Array 1 18242-17746 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGZ01000004.1 Bacillus pumilus strain RI06-95 MP_final_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18241 32 100.0 32 ................................ TTTCTCCTAAATAATCATATTTTTTCAAAGCA 18177 32 100.0 34 ................................ TCTTTTACATTATCGTCAACAATGAATGGAAGTT 18111 32 100.0 35 ................................ ATATATTGTTTCTGGGTTGTTAGTGATAAGTGAGT 18044 32 100.0 35 ................................ CAGTTGTTGTTATTGTGGGTCTGGCAGTGCCTATT 17977 32 90.6 35 ........C..T......A............. TTATGTATTTCCACTACTGTTCCTTCCCCATATAA 17910 32 93.8 34 .........A....A................. AATTGCAGAGTCTATACCTTGCACTTGTACTCTT 17844 32 93.8 35 ........C..T.................... ATTACAGTTTCATATCCCTCCATAGCTCCGTTGAC 17777 32 93.8 0 ........C..T.................... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Left flank : GGATTGAAATCTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTCGTCGCACTCTAAATGAGTGCGTGGATTGAAATTCTAACTTTTCGGGTTCTTTTACAGATGTCCCGGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : AACCTTTTTCAATCCATCAAGGATAGCCAGGATGGATTGAAAATGTCTTGGATATCGAGATAGCGCAGTAATTCGTCGTCACACTCAACATAAGTGCATAGTCCACAGTTTCTGCGAATTACATAAATTCAAATATCTATCCCCAAAAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAAGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATTTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18897-18533 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGZ01000004.1 Bacillus pumilus strain RI06-95 MP_final_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18896 32 100.0 32 ................................ TCTAAGGGGGATAGCTGTTTTTTTGCCCTTAT 18832 32 100.0 37 ................................ ACACTTCAGCGTGCCGTCAGATTGATACTGAAAGTAC 18763 32 100.0 34 ................................ CTTCAGTGTATAGTTCGTTGTGTTGAAAAGGGTC 18697 32 96.9 33 ...........A.................... TCTAACTTTTCGGGTTCTTTTACAGATGTCCCG 18632 32 100.0 35 ................................ CTTGCTTGGATATGTCGGTTTATTTGGTGTTTCAG 18565 32 90.6 0 ...................GA......A.... | T [18536] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTCCGGCCATTTTTTTGTTAGTGATGGTGTCGCACTCTATATGAGTGCGTGGATTGAAATCTCTCAATTTGATAGTTAACTTGTTGCTTAAAAGTCGATGGTTCAGCTTGATGTTTTTTTCAAATCGCACTCTATATGAGTATGAGGAGTAAAATTCTTATCAGAAGGTAGCTTGAAAGATATATTGACAATTGCGCTTGATATAGTTGTGAAAAACAAAACTCTGTCTCAGCCTTTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTTTAAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATTCCTGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTAGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCA # Right flank : TGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTTTGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTTTCTCCTAAATAATCATATTTTTTCAAAGCAGTCGCACTTTACATGAGTGCGTGGATTGAAATTCTTTTACATTATCGTCAACAATGAATGGAAGTTGTCGCACTTTACATGAGTGCGTGGATTGAAATATATATTGTTTCTGGGTTGTTAGTGATAAGTGAGTGTCGCACTTTAC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 28057-27627 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGZ01000004.1 Bacillus pumilus strain RI06-95 MP_final_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 28056 32 100.0 34 ................................ TCGCCCTTTTTGTCGATCTTATAGCCTAAGTCTT 27990 32 100.0 35 ................................ TTGAAAGCAACACTTCTAGTCTGTTTTGCTTTAAG 27923 32 100.0 34 ................................ TTTACAAATAGTTTCTCCTGCAGCTTGTAAATAT 27857 32 100.0 35 ................................ TTGAAAGCAACACTTCTAGTCTGTTTTGCTTTAAG 27790 32 96.9 35 ...........T.................... AACGCTGAGGATGCACCAGAAGGAAAGAAAGACGC 27723 32 96.9 33 ...................T............ ACAGTAGCCGTATTAATTACAGGTCTTATATTT 27658 32 78.1 0 ...........TC...A..T.A...A.A.... | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.0 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCGCTCAACAAAATAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACTGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTCGTGAAGAAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : TCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGAAATAGGTGTGAAAAACATAACTCTGTCTCAGCCATTTTATTAATGAATTCAAAGATGTTGATGAAGCAGCGAAATAAGTATGATTATCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAGAGATTCGGTGCGAATGTCAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTTATTCGACAAAATGGGTAAAAATGTATATTTCGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCCCCAACTTTGTACACCGCCTATTGTTGGTAAGTGTCGCACTCTATATGAGTGCGTGGATTGAAATCCCCAACTTTGTACACCGCCTATTGTTGGTAAGTGTCGCACTCTATATGAGTGCGTGGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //