Array 1 157805-156739 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSK01000013.1 Methanohalophilus sp. RSK RSK_scf_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157804 29 100.0 32 ............................. ATGATTATACATCAAACACAGAGGTAACCGTA 157743 29 100.0 32 ............................. GGCTATCTGGTTGAGGTAGTCAGCTGCAGAAT 157682 29 100.0 32 ............................. ATTTTAATACCGTTCTGGTTTTTGGGTTTGAT 157621 29 100.0 32 ............................. TTTTTAAATACTTCATATGGTAAATGGGGACA 157560 29 100.0 32 ............................. AGTTCCAGACAGGAAGGAAGAAAGCGATTGTG 157499 29 100.0 32 ............................. CATTAACATGGTACGTGAAAACCTGCAAAAAT 157438 29 100.0 32 ............................. AGGGTGTTTCCGTAAGTGCCATTTCTGTATTG 157377 29 100.0 32 ............................. TGTGTTGCCGTCAACGTCAACAGTTCTCACAT 157316 29 100.0 32 ............................. AATGCTTTACCATTATGAGTTTGTTCGGCGAA 157255 29 100.0 32 ............................. GGGCTACTGTTCGAATTGAAAATACTACAATA 157194 29 100.0 32 ............................. CACTCCAGCAATTTGATGCAGTTCCAATCGGC 157133 29 100.0 32 ............................. ATTTCATGCAAATTAACCTCAGGTTGCGAGCA 157072 29 100.0 32 ............................. TTTTCCGAAATCTTCCACATCGAATACTATAT 157011 29 100.0 32 ............................. TATGATACTTTTTATACTTTTCTTGTAATATA 156950 29 100.0 32 ............................. AACACAGATGGTGGAATTATCCGAAAAAACAA 156889 29 100.0 32 ............................. CGGATGCGGAAGAATATAATGCAGCGCTTGAT 156828 29 100.0 32 ............................. AAACCTTTGAGAACTCTGCTGGTGGGCTTGAT 156767 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GAGTTCCCCACACATGTGGGGATGAACCG # Left flank : ACTATAGAGGAAGTCCTTTCTGCAGGTGAGATCGAGTTGCCTGAAACACCGAAAGAGTCATGGCCTACAGCAATTCCAAATGAGAGGAGCATTGGTGATGTTGGTCATCGTTCTTGAAAATGCTCCTGCACGTTTGAGGGGTAGGCTTGCTGTATGGCTTCTTGAGGTTCGTTCAGGAGTATACGTCGGAAATTATTCAATCAAAGTAAGGGAAATGATATGGCGTAATGTTGAAGAGGGACTGGAAGATGGTAATGCTGTAATGGTATGGAAATCTCAAAACGAAGCAGGATATGATTTTGTCACACTTGGCACCAACAGGCGTATCCCTAAAGAAATGGATGGCATAAAATTAATATCTTTTTTACCAGATAATTGACTTGTATTGAGATGATACATGTGGCTTATAGGAAAATCCAATCAGGAACATTGATAAGAATTTTCAGAATTCTTACTACTGTAGGAATCTGACTTCCGCCTTTCCAAATAAATAAGAAACA # Right flank : TATACATGGAAAGATTATTACATTAAAACAGGAGGATACCATGACCAACGCTGATGAAATTATAAAATACCTTAATATGAGCAAGCACCCCGAGGGTGGGTATTTTAAAGAAACTTACAGATCCGGGGAAACGATCAAGCACAAATATCTCCCAGGCAGATTTACCCTGGATCATGCATTTTCCACGGCAATCTACTTTTTATTAAAACAAGATGAATTTTCAGCCCTCCACACAATAAAACAGGAAGAAATCTGGCATTTTTACAACGGGGCACCCATTGACATACACATGATACATCCAGATGGCGTTTATGAATCGATCCATCTTGGAAATGACATATTAAACGGTGAGGTTCCACAGGGTATTGTCCCTGCAGGTTCAGTCTTTGGTGCAACAGTGTGTGACAGTCCCAAATATGACTATTCGTTGGTGGGATGTACGGTTGCGCCGGGTTTTGAATTTGAGGACTTCACACTGCATAAGAAAGACGAATTACTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACATGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTATTCCCCACTCATGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65064-61270 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSK01000017.1 Methanohalophilus sp. RSK RSK_scf_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 65063 37 100.0 34 ..................................... TTATTCCCGAGGTTACTGAGAAGGATAAGATTAA 64992 37 100.0 36 ..................................... CCTAGAACTTAGAGTGACATGTATCCCGGCTTTATT 64919 37 100.0 37 ..................................... TTCTGCCGGATTGACCGCAGCAGCTGTCAAGGATGAT 64845 37 100.0 40 ..................................... AGAACTGTAAATATTACAGGAGAAACGCACATACCTGTAA 64768 37 100.0 35 ..................................... TGATTAGTGAAAGGTTGCCTTCAATGCTTTAAGGT 64696 37 100.0 36 ..................................... CCCGCACGGCGTCGCCGAGACCCTCGCTTATAGCCT 64623 37 100.0 39 ..................................... TGTATGGATCAGCGTGTATTTCTGCATCCATTTTCAGGT 64547 37 100.0 35 ..................................... TTTTTTCCAGAAACACCCCGAGGATGGTAAGTAAT 64475 37 100.0 42 ..................................... TTTAAAACTCCGTCCTTGTCTGTATAGTCACGTCTGCGTGTT 64396 37 100.0 37 ..................................... ATTTATATCACCGTGCTCGGGGTGATGTTTGTTTGTT 64322 37 100.0 38 ..................................... ATTGAATGCAGCCTGCATGTTCTGTGCGGGTATTTCCT 64247 37 100.0 38 ..................................... CGGTAGAAACAGTGATGTAAACGGAACTGTGCAGAAAT 64172 37 100.0 36 ..................................... AAATCAACGATCTTCTATGAAGGAGAGTGGATCACT 64099 37 100.0 38 ..................................... GATACATATCTGCAAGAAAATTTATACATTCATCAAAA 64024 37 100.0 40 ..................................... TTTTGATTACTTCCAAACCGAATCACTGCCTTTTTCAATG 63947 37 100.0 39 ..................................... TAATTGATGATGATGGTCCTGACATTGCGATATTCGTGA 63871 37 100.0 41 ..................................... CAACATGGGCATTCAGTTCCACCATATTCAATCTGTTCACA 63793 37 100.0 39 ..................................... ATGAAGAACTCCTTGTCGACCGCTTCCCCATATACAGGT 63717 37 100.0 40 ..................................... GTTTCTGGGTCAGTTCACCCACATTTTCATTGATCCATCT 63640 37 100.0 42 ..................................... ACAATTACAAGAGCAATTACAGCAATTACAAGAGCAATTACA 63561 37 100.0 47 ..................................... TTTGCTAGAAGTAGCATCATGGTGAGTTCCACGATGTTGTGACTTCT 63477 37 100.0 36 ..................................... TACCTCTGTTGGTTCAATTCTCATTTGTGTGGATGA 63404 37 100.0 36 ..................................... GTAATATCCAATATCCAATATCCAGTATCCAATATT 63331 37 100.0 36 ..................................... CCGCACAACCGTTTTTTTCCAGCTCCTGTTCAAATT 63258 37 100.0 37 ..................................... TGCTCGTGCAGCCTTGCCACCAAAGGCCATACCTGCA 63184 37 100.0 40 ..................................... TCCAAGAGGATAAATACTACAGCACATTGCAAGTTGGTGT 63107 37 100.0 38 ..................................... CTAACCTCTTAAAGTTTATTTTCTACTAAAATAATTAG 63032 37 100.0 36 ..................................... CCTCATTATTTCATACATTGATTGCCAGGAATTCCC 62959 37 100.0 38 ..................................... ATTAGAAATAAATGATAGTTCAAAACCTTCATCCAGTT 62884 37 100.0 39 ..................................... TTATTATATGATTGATTTTTTTCTCGTTTTTTGCTTTCA 62808 37 100.0 42 ..................................... ACATTGCAAATACTATTTCAATGATAGCCCTTTCTGTATCTT 62729 37 100.0 36 ..................................... CACTTTCCTTCAAACGTTTGATTTGCTGTTTCATTG 62656 37 100.0 40 ..................................... TTATCAACTACGAAGATCTAACCCCTGAAATGGATCTGAT 62579 37 100.0 38 ..................................... AGAGAGAAAGCCTTCCCCCTGCAAACCGTGGCAGATAG 62504 37 100.0 38 ..................................... TTAACAAATGTGTCAATCTTTTTTGATAACTGCATTAT 62429 37 100.0 36 ..................................... CAACAGTACCTCTTGACTAACGGTATTCAGGATTGC 62356 37 100.0 37 ..................................... CAATTTTGGATTCGAGCCCTCTAATTAGACTCATCTT 62282 37 100.0 37 ..................................... TGCAACCAGTTTATAATGCTGCATATCTTCTGCACCA 62208 37 100.0 36 ..................................... GAATCTATATAGTATTTCACTGTACTAAATTGTACC 62135 37 100.0 39 ..................................... TCACAACTGTATTATAGTCAATTATTTCTGGCATATTTT 62059 37 100.0 38 ..................................... ACAAATAATTTTGGTCGACTGCCTGCCGACGAAATCCC 61984 37 100.0 38 ..................................... TCCTGTGCGCTGACCACAATTGCATAATCGCGTCTATT 61909 37 100.0 37 ..................................... ATAGTGCCTAAATCCTTATCAGAGACCATTACCGTAT 61835 37 100.0 37 ..................................... ATGCGGAACAATGCACGTCCGTCTGCCGGCTTAAATT 61761 37 100.0 37 ..................................... GGTAAATACTGGAGAGAAAAGATCTGGCTGAAATCGG 61687 37 100.0 39 ..................................... GTTCAGGTTCTTTATTTTCTTTGATTTCTGTATCTGTCA 61611 37 100.0 37 ..................................... TACTTGATAGAAGAAAAGACGCATTCGGTATCAAACC 61537 37 100.0 43 ..................................... AGATCCTTTAGATCAGATTCTAGTTTTATTCTGCCATACTCAT 61457 37 97.3 39 .................................C... TCAATCAGCACAGATTATGATACAGTTTGTGCATGATTG 61381 37 100.0 38 ..................................... AGTGTGTAGCACAACCGTCGCCGATACCATTCTTTTCG 61306 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 51 37 99.9 38 GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Left flank : ATGGTTTAATGAGGATTCAGTATAGTGTTTTTGCAGGAGAAGTTCCTTCGAATAAAATAAATGAATTGTCCTCCCTACTTTTTGGCAATAGTTTAGCAGAATCAGATACTATCACAATATTTCCTTTATGTAAGGAATGCCAGGATAAGGTTATCACATCAGAACCATTGCCTCAGGAAATCAAACATCTGTCATTATGATGTACAGACCTTTATAAAGGGTTGGGTCAAAAGGAGGTCTGTACACACAAATTATCATTTTAAGCCAATGGTAAGTTCAATTTAACCTCAAAAGGACATTAAATATTCATCAATATTTTTATCATGAAGCCTACAGATAGTGTTTTACTTGTTGTAACAGTGTTGCATTTTATGGTATCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGACAAATTGAGGTCTGTACAACACCCCCTCAAAAAGAAGTGTTCTAATGCCTCCAAAAGTAATTTAAAGGAAAAAAACATAGG # Right flank : AATTTTAATCTGGTCCTGTAAAAGAGACTGTCGGAAAAGTGGTAAAATCGAAAATTTCAAGCAATGACTGAAAGTCAAACGCTATGCTGTGTTGCACTGTATTTAATGGATATGTTATAATTTTCTTGAATATGGGCTTTTCCGACAATCTCAATTATAGGCAACTTCATTTTCTTACCCTCCAATAATCAGAGCCATCCGAAGAGTCTCTGGAAAAGCCCTGCTTTTTTCACTTCCACCCTGGCCTGGAGGGCATCTGAATATTCTGTATCCCCATCAAGATTTTCGTATCTTAGTGTGGTATCGATTCCATAGTCCTTCGCTACAGCTTCACTATCTGCCTTGATTTTAATCTTTGCAACCGCAGTACTGCCTGGATCCATTGTGAAGAGATACGCCATATCGTCGGTTGTGCTTAAAGGATCCGAAGGATTGACAATCAGCTTAACTTCTCTTGCCTCTTCCTCACCGGTGTTCATTACTGTTATTTCAATAACTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 78149-79697 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDSK01000017.1 Methanohalophilus sp. RSK RSK_scf_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 78149 37 100.0 36 ..................................... CTCAAATCAATATAGAATTTCTTGAGGGCATCTCTT 78222 37 100.0 35 ..................................... ATGATACACTTTTAACTGTTCGTCCGGTTGGACGT 78294 37 100.0 37 ..................................... AAAATCCATCGCGTCATTTTGATCTGAAGTAAGATGT 78368 37 100.0 37 ..................................... CTCGATATAGTCGTGGCTACTGTAACAGAATCCGATA 78442 37 100.0 41 ..................................... GTATCTGCATGCACCGAATTGGCCTTCGAAGAACTCTTTTT 78520 37 100.0 36 ..................................... AAACAATAGTTGGAAACTGTTGCATAAACAAATTTG 78593 37 100.0 42 ..................................... CTTACGGTATTCTATATCTCCTGCCTCACGTTCTGTGTTAGA 78672 37 100.0 41 ..................................... TCGTGATGCACCCAGTTTCTTCAATTCATTGAGTCTCTTGG 78750 37 100.0 37 ..................................... GGTGATTGCTTCTATTTGGTACTTTGTTCTTATTGAT 78824 37 100.0 38 ..................................... ACTGGAAAATCAACATTGGTCAGAAAACTGATTGGTGA 78899 37 100.0 41 ..................................... TCGTGATGCACCCAGTTTCTTCAATTCATTGAGTCTCTTGG 78977 37 100.0 41 ..................................... TAGATATGCCGTGTATTCAATTACATATTTCATTCTTGTGT 79055 37 100.0 36 ..................................... CGATACCATGCGGGCCGAGGCCGAAAAACTGCAGAA 79128 37 100.0 41 ..................................... CCCATGTGTCTGTTTCTCCACATAACTTACATGTAAAATCA 79206 37 100.0 43 ..................................... ACCTGCGTTAATTCCTGTTTCTTAGATTTAACCTGATCGAGTT 79286 37 100.0 37 ..................................... CAATCATCATTTTGATAAACATCGAAATATATTCTAT 79360 37 100.0 39 ..................................... TCCTGACCAAGTACCATGTTTCCGTCAGTCATCCTGAAA 79436 37 100.0 39 ..................................... TTGTTTCACCAGGTGGCTGGTATTTCGTTCCTGCAATGT 79512 37 100.0 36 ..................................... CCTTGTCTACTGCTTCACCATAGATTGGTGAAAAAT 79585 37 100.0 39 ..................................... TTGTTTCACCAGGTGGCTGGTATTTCGTTCCTGCAATGT 79661 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 100.0 39 GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Left flank : TGACATTTTGCTTAGTGGATATATCCACCTGTACAACCGTGGTTATCATGACATCCTAAATAATAAAAAGAGGAATCATATAAACTTATTGCATTAATTCTGTACAGGGAGTTATTTCTACATGAATTAATGCAATGAACGCAACTATATGACTTTAAATCATGAATACGTCATAGGTTTAATTCGATCAATGAACTATGTGTACAGACCTTTATAAGGGGTTGAGCAAAAAGAAGGTCTGTACACACAAATTATCATTTTAAGCCAATGGTAAGTTCAATTTAACCTCAAAAGGACATTAAATATTCATCAATATTTTTATTATGAAGCCTTCAGATAGTGTTTTACTTGTTGTAACAGTGTTACATTTTATGGTCTCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTATTGACAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTGTTCTAATGCCTCCAAAAGTAATTTAAAGGAAAAAAACATAGG # Right flank : CTTTTCAGCAGGCTGTTTGCATTGTATCCCCAGTTTGACAGTTTCTACTCTATCTTGAAGAGAATGGCTTCTCTTTCAACCCAAAATTTTCATTTTTTTGTCAGGAAAAGCTATTTGACAGTTCAAACAATTTCATGTGAAAAACTCCGATTTCATCGGTTTTCCTTTAAAATGGATGCAATTTTCAAGAAACTTGGCCTGAATTTACTCGCTGAACCCTTATGTTCATAAGAATAATGCTCATCTGTCAAATTCCATTAAGCTATTTTTGGATATTTTTTGCTTGAAAACAAAATGAAATTGATCTAAGAGGCTTATTTAGAAGATTCAACAATGCTGTCAAATTCTTTGTCCAAAAAATGGGCAAAAATCAGAAAAAACACAATCCAATGACTTATGTGATACTGTCAAATCAATGGGGCAAAAAATGGATAAAATTATAAAAACAAGCATGGAAGAAAGAAAAGATGCTAGCGAACGATTAGAAGAAAAAAGATAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAGTAGCTCCCGAGAAAATAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //