTAACCAAAAAATTTTAAGTCAATTCCAATTTGGTTGATGAAAGCAAGTTTGAGGAGCTAATTCTTGAGCATTACAGAAAGCTTGCATGACGTGCTGTTTTTGAAA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 8 1523836-1523672 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSHA01000001.1 Caldicellulosiruptor bescii strain RKCB123 Ga0154044_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1523835 31 96.8 36 G.............................. ACGTAAAAAATAAGGAGTATGTAAGGGGTTTTTTGC 1523768 31 100.0 35 ............................... TAATTTTGATATTTTTCATAGTTAACACTTATCAG 1523702 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 98.9 36 AGTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : ATTCGAATTGGAAAAGCGAAGACAAACAGGTGAGTGAAATTCTTTTGCAATTCTCATAACATCATGCATAAGTAAATGCACTTTTTCTCACTCTCCTTAACAGACTGGAAATACAAAAGACATAGTAAATTTTAATATGAGATTTTGATAACTTTAAGGTCAAAAATTATGCGAATTTCATTTATGAACATGGAAAATTAGAATTTTCATTACATTAGTTAAATGATATTGTTTGTAATTCAGTTTATATTTTCTTTTTTGTTATGATGTTATGTTTAATTTTTGTATTTTGTATTTACTTTTTCCTATACTTTTTTACTTTTGTATTTACCAATTGCTGTCGACCTGCAATTTCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGATTTTCAAGAGCTTGTGGGGTATAATAGAAACAATCTATAGTTGCTTGAAAACATAACCATTTATTCCTTGCGACGTTTTTCAAAAACCTCCAC # Right flank : AAATTAATATAAATATGAAAATCAAATAAAAGTAAAAAATGGAGGTGTTGACATTATGAAGATTAAATTAAACAAAAAGTCAATAATATCATTGGCAGTGGTGGTGACATTTATTATAGTAACTTTATTAAGTCCTGTATTTTATAATTGTAGCCAAAAGTCAAGCGTTAAGCAGGATATTACCAGCCAGCAACCTACAGATAGTAATACCCAAACAGAAAAATCTACTACTATAACAGATAAATTGTTCAACTGGATGAACATATTTAAAGCATATGCAGATAATACAAACAGTGACAGTGATGGCAATATAGATAATGAGATAGTTAATGATGCACCATATTTAGTTCCAGTATGGCAGCCAGGGGAGATTAACCCAGTAATATACCAGAAGAACGGAAAATTGTATAGGTTAAATGATGTTTCTCCAGAAACTTTAGCTAGGTATTGCAGGATATTGTATGAGTTAGAGGTAAAAGATGTAAAAGAAAAGTATGTTG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //